Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 MIR4286-201ENST00000580651 93 ntBASIC2.96□□□□□ -1.94
CCDC140Q96MF4 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC2.96□□□□□ -1.94
CCDC140Q96MF4 MIR486-1-201ENST00000612171 68 ntBASIC2.96□□□□□ -1.94
CCDC140Q96MF4 Y_RNA.802-201ENST00000614892 130 ntBASIC2.96□□□□□ -1.94
CCDC140Q96MF4 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC2.96□□□□□ -1.94
CCDC140Q96MF4 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
CCDC140Q96MF4 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC2.96□□□□□ -1.94
CCDC140Q96MF4 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
CCDC140Q96MF4 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC2.96□□□□□ -1.94
CCDC140Q96MF4 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC2.96□□□□□ -1.94
CCDC140Q96MF4 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.96□□□□□ -1.94
CCDC140Q96MF4 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC2.96□□□□□ -1.94
CCDC140Q96MF4 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC140Q96MF4 SNORD114-7-201ENST00000362520 77 ntBASIC2.95□□□□□ -1.94
CCDC140Q96MF4 Y_RNA.332-201ENST00000365271 113 ntBASIC2.95□□□□□ -1.94
CCDC140Q96MF4 MIR592-201ENST00000384959 97 ntBASIC2.95□□□□□ -1.94
CCDC140Q96MF4 MIR627-201ENST00000384979 97 ntBASIC2.95□□□□□ -1.94
CCDC140Q96MF4 MIR626-201ENST00000385032 94 ntBASIC2.95□□□□□ -1.94
CCDC140Q96MF4 AL138878.1-201ENST00000405131 347 ntBASIC2.95□□□□□ -1.94
CCDC140Q96MF4 MIR1253-201ENST00000408273 105 ntBASIC2.95□□□□□ -1.94
CCDC140Q96MF4 RN7SKP220-201ENST00000410611 288 ntBASIC2.95□□□□□ -1.94
CCDC140Q96MF4 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC140Q96MF4 AC025750.2-201ENST00000442609 450 ntBASIC2.95□□□□□ -1.94
CCDC140Q96MF4 TRBV12-2-201ENST00000489763 344 ntBASIC2.95□□□□□ -1.94
CCDC140Q96MF4 AC018868.1-201ENST00000491307 315 ntBASIC2.95□□□□□ -1.94
CCDC140Q96MF4 RN7SL323P-201ENST00000494712 295 ntBASIC2.95□□□□□ -1.94
CCDC140Q96MF4 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC140Q96MF4 RNU2-34P-201ENST00000516534 121 ntBASIC2.95□□□□□ -1.94
CCDC140Q96MF4 SCARNA14-201ENST00000516903 136 ntBASIC2.95□□□□□ -1.94
CCDC140Q96MF4 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC140Q96MF4 AL360157.1-201ENST00000565962 87 ntBASIC2.95□□□□□ -1.94
CCDC140Q96MF4 AC034105.4-201ENST00000568304 277 ntBASIC2.95□□□□□ -1.94
CCDC140Q96MF4 AC087499.8-201ENST00000578406 226 ntBASIC2.95□□□□□ -1.94
CCDC140Q96MF4 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
CCDC140Q96MF4 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC140Q96MF4 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC140Q96MF4 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC140Q96MF4 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.95□□□□□ -1.94
CCDC140Q96MF4 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC2.95□□□□□ -1.94
CCDC140Q96MF4 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC2.95□□□□□ -1.94
CCDC140Q96MF4 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
CCDC140Q96MF4 RNU6-1180P-201ENST00000364935 107 ntBASIC2.94□□□□□ -1.94
CCDC140Q96MF4 SNORA25B-201ENST00000365507 128 ntBASIC2.94□□□□□ -1.94
CCDC140Q96MF4 RNU6-969P-201ENST00000383900 105 ntBASIC2.94□□□□□ -1.94
CCDC140Q96MF4 AL355497.1-201ENST00000406262 551 ntBASIC2.94□□□□□ -1.94
CCDC140Q96MF4 RNA5SP511-201ENST00000410487 115 ntBASIC2.94□□□□□ -1.94
CCDC140Q96MF4 RNU6-383P-201ENST00000410864 94 ntBASIC2.94□□□□□ -1.94
CCDC140Q96MF4 AL451074.5-201ENST00000415894 435 ntBASIC2.94□□□□□ -1.94
CCDC140Q96MF4 HSPE1P13-201ENST00000451143 297 ntBASIC2.94□□□□□ -1.94
CCDC140Q96MF4 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.94□□□□□ -1.94
CCDC140Q96MF4 Y_RNA.797-201ENST00000515977 94 ntBASIC2.94□□□□□ -1.94
CCDC140Q96MF4 RNA5SP164-201ENST00000516533 110 ntBASIC2.94□□□□□ -1.94
CCDC140Q96MF4 CYCSP30-201ENST00000546447 172 ntBASIC2.94□□□□□ -1.94
CCDC140Q96MF4 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC2.94□□□□□ -1.94
CCDC140Q96MF4 MIR3616-201ENST00000584070 92 ntBASIC2.94□□□□□ -1.94
CCDC140Q96MF4 POLR3GP1-201ENST00000594073 261 ntBASIC2.94□□□□□ -1.94
CCDC140Q96MF4 SNORA62.6-201ENST00000606322 83 ntBASIC2.94□□□□□ -1.94
CCDC140Q96MF4 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.94□□□□□ -1.94
CCDC140Q96MF4 AL354798.1-201ENST00000622505 329 ntBASIC2.94□□□□□ -1.94
CCDC140Q96MF4 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
CCDC140Q96MF4 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC2.94□□□□□ -1.94
CCDC140Q96MF4 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC140Q96MF4 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC2.93□□□□□ -1.94
CCDC140Q96MF4 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC2.93□□□□□ -1.94
CCDC140Q96MF4 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
CCDC140Q96MF4 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
CCDC140Q96MF4 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
CCDC140Q96MF4 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.93□□□□□ -1.94
CCDC140Q96MF4 AC009487.4-201ENST00000624969 3585 ntBASIC2.93□□□□□ -1.94
CCDC140Q96MF4 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.93□□□□□ -1.94
CCDC140Q96MF4 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.93□□□□□ -1.94
CCDC140Q96MF4 snoU2_19.4-201ENST00000364329 80 ntBASIC2.93□□□□□ -1.94
CCDC140Q96MF4 AL359837.1-201ENST00000381357 287 ntBASIC2.93□□□□□ -1.94
CCDC140Q96MF4 RNU6-746P-201ENST00000384112 109 ntBASIC2.93□□□□□ -1.94
CCDC140Q96MF4 RNU6-187P-201ENST00000384139 106 ntBASIC2.93□□□□□ -1.94
CCDC140Q96MF4 Y_RNA.506-201ENST00000384494 102 ntBASIC2.93□□□□□ -1.94
CCDC140Q96MF4 RNU1-89P-201ENST00000384592 164 ntBASIC2.93□□□□□ -1.94
CCDC140Q96MF4 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
CCDC140Q96MF4 RNU6-381P-201ENST00000391259 108 ntBASIC2.93□□□□□ -1.94
CCDC140Q96MF4 SNORA36B-201ENST00000410438 131 ntBASIC2.93□□□□□ -1.94
CCDC140Q96MF4 TRIAP1P1-201ENST00000427062 225 ntBASIC2.93□□□□□ -1.94
CCDC140Q96MF4 RPS29P7-201ENST00000439662 171 ntBASIC2.93□□□□□ -1.94
CCDC140Q96MF4 Z96811.1-201ENST00000445880 108 ntBASIC2.93□□□□□ -1.94
CCDC140Q96MF4 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC2.93□□□□□ -1.94
CCDC140Q96MF4 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC2.93□□□□□ -1.94
CCDC140Q96MF4 SNORA84-201ENST00000459229 133 ntBASIC2.93□□□□□ -1.94
CCDC140Q96MF4 AC091153.1-201ENST00000466297 402 ntBASIC2.93□□□□□ -1.94
CCDC140Q96MF4 RNU7-115P-201ENST00000516433 55 ntBASIC2.93□□□□□ -1.94
CCDC140Q96MF4 RNA5SP143-201ENST00000516936 115 ntBASIC2.93□□□□□ -1.94
CCDC140Q96MF4 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC2.93□□□□□ -1.94
CCDC140Q96MF4 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.93□□□□□ -1.94
CCDC140Q96MF4 AC005972.2-201ENST00000604690 348 ntBASIC2.93□□□□□ -1.94
CCDC140Q96MF4 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
CCDC140Q96MF4 MIR548AY-201ENST00000617669 107 ntBASIC2.93□□□□□ -1.94
CCDC140Q96MF4 5S_rRNA.13-201ENST00000622298 123 ntBASIC2.93□□□□□ -1.94
CCDC140Q96MF4 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
CCDC140Q96MF4 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
CCDC140Q96MF4 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
CCDC140Q96MF4 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC2.93□□□□□ -1.94
CCDC140Q96MF4 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC2.92□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 260 ms