Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 AC067942.3-201ENST00000512025 362 ntBASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 RNU6-1041P-201ENST00000516254 102 ntBASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 RNU6-864P-201ENST00000516256 108 ntBASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 RNA5SP384-201ENST00000516615 116 ntBASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 RRN3P3-201ENST00000549207 578 ntBASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 SNORA77B-201ENST00000578179 125 ntBASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 AC012557.2-201ENST00000605919 418 ntBASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 AC013412.1-201ENST00000610687 192 ntBASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 TCL6_2.1-201ENST00000615162 119 ntBASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 AC126177.8-201ENST00000618339 1015 ntBASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.29□□□□□ -2.2
CCDC54Q8NEL0 Y_RNA.301-201ENST00000364990 103 ntBASIC1.29□□□□□ -2.2
CCDC54Q8NEL0 SNORA67.5-201ENST00000391036 107 ntBASIC1.29□□□□□ -2.2
CCDC54Q8NEL0 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.29□□□□□ -2.2
CCDC54Q8NEL0 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.29□□□□□ -2.2
CCDC54Q8NEL0 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC1.29□□□□□ -2.2
CCDC54Q8NEL0 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
CCDC54Q8NEL0 AC007395.1-201ENST00000451333 677 ntBASIC1.29□□□□□ -2.2
CCDC54Q8NEL0 snoU13.30-201ENST00000458951 104 ntBASIC1.29□□□□□ -2.2
CCDC54Q8NEL0 AC069439.1-201ENST00000494739 167 ntBASIC1.29□□□□□ -2.2
CCDC54Q8NEL0 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.29□□□□□ -2.2
CCDC54Q8NEL0 Y_RNA.655-201ENST00000515919 96 ntBASIC1.29□□□□□ -2.2
CCDC54Q8NEL0 SNORA31.24-201ENST00000517232 57 ntBASIC1.29□□□□□ -2.2
CCDC54Q8NEL0 MTND1P5-201ENST00000517906 940 ntBASIC1.29□□□□□ -2.2
CCDC54Q8NEL0 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.29□□□□□ -2.2
CCDC54Q8NEL0 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.29□□□□□ -2.2
CCDC54Q8NEL0 MIR5006-201ENST00000583027 110 ntBASIC1.29□□□□□ -2.2
CCDC54Q8NEL0 AL158827.2-201ENST00000602494 330 ntBASIC1.29□□□□□ -2.2
CCDC54Q8NEL0 AP000907.4-201ENST00000604143 237 ntBASIC1.29□□□□□ -2.2
CCDC54Q8NEL0 AC083806.3-201ENST00000614016 455 ntBASIC1.29□□□□□ -2.2
CCDC54Q8NEL0 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.29□□□□□ -2.2
CCDC54Q8NEL0 AL133216.2-202ENST00000634512 349 ntBASIC1.29□□□□□ -2.2
CCDC54Q8NEL0 AL691447.3-201ENST00000635020 330 ntBASIC1.29□□□□□ -2.2
CCDC54Q8NEL0 Y_RNA.9-201ENST00000362354 101 ntBASIC1.28□□□□□ -2.2
CCDC54Q8NEL0 U8.1-201ENST00000362843 134 ntBASIC1.28□□□□□ -2.2
CCDC54Q8NEL0 Y_RNA.295-201ENST00000364918 102 ntBASIC1.28□□□□□ -2.2
CCDC54Q8NEL0 RNU6-975P-201ENST00000384296 105 ntBASIC1.28□□□□□ -2.2
CCDC54Q8NEL0 RNU6-1215P-201ENST00000384441 102 ntBASIC1.28□□□□□ -2.2
CCDC54Q8NEL0 MIR150-201ENST00000385048 84 ntBASIC1.28□□□□□ -2.2
CCDC54Q8NEL0 SNORA67.6-201ENST00000391093 99 ntBASIC1.28□□□□□ -2.2
CCDC54Q8NEL0 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
CCDC54Q8NEL0 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC1.28□□□□□ -2.2
CCDC54Q8NEL0 AC009237.7-201ENST00000447357 229 ntBASIC1.28□□□□□ -2.2
CCDC54Q8NEL0 ATP5J2P3-201ENST00000451550 258 ntBASIC1.28□□□□□ -2.2
CCDC54Q8NEL0 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.28□□□□□ -2.2
CCDC54Q8NEL0 RNU6-273P-201ENST00000516937 96 ntBASIC1.28□□□□□ -2.2
CCDC54Q8NEL0 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.28□□□□□ -2.2
CCDC54Q8NEL0 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.28□□□□□ -2.2
CCDC54Q8NEL0 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.28□□□□□ -2.2
CCDC54Q8NEL0 AC027288.2-201ENST00000553028 243 ntBASIC1.28□□□□□ -2.2
CCDC54Q8NEL0 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.28□□□□□ -2.2
CCDC54Q8NEL0 AC008269.2-201ENST00000561915 1105 ntBASIC1.28□□□□□ -2.2
CCDC54Q8NEL0 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC1.28□□□□□ -2.2
CCDC54Q8NEL0 MIR5696-201ENST00000578474 85 ntBASIC1.28□□□□□ -2.2
CCDC54Q8NEL0 MIR4742-201ENST00000581069 85 ntBASIC1.28□□□□□ -2.2
CCDC54Q8NEL0 AC116312.1-201ENST00000606841 314 ntBASIC1.28□□□□□ -2.2
CCDC54Q8NEL0 MIR8081-201ENST00000611533 95 ntBASIC1.28□□□□□ -2.2
CCDC54Q8NEL0 MIR7974-201ENST00000615835 79 ntBASIC1.28□□□□□ -2.2
CCDC54Q8NEL0 MIR338-201ENST00000636369 67 ntBASIC1.28□□□□□ -2.2
CCDC54Q8NEL0 AC100810.6-201ENST00000638068 285 ntBASIC1.28□□□□□ -2.2
CCDC54Q8NEL0 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
CCDC54Q8NEL0 BX322639.1-202ENST00000423987 2213 ntBASIC1.28□□□□□ -2.2
CCDC54Q8NEL0 ZNF204P-201ENST00000416749 2397 ntBASIC1.27□□□□□ -2.21
CCDC54Q8NEL0 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.27□□□□□ -2.21
CCDC54Q8NEL0 RNU6-842P-201ENST00000384269 107 ntBASIC1.27□□□□□ -2.21
CCDC54Q8NEL0 MIR504-201ENST00000385065 83 ntBASIC1.27□□□□□ -2.21
CCDC54Q8NEL0 RPL30P13-201ENST00000418873 348 ntBASIC1.27□□□□□ -2.21
CCDC54Q8NEL0 PCMTD1P1-201ENST00000455560 355 ntBASIC1.27□□□□□ -2.21
CCDC54Q8NEL0 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.27□□□□□ -2.21
CCDC54Q8NEL0 AC092989.1-201ENST00000481235 277 ntBASIC1.27□□□□□ -2.21
CCDC54Q8NEL0 YWHAEP4-201ENST00000505390 198 ntBASIC1.27□□□□□ -2.21
CCDC54Q8NEL0 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.27□□□□□ -2.21
CCDC54Q8NEL0 AC011406.1-201ENST00000512440 370 ntBASIC1.27□□□□□ -2.21
CCDC54Q8NEL0 RNU6-718P-201ENST00000516166 105 ntBASIC1.27□□□□□ -2.21
CCDC54Q8NEL0 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.27□□□□□ -2.21
CCDC54Q8NEL0 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.27□□□□□ -2.21
CCDC54Q8NEL0 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC1.27□□□□□ -2.21
CCDC54Q8NEL0 AP001485.1-201ENST00000604799 199 ntBASIC1.27□□□□□ -2.21
CCDC54Q8NEL0 RPL17P51-201ENST00000605218 238 ntBASIC1.27□□□□□ -2.21
CCDC54Q8NEL0 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.27□□□□□ -2.21
CCDC54Q8NEL0 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.27□□□□□ -2.21
CCDC54Q8NEL0 MIR3662-201ENST00000637030 95 ntBASIC1.27□□□□□ -2.21
CCDC54Q8NEL0 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC1.27□□□□□ -2.21
CCDC54Q8NEL0 SNORD115-8-201ENST00000363856 82 ntBASIC1.26□□□□□ -2.21
CCDC54Q8NEL0 SNORA63D-201ENST00000364359 132 ntBASIC1.26□□□□□ -2.21
CCDC54Q8NEL0 Y_RNA.287-201ENST00000364853 94 ntBASIC1.26□□□□□ -2.21
CCDC54Q8NEL0 SNORD115-38-201ENST00000365037 82 ntBASIC1.26□□□□□ -2.21
CCDC54Q8NEL0 Y_RNA.473-201ENST00000384333 102 ntBASIC1.26□□□□□ -2.21
CCDC54Q8NEL0 RNU6-790P-201ENST00000384479 105 ntBASIC1.26□□□□□ -2.21
CCDC54Q8NEL0 Y_RNA.533-201ENST00000384596 114 ntBASIC1.26□□□□□ -2.21
CCDC54Q8NEL0 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
CCDC54Q8NEL0 RPL21P111-201ENST00000418453 477 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms