Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AL139095.1-201ENST00000404326 391 ntBASIC3.65□□□□□ -1.83
USHBP1Q8N6Y0 AC019205.3-201ENST00000424573 156 ntBASIC3.65□□□□□ -1.83
USHBP1Q8N6Y0 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC3.65□□□□□ -1.83
USHBP1Q8N6Y0 AC091021.1-201ENST00000468051 388 ntBASIC3.65□□□□□ -1.83
USHBP1Q8N6Y0 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.65□□□□□ -1.83
USHBP1Q8N6Y0 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC3.65□□□□□ -1.83
USHBP1Q8N6Y0 AP005660.1-201ENST00000522972 293 ntBASIC3.65□□□□□ -1.83
USHBP1Q8N6Y0 AC115990.1-201ENST00000526957 301 ntBASIC3.65□□□□□ -1.83
USHBP1Q8N6Y0 MRPS18CP4-201ENST00000535821 231 ntBASIC3.65□□□□□ -1.83
USHBP1Q8N6Y0 AC006199.1-201ENST00000548728 219 ntBASIC3.65□□□□□ -1.83
USHBP1Q8N6Y0 AC018448.1-201ENST00000552843 316 ntBASIC3.65□□□□□ -1.83
USHBP1Q8N6Y0 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.65□□□□□ -1.83
USHBP1Q8N6Y0 AL078605.1-201ENST00000603529 500 ntBASIC3.65□□□□□ -1.83
USHBP1Q8N6Y0 AC005828.6-201ENST00000606610 232 ntBASIC3.65□□□□□ -1.83
USHBP1Q8N6Y0 MIR6817-201ENST00000615588 66 ntBASIC3.65□□□□□ -1.83
USHBP1Q8N6Y0 RBBP8P1-201ENST00000449447 1844 ntBASIC3.65□□□□□ -1.83
USHBP1Q8N6Y0 BX322639.1-202ENST00000423987 2213 ntBASIC3.64□□□□□ -1.83
USHBP1Q8N6Y0 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.64□□□□□ -1.83
USHBP1Q8N6Y0 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC3.64□□□□□ -1.83
USHBP1Q8N6Y0 RNA5SP68-201ENST00000363885 119 ntBASIC3.64□□□□□ -1.83
USHBP1Q8N6Y0 RNA5SP240-201ENST00000365355 128 ntBASIC3.64□□□□□ -1.83
USHBP1Q8N6Y0 RNU6-1310P-201ENST00000384153 107 ntBASIC3.64□□□□□ -1.83
USHBP1Q8N6Y0 MIR613-201ENST00000385248 95 ntBASIC3.64□□□□□ -1.83
USHBP1Q8N6Y0 MIR1261-201ENST00000408659 82 ntBASIC3.64□□□□□ -1.83
USHBP1Q8N6Y0 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC3.64□□□□□ -1.83
USHBP1Q8N6Y0 UQCRBP2-201ENST00000447827 297 ntBASIC3.64□□□□□ -1.83
USHBP1Q8N6Y0 RNU6-625P-201ENST00000459412 107 ntBASIC3.64□□□□□ -1.83
USHBP1Q8N6Y0 AL049830.2-201ENST00000480072 201 ntBASIC3.64□□□□□ -1.83
USHBP1Q8N6Y0 AC006445.2-201ENST00000510061 472 ntBASIC3.64□□□□□ -1.83
USHBP1Q8N6Y0 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.64□□□□□ -1.83
USHBP1Q8N6Y0 RNY3P16-201ENST00000516338 101 ntBASIC3.64□□□□□ -1.83
USHBP1Q8N6Y0 RNA5SP148-201ENST00000516527 94 ntBASIC3.64□□□□□ -1.83
USHBP1Q8N6Y0 SNORA31.21-201ENST00000517180 77 ntBASIC3.64□□□□□ -1.83
USHBP1Q8N6Y0 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC3.64□□□□□ -1.83
USHBP1Q8N6Y0 MIR4435-1-201ENST00000582552 80 ntBASIC3.64□□□□□ -1.83
USHBP1Q8N6Y0 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.64□□□□□ -1.83
USHBP1Q8N6Y0 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.64□□□□□ -1.83
USHBP1Q8N6Y0 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
USHBP1Q8N6Y0 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
USHBP1Q8N6Y0 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.64□□□□□ -1.83
USHBP1Q8N6Y0 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
USHBP1Q8N6Y0 Y_RNA.217-201ENST00000364214 105 ntBASIC3.63□□□□□ -1.83
USHBP1Q8N6Y0 RNU6-923P-201ENST00000364753 107 ntBASIC3.63□□□□□ -1.83
USHBP1Q8N6Y0 Y_RNA.308-201ENST00000365043 101 ntBASIC3.63□□□□□ -1.83
USHBP1Q8N6Y0 RNU6-245P-201ENST00000384020 107 ntBASIC3.63□□□□□ -1.83
USHBP1Q8N6Y0 MIR512-1-201ENST00000384913 84 ntBASIC3.63□□□□□ -1.83
USHBP1Q8N6Y0 MIR9-1-201ENST00000385198 89 ntBASIC3.63□□□□□ -1.83
USHBP1Q8N6Y0 Y_RNA.597-201ENST00000410463 100 ntBASIC3.63□□□□□ -1.83
USHBP1Q8N6Y0 AC009963.1-201ENST00000417265 157 ntBASIC3.63□□□□□ -1.83
USHBP1Q8N6Y0 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.63□□□□□ -1.83
USHBP1Q8N6Y0 Y_RNA.641-201ENST00000459414 105 ntBASIC3.63□□□□□ -1.83
USHBP1Q8N6Y0 AC003982.1-202ENST00000469928 248 ntBASIC3.63□□□□□ -1.83
USHBP1Q8N6Y0 AC090525.1-201ENST00000479116 478 ntBASIC3.63□□□□□ -1.83
USHBP1Q8N6Y0 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
USHBP1Q8N6Y0 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.63□□□□□ -1.83
USHBP1Q8N6Y0 AC055872.1-201ENST00000570978 278 ntBASIC3.63□□□□□ -1.83
USHBP1Q8N6Y0 MIR3609-201ENST00000582661 80 ntBASIC3.63□□□□□ -1.83
USHBP1Q8N6Y0 AL356575.1-201ENST00000603008 283 ntBASIC3.63□□□□□ -1.83
USHBP1Q8N6Y0 AC073308.1-201ENST00000623696 305 ntBASIC3.63□□□□□ -1.83
USHBP1Q8N6Y0 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.63□□□□□ -1.83
USHBP1Q8N6Y0 AC099654.7-201ENST00000635788 2127 ntBASIC3.62□□□□□ -1.83
USHBP1Q8N6Y0 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
USHBP1Q8N6Y0 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
USHBP1Q8N6Y0 AC002543.1-201ENST00000299783 1954 ntBASIC3.62□□□□□ -1.83
USHBP1Q8N6Y0 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.62□□□□□ -1.83
USHBP1Q8N6Y0 RNA5SP383-201ENST00000362934 120 ntBASIC3.62□□□□□ -1.83
USHBP1Q8N6Y0 SNORD113-1-201ENST00000365321 69 ntBASIC3.62□□□□□ -1.83
USHBP1Q8N6Y0 Y_RNA.435-201ENST00000384095 112 ntBASIC3.62□□□□□ -1.83
USHBP1Q8N6Y0 RNU6-793P-201ENST00000384233 104 ntBASIC3.62□□□□□ -1.83
USHBP1Q8N6Y0 RNU6-394P-201ENST00000410735 107 ntBASIC3.62□□□□□ -1.83
USHBP1Q8N6Y0 UQCRHP3-201ENST00000451503 251 ntBASIC3.62□□□□□ -1.83
USHBP1Q8N6Y0 TRBV12-1-201ENST00000479785 344 ntBASIC3.62□□□□□ -1.83
USHBP1Q8N6Y0 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC3.62□□□□□ -1.83
USHBP1Q8N6Y0 AC008413.1-201ENST00000511864 177 ntBASIC3.62□□□□□ -1.83
USHBP1Q8N6Y0 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.62□□□□□ -1.83
USHBP1Q8N6Y0 SNORA31.16-201ENST00000516773 139 ntBASIC3.62□□□□□ -1.83
USHBP1Q8N6Y0 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC3.62□□□□□ -1.83
USHBP1Q8N6Y0 MIR3144-201ENST00000579460 79 ntBASIC3.62□□□□□ -1.83
USHBP1Q8N6Y0 AC004467.1-201ENST00000615678 330 ntBASIC3.62□□□□□ -1.83
USHBP1Q8N6Y0 AC068831.7-201ENST00000616954 363 ntBASIC3.62□□□□□ -1.83
USHBP1Q8N6Y0 AC002076.2-201ENST00000617362 122 ntBASIC3.62□□□□□ -1.83
USHBP1Q8N6Y0 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
USHBP1Q8N6Y0 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
USHBP1Q8N6Y0 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
USHBP1Q8N6Y0 AL359854.1-201ENST00000614203 1594 ntBASIC3.61□□□□□ -1.83
USHBP1Q8N6Y0 Y_RNA.262-201ENST00000364641 102 ntBASIC3.61□□□□□ -1.83
USHBP1Q8N6Y0 RNU4-56P-201ENST00000364700 142 ntBASIC3.61□□□□□ -1.83
USHBP1Q8N6Y0 Y_RNA.291-201ENST00000364886 113 ntBASIC3.61□□□□□ -1.83
USHBP1Q8N6Y0 SNORA1.3-201ENST00000384676 136 ntBASIC3.61□□□□□ -1.83
USHBP1Q8N6Y0 MIR181A2-201ENST00000384863 110 ntBASIC3.61□□□□□ -1.83
USHBP1Q8N6Y0 EI24P2-201ENST00000397776 1076 ntBASIC3.61□□□□□ -1.83
USHBP1Q8N6Y0 AL512633.1-201ENST00000399931 655 ntBASIC3.61□□□□□ -1.83
USHBP1Q8N6Y0 MIR320B2-201ENST00000408479 138 ntBASIC3.61□□□□□ -1.83
USHBP1Q8N6Y0 RNA5SP508-201ENST00000411327 119 ntBASIC3.61□□□□□ -1.83
USHBP1Q8N6Y0 AC024067.1-201ENST00000426199 223 ntBASIC3.61□□□□□ -1.83
USHBP1Q8N6Y0 ARF4P2-201ENST00000430209 526 ntBASIC3.61□□□□□ -1.83
USHBP1Q8N6Y0 AL161651.1-201ENST00000440882 223 ntBASIC3.61□□□□□ -1.83
USHBP1Q8N6Y0 AL513328.1-201ENST00000446460 224 ntBASIC3.61□□□□□ -1.83
USHBP1Q8N6Y0 RNU7-200P-201ENST00000516105 62 ntBASIC3.61□□□□□ -1.83
USHBP1Q8N6Y0 CYP4A27P-201ENST00000567218 190 ntBASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms