Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
NPAS3Q8IXF0 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
NPAS3Q8IXF0 RNU1-73P-201ENST00000383971 164 ntBASIC4.08□□□□□ -1.76
NPAS3Q8IXF0 RNU6-629P-201ENST00000384061 103 ntBASIC4.08□□□□□ -1.76
NPAS3Q8IXF0 SNORD116-22-201ENST00000384430 92 ntBASIC4.08□□□□□ -1.76
NPAS3Q8IXF0 AL451046.2-201ENST00000403074 277 ntBASIC4.08□□□□□ -1.76
NPAS3Q8IXF0 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.08□□□□□ -1.76
NPAS3Q8IXF0 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.08□□□□□ -1.76
NPAS3Q8IXF0 AC069285.2-201ENST00000440210 275 ntBASIC4.08□□□□□ -1.76
NPAS3Q8IXF0 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.08□□□□□ -1.76
NPAS3Q8IXF0 APOA2-205ENST00000468465 421 ntTSL 2 BASIC4.08□□□□□ -1.76
NPAS3Q8IXF0 RNU6ATAC12P-201ENST00000516542 115 ntBASIC4.08□□□□□ -1.76
NPAS3Q8IXF0 RNU7-149P-201ENST00000516739 59 ntBASIC4.08□□□□□ -1.76
NPAS3Q8IXF0 POC1B-211ENST00000549504 581 ntTSL 5 BASIC4.08□□□□□ -1.76
NPAS3Q8IXF0 MIR4716-201ENST00000579628 84 ntBASIC4.08□□□□□ -1.76
NPAS3Q8IXF0 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC4.08□□□□□ -1.76
NPAS3Q8IXF0 AC007179.3-201ENST00000604976 235 ntBASIC4.08□□□□□ -1.76
NPAS3Q8IXF0 AL162726.3-218ENST00000636401 95 ntBASIC4.08□□□□□ -1.76
NPAS3Q8IXF0 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
NPAS3Q8IXF0 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.08□□□□□ -1.76
NPAS3Q8IXF0 OFD1P6Y-202ENST00000451061 2724 ntBASIC4.08□□□□□ -1.76
NPAS3Q8IXF0 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC4.08□□□□□ -1.76
NPAS3Q8IXF0 AC010889.1-201ENST00000566193 2666 ntBASIC4.08□□□□□ -1.76
NPAS3Q8IXF0 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
NPAS3Q8IXF0 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.07□□□□□ -1.76
NPAS3Q8IXF0 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.07□□□□□ -1.76
NPAS3Q8IXF0 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
NPAS3Q8IXF0 Y_RNA.66-201ENST00000362862 102 ntBASIC4.07□□□□□ -1.76
NPAS3Q8IXF0 RNU1-72P-201ENST00000362976 153 ntBASIC4.07□□□□□ -1.76
NPAS3Q8IXF0 RNU6-778P-201ENST00000363269 103 ntBASIC4.07□□□□□ -1.76
NPAS3Q8IXF0 RNU6-1305P-201ENST00000364353 104 ntBASIC4.07□□□□□ -1.76
NPAS3Q8IXF0 SNORA67.2-201ENST00000384300 149 ntBASIC4.07□□□□□ -1.76
NPAS3Q8IXF0 MIR181A2-201ENST00000384863 110 ntBASIC4.07□□□□□ -1.76
NPAS3Q8IXF0 MIR548D2-201ENST00000384955 97 ntBASIC4.07□□□□□ -1.76
NPAS3Q8IXF0 RNU6-816P-201ENST00000390914 107 ntBASIC4.07□□□□□ -1.76
NPAS3Q8IXF0 RNU6-1268P-201ENST00000391214 107 ntBASIC4.07□□□□□ -1.76
NPAS3Q8IXF0 RNU6-1239P-201ENST00000391310 107 ntBASIC4.07□□□□□ -1.76
NPAS3Q8IXF0 ATP6V0E1P1-201ENST00000412537 226 ntBASIC4.07□□□□□ -1.76
NPAS3Q8IXF0 HMGN2P30-201ENST00000423237 256 ntBASIC4.07□□□□□ -1.76
NPAS3Q8IXF0 AL591419.1-201ENST00000427423 339 ntBASIC4.07□□□□□ -1.76
NPAS3Q8IXF0 RPL37P4-201ENST00000448908 268 ntBASIC4.07□□□□□ -1.76
NPAS3Q8IXF0 AL133162.1-201ENST00000463228 453 ntBASIC4.07□□□□□ -1.76
NPAS3Q8IXF0 AC110768.1-201ENST00000509222 400 ntBASIC4.07□□□□□ -1.76
NPAS3Q8IXF0 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.07□□□□□ -1.76
NPAS3Q8IXF0 MIR548Z-201ENST00000584743 97 ntBASIC4.07□□□□□ -1.76
NPAS3Q8IXF0 AL451007.1-201ENST00000595491 289 ntBASIC4.07□□□□□ -1.76
NPAS3Q8IXF0 AL034555.1-201ENST00000604816 211 ntBASIC4.07□□□□□ -1.76
NPAS3Q8IXF0 AC012531.4-201ENST00000616509 177 ntBASIC4.07□□□□□ -1.76
NPAS3Q8IXF0 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
NPAS3Q8IXF0 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.07□□□□□ -1.76
NPAS3Q8IXF0 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
NPAS3Q8IXF0 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
NPAS3Q8IXF0 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC4.06□□□□□ -1.76
NPAS3Q8IXF0 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
NPAS3Q8IXF0 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
NPAS3Q8IXF0 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
NPAS3Q8IXF0 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
NPAS3Q8IXF0 RNU4-13P-201ENST00000364019 141 ntBASIC4.06□□□□□ -1.76
NPAS3Q8IXF0 MIR708-201ENST00000390708 88 ntBASIC4.06□□□□□ -1.76
NPAS3Q8IXF0 MIR1290-201ENST00000408735 78 ntBASIC4.06□□□□□ -1.76
NPAS3Q8IXF0 RNA5SP390-201ENST00000410191 113 ntBASIC4.06□□□□□ -1.76
NPAS3Q8IXF0 HMGN2P31-201ENST00000432430 273 ntBASIC4.06□□□□□ -1.76
NPAS3Q8IXF0 RN7SL807P-201ENST00000470923 297 ntBASIC4.06□□□□□ -1.76
NPAS3Q8IXF0 SNORA31.20-201ENST00000517111 133 ntBASIC4.06□□□□□ -1.76
NPAS3Q8IXF0 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC4.06□□□□□ -1.76
NPAS3Q8IXF0 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.06□□□□□ -1.76
NPAS3Q8IXF0 HSPE1P7-201ENST00000604681 321 ntBASIC4.06□□□□□ -1.76
NPAS3Q8IXF0 FAS-AS1.2-201ENST00000620386 170 ntBASIC4.06□□□□□ -1.76
NPAS3Q8IXF0 U2.21-201ENST00000637295 81 ntBASIC4.06□□□□□ -1.76
NPAS3Q8IXF0 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
NPAS3Q8IXF0 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.06□□□□□ -1.76
NPAS3Q8IXF0 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.06□□□□□ -1.76
NPAS3Q8IXF0 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
NPAS3Q8IXF0 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC4.05□□□□□ -1.76
NPAS3Q8IXF0 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
NPAS3Q8IXF0 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
NPAS3Q8IXF0 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.05□□□□□ -1.76
NPAS3Q8IXF0 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
NPAS3Q8IXF0 MIR448-201ENST00000362131 111 ntBASIC4.05□□□□□ -1.76
NPAS3Q8IXF0 Y_RNA.426-201ENST00000384068 113 ntBASIC4.05□□□□□ -1.76
NPAS3Q8IXF0 RNU6-622P-201ENST00000384272 103 ntBASIC4.05□□□□□ -1.76
NPAS3Q8IXF0 MIR513A2-201ENST00000385249 127 ntBASIC4.05□□□□□ -1.76
NPAS3Q8IXF0 Y_RNA.601-201ENST00000410500 113 ntBASIC4.05□□□□□ -1.76
NPAS3Q8IXF0 BTF3P4-201ENST00000418852 495 ntBASIC4.05□□□□□ -1.76
NPAS3Q8IXF0 AL139247.1-201ENST00000422768 325 ntBASIC4.05□□□□□ -1.76
NPAS3Q8IXF0 HMGN2P20-201ENST00000437531 273 ntBASIC4.05□□□□□ -1.76
NPAS3Q8IXF0 RPS26P55-201ENST00000471178 356 ntBASIC4.05□□□□□ -1.76
NPAS3Q8IXF0 RN7SL271P-201ENST00000487601 295 ntBASIC4.05□□□□□ -1.76
NPAS3Q8IXF0 VWA8P1-201ENST00000510889 176 ntBASIC4.05□□□□□ -1.76
NPAS3Q8IXF0 RNU6-1270P-201ENST00000517128 108 ntBASIC4.05□□□□□ -1.76
NPAS3Q8IXF0 SUMO2P16-201ENST00000519475 264 ntBASIC4.05□□□□□ -1.76
NPAS3Q8IXF0 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
NPAS3Q8IXF0 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.05□□□□□ -1.76
NPAS3Q8IXF0 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
NPAS3Q8IXF0 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.05□□□□□ -1.76
NPAS3Q8IXF0 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.05□□□□□ -1.76
NPAS3Q8IXF0 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.05□□□□□ -1.76
NPAS3Q8IXF0 AC118273.1-201ENST00000525324 3006 ntBASIC4.05□□□□□ -1.76
NPAS3Q8IXF0 AC068254.2-201ENST00000623938 3577 ntBASIC4.04□□□□□ -1.76
NPAS3Q8IXF0 FAM35CP-201ENST00000554755 2470 ntBASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 132.7 ms