Protein–RNA interactions for Protein: Q86UA1

PRPF39, Pre-mRNA-processing factor 39, humanhuman

Known RBP Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39Q86UA1 CENPCP1-201ENST00000533085 2578 ntBASIC1.97□□□□□ -2.09
PRPF39Q86UA1 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
PRPF39Q86UA1 MIR487A-201ENST00000385009 80 ntBASIC1.97□□□□□ -2.09
PRPF39Q86UA1 MIR153-2-201ENST00000385225 87 ntBASIC1.97□□□□□ -2.09
PRPF39Q86UA1 SNORA40.18-201ENST00000391200 128 ntBASIC1.97□□□□□ -2.09
PRPF39Q86UA1 RNU6-1148P-201ENST00000410992 104 ntBASIC1.97□□□□□ -2.09
PRPF39Q86UA1 RPL21P111-201ENST00000418453 477 ntBASIC1.97□□□□□ -2.09
PRPF39Q86UA1 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.97□□□□□ -2.09
PRPF39Q86UA1 Z82188.1-201ENST00000436709 154 ntBASIC1.97□□□□□ -2.09
PRPF39Q86UA1 HMGN2P23-201ENST00000456759 269 ntBASIC1.97□□□□□ -2.09
PRPF39Q86UA1 Y_RNA.638-201ENST00000459374 113 ntBASIC1.97□□□□□ -2.09
PRPF39Q86UA1 RNU1-117P-201ENST00000517041 158 ntBASIC1.97□□□□□ -2.09
PRPF39Q86UA1 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.97□□□□□ -2.09
PRPF39Q86UA1 SNORA59B-202ENST00000578183 701 ntBASIC1.97□□□□□ -2.09
PRPF39Q86UA1 AC018638.8-201ENST00000588755 281 ntBASIC1.97□□□□□ -2.09
PRPF39Q86UA1 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.97□□□□□ -2.09
PRPF39Q86UA1 DLEU2_5.1-201ENST00000615567 84 ntBASIC1.97□□□□□ -2.09
PRPF39Q86UA1 AC098679.4-201ENST00000624241 654 ntBASIC1.97□□□□□ -2.09
PRPF39Q86UA1 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.97□□□□□ -2.09
PRPF39Q86UA1 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
PRPF39Q86UA1 BX322639.1-202ENST00000423987 2213 ntBASIC1.97□□□□□ -2.09
PRPF39Q86UA1 RNA5SP99-201ENST00000364020 114 ntBASIC1.96□□□□□ -2.1
PRPF39Q86UA1 RNU6-510P-201ENST00000391239 108 ntBASIC1.96□□□□□ -2.1
PRPF39Q86UA1 RNU2-20P-201ENST00000410425 191 ntBASIC1.96□□□□□ -2.1
PRPF39Q86UA1 AC009310.1-201ENST00000414414 451 ntBASIC1.96□□□□□ -2.1
PRPF39Q86UA1 MTND1P4-201ENST00000435196 415 ntBASIC1.96□□□□□ -2.1
PRPF39Q86UA1 PPP1R2P5-201ENST00000457256 603 ntBASIC1.96□□□□□ -2.1
PRPF39Q86UA1 snoU13.30-201ENST00000458951 104 ntBASIC1.96□□□□□ -2.1
PRPF39Q86UA1 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.96□□□□□ -2.1
PRPF39Q86UA1 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.96□□□□□ -2.1
PRPF39Q86UA1 RNU6-1041P-201ENST00000516254 102 ntBASIC1.96□□□□□ -2.1
PRPF39Q86UA1 RNU6-948P-201ENST00000516374 107 ntBASIC1.96□□□□□ -2.1
PRPF39Q86UA1 RNU2-34P-201ENST00000516534 121 ntBASIC1.96□□□□□ -2.1
PRPF39Q86UA1 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.96□□□□□ -2.1
PRPF39Q86UA1 GNAI2P1-201ENST00000541815 315 ntBASIC1.96□□□□□ -2.1
PRPF39Q86UA1 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC1.96□□□□□ -2.1
PRPF39Q86UA1 AC010928.2-201ENST00000588017 287 ntBASIC1.96□□□□□ -2.1
PRPF39Q86UA1 AC009248.2-201ENST00000619826 254 ntBASIC1.96□□□□□ -2.1
PRPF39Q86UA1 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.96□□□□□ -2.1
PRPF39Q86UA1 SNORD115-32-201ENST00000364079 82 ntBASIC1.95□□□□□ -2.1
PRPF39Q86UA1 Y_RNA.319-201ENST00000365138 92 ntBASIC1.95□□□□□ -2.1
PRPF39Q86UA1 U8.10-201ENST00000384260 133 ntBASIC1.95□□□□□ -2.1
PRPF39Q86UA1 RNA5SP100-201ENST00000410903 110 ntBASIC1.95□□□□□ -2.1
PRPF39Q86UA1 RNA5SP59-201ENST00000410922 110 ntBASIC1.95□□□□□ -2.1
PRPF39Q86UA1 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC1.95□□□□□ -2.1
PRPF39Q86UA1 NDUFAF4P4-201ENST00000454883 502 ntBASIC1.95□□□□□ -2.1
PRPF39Q86UA1 AC067942.3-201ENST00000512025 362 ntBASIC1.95□□□□□ -2.1
PRPF39Q86UA1 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.95□□□□□ -2.1
PRPF39Q86UA1 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.95□□□□□ -2.1
PRPF39Q86UA1 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC1.95□□□□□ -2.1
PRPF39Q86UA1 AC110588.1-201ENST00000559699 137 ntBASIC1.95□□□□□ -2.1
PRPF39Q86UA1 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.95□□□□□ -2.1
PRPF39Q86UA1 AC069114.2-201ENST00000604699 304 ntBASIC1.95□□□□□ -2.1
PRPF39Q86UA1 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.95□□□□□ -2.1
PRPF39Q86UA1 MIR6845-201ENST00000613182 61 ntBASIC1.95□□□□□ -2.1
PRPF39Q86UA1 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.95□□□□□ -2.1
PRPF39Q86UA1 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.94□□□□□ -2.1
PRPF39Q86UA1 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
PRPF39Q86UA1 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
PRPF39Q86UA1 AC016717.1-201ENST00000448918 286 ntBASIC1.94□□□□□ -2.1
PRPF39Q86UA1 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.94□□□□□ -2.1
PRPF39Q86UA1 Y_RNA.682-201ENST00000516457 100 ntBASIC1.94□□□□□ -2.1
PRPF39Q86UA1 RNU6-856P-201ENST00000516959 98 ntBASIC1.94□□□□□ -2.1
PRPF39Q86UA1 AF235103.2-201ENST00000525753 346 ntBASIC1.94□□□□□ -2.1
PRPF39Q86UA1 AC022254.1-201ENST00000567857 235 ntBASIC1.94□□□□□ -2.1
PRPF39Q86UA1 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.94□□□□□ -2.1
PRPF39Q86UA1 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.94□□□□□ -2.1
PRPF39Q86UA1 AL078596.1-201ENST00000624856 447 ntBASIC1.94□□□□□ -2.1
PRPF39Q86UA1 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC1.94□□□□□ -2.1
PRPF39Q86UA1 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
PRPF39Q86UA1 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.94□□□□□ -2.1
PRPF39Q86UA1 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
PRPF39Q86UA1 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.94□□□□□ -2.1
PRPF39Q86UA1 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
PRPF39Q86UA1 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
PRPF39Q86UA1 RNU6-862P-201ENST00000362804 105 ntBASIC1.93□□□□□ -2.1
PRPF39Q86UA1 RNU6ATAC25P-201ENST00000408798 117 ntBASIC1.93□□□□□ -2.1
PRPF39Q86UA1 RNU2-7P-201ENST00000410794 178 ntBASIC1.93□□□□□ -2.1
PRPF39Q86UA1 AC004866.1-201ENST00000411748 78 ntBASIC1.93□□□□□ -2.1
PRPF39Q86UA1 RPL30P16-201ENST00000419341 429 ntBASIC1.93□□□□□ -2.1
PRPF39Q86UA1 MTCO3P46-201ENST00000425787 232 ntBASIC1.93□□□□□ -2.1
PRPF39Q86UA1 MTND1P17-201ENST00000448961 204 ntBASIC1.93□□□□□ -2.1
PRPF39Q86UA1 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.93□□□□□ -2.1
PRPF39Q86UA1 HMGB3P17-201ENST00000504195 649 ntBASIC1.93□□□□□ -2.1
PRPF39Q86UA1 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.93□□□□□ -2.1
PRPF39Q86UA1 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC1.93□□□□□ -2.1
PRPF39Q86UA1 RNU7-175P-201ENST00000515915 61 ntBASIC1.93□□□□□ -2.1
PRPF39Q86UA1 SNORA25.14-201ENST00000516481 132 ntBASIC1.93□□□□□ -2.1
PRPF39Q86UA1 SNORA44.1-201ENST00000517031 108 ntBASIC1.93□□□□□ -2.1
PRPF39Q86UA1 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.93□□□□□ -2.1
PRPF39Q86UA1 AC080078.2-201ENST00000603766 501 ntBASIC1.93□□□□□ -2.1
PRPF39Q86UA1 U6atac.1-201ENST00000616025 117 ntBASIC1.93□□□□□ -2.1
PRPF39Q86UA1 AC022513.1-201ENST00000624512 117 ntBASIC1.93□□□□□ -2.1
PRPF39Q86UA1 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.93□□□□□ -2.1
PRPF39Q86UA1 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
PRPF39Q86UA1 RNU1-96P-201ENST00000364163 162 ntBASIC1.92□□□□□ -2.1
PRPF39Q86UA1 RNU6-245P-201ENST00000384020 107 ntBASIC1.92□□□□□ -2.1
PRPF39Q86UA1 RNU6-975P-201ENST00000384296 105 ntBASIC1.92□□□□□ -2.1
PRPF39Q86UA1 RNU6-1235P-201ENST00000384559 107 ntBASIC1.92□□□□□ -2.1
PRPF39Q86UA1 Y_RNA.533-201ENST00000384596 114 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 114.6 ms