Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC3.15□□□□□ -1.91
USP39Q53GS9 CARD18-203ENST00000532895 422 ntTSL 2 BASIC3.15□□□□□ -1.91
USP39Q53GS9 AC233702.2-202ENST00000562547 291 ntBASIC3.15□□□□□ -1.91
USP39Q53GS9 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
USP39Q53GS9 MIR3124-201ENST00000582636 67 ntBASIC3.15□□□□□ -1.91
USP39Q53GS9 HSPE1P7-201ENST00000604681 321 ntBASIC3.15□□□□□ -1.91
USP39Q53GS9 uc_338.25-201ENST00000613756 156 ntBASIC3.15□□□□□ -1.91
USP39Q53GS9 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.15□□□□□ -1.91
USP39Q53GS9 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
USP39Q53GS9 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
USP39Q53GS9 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
USP39Q53GS9 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.15□□□□□ -1.91
USP39Q53GS9 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
USP39Q53GS9 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
USP39Q53GS9 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.14□□□□□ -1.91
USP39Q53GS9 ZNF204P-201ENST00000416749 2397 ntBASIC3.14□□□□□ -1.91
USP39Q53GS9 Y_RNA.101-201ENST00000363154 102 ntBASIC3.14□□□□□ -1.91
USP39Q53GS9 RNU4-80P-201ENST00000363200 141 ntBASIC3.14□□□□□ -1.91
USP39Q53GS9 RNU6-873P-201ENST00000363833 107 ntBASIC3.14□□□□□ -1.91
USP39Q53GS9 Y_RNA.497-201ENST00000384447 98 ntBASIC3.14□□□□□ -1.91
USP39Q53GS9 AL031121.1-201ENST00000406553 254 ntBASIC3.14□□□□□ -1.91
USP39Q53GS9 AL357139.1-201ENST00000407792 426 ntBASIC3.14□□□□□ -1.91
USP39Q53GS9 RNA5SP229-201ENST00000410809 99 ntBASIC3.14□□□□□ -1.91
USP39Q53GS9 RNU6-1245P-201ENST00000411130 106 ntBASIC3.14□□□□□ -1.91
USP39Q53GS9 RNU6-1199P-201ENST00000411249 104 ntBASIC3.14□□□□□ -1.91
USP39Q53GS9 EEF1A1P41-201ENST00000414667 207 ntBASIC3.14□□□□□ -1.91
USP39Q53GS9 AC138623.1-201ENST00000418060 216 ntBASIC3.14□□□□□ -1.91
USP39Q53GS9 AL139281.1-201ENST00000422120 335 ntBASIC3.14□□□□□ -1.91
USP39Q53GS9 RPL23AP58-201ENST00000440453 469 ntBASIC3.14□□□□□ -1.91
USP39Q53GS9 GPM6BP3-201ENST00000442797 145 ntBASIC3.14□□□□□ -1.91
USP39Q53GS9 AC005042.3-201ENST00000453230 174 ntBASIC3.14□□□□□ -1.91
USP39Q53GS9 snoU13.6-201ENST00000458785 104 ntBASIC3.14□□□□□ -1.91
USP39Q53GS9 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.14□□□□□ -1.91
USP39Q53GS9 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.14□□□□□ -1.91
USP39Q53GS9 MIR3145-201ENST00000580727 82 ntBASIC3.14□□□□□ -1.91
USP39Q53GS9 ELOCP29-201ENST00000588193 334 ntBASIC3.14□□□□□ -1.91
USP39Q53GS9 AL008718.3-201ENST00000610217 321 ntBASIC3.14□□□□□ -1.91
USP39Q53GS9 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.14□□□□□ -1.91
USP39Q53GS9 MTND1P7-201ENST00000632801 297 ntBASIC3.14□□□□□ -1.91
USP39Q53GS9 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
USP39Q53GS9 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.14□□□□□ -1.91
USP39Q53GS9 AC110491.1-201ENST00000562191 2010 ntBASIC3.14□□□□□ -1.91
USP39Q53GS9 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.13□□□□□ -1.91
USP39Q53GS9 AC099654.7-201ENST00000635788 2127 ntBASIC3.13□□□□□ -1.91
USP39Q53GS9 RNU6-818P-201ENST00000364837 108 ntBASIC3.13□□□□□ -1.91
USP39Q53GS9 RNU1-73P-201ENST00000383971 164 ntBASIC3.13□□□□□ -1.91
USP39Q53GS9 SNORA22C-201ENST00000384614 134 ntBASIC3.13□□□□□ -1.91
USP39Q53GS9 Y_RNA.571-201ENST00000384753 98 ntBASIC3.13□□□□□ -1.91
USP39Q53GS9 MIR544A-201ENST00000384855 91 ntBASIC3.13□□□□□ -1.91
USP39Q53GS9 MIR186-201ENST00000384988 86 ntBASIC3.13□□□□□ -1.91
USP39Q53GS9 FTH1P15-201ENST00000406984 280 ntBASIC3.13□□□□□ -1.91
USP39Q53GS9 RN7SKP61-201ENST00000410642 295 ntBASIC3.13□□□□□ -1.91
USP39Q53GS9 AL162725.1-201ENST00000435405 301 ntBASIC3.13□□□□□ -1.91
USP39Q53GS9 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC3.13□□□□□ -1.91
USP39Q53GS9 RPS27P29-201ENST00000463110 252 ntBASIC3.13□□□□□ -1.91
USP39Q53GS9 AC006445.2-201ENST00000510061 472 ntBASIC3.13□□□□□ -1.91
USP39Q53GS9 RNA5SP217-201ENST00000515959 91 ntBASIC3.13□□□□□ -1.91
USP39Q53GS9 SNORA31.23-201ENST00000517219 133 ntBASIC3.13□□□□□ -1.91
USP39Q53GS9 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC3.13□□□□□ -1.91
USP39Q53GS9 HSPE1P4-201ENST00000550617 308 ntBASIC3.13□□□□□ -1.91
USP39Q53GS9 AC019159.1-201ENST00000605094 187 ntBASIC3.13□□□□□ -1.91
USP39Q53GS9 AL138963.2-201ENST00000605137 226 ntBASIC3.13□□□□□ -1.91
USP39Q53GS9 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.13□□□□□ -1.91
USP39Q53GS9 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
USP39Q53GS9 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
USP39Q53GS9 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
USP39Q53GS9 RNU6-1141P-201ENST00000364520 107 ntBASIC3.12□□□□□ -1.91
USP39Q53GS9 Y_RNA.400-201ENST00000383963 111 ntBASIC3.12□□□□□ -1.91
USP39Q53GS9 RNU6-1168P-201ENST00000390831 104 ntBASIC3.12□□□□□ -1.91
USP39Q53GS9 Y_RNA.595-201ENST00000410403 105 ntBASIC3.12□□□□□ -1.91
USP39Q53GS9 RN7SKP284-201ENST00000411002 343 ntBASIC3.12□□□□□ -1.91
USP39Q53GS9 RPL26P27-201ENST00000414397 437 ntBASIC3.12□□□□□ -1.91
USP39Q53GS9 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.12□□□□□ -1.91
USP39Q53GS9 RPS15AP5-201ENST00000436276 388 ntBASIC3.12□□□□□ -1.91
USP39Q53GS9 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC3.12□□□□□ -1.91
USP39Q53GS9 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.12□□□□□ -1.91
USP39Q53GS9 RNU6-62P-201ENST00000516526 102 ntBASIC3.12□□□□□ -1.91
USP39Q53GS9 RNU6-1198P-201ENST00000516904 67 ntBASIC3.12□□□□□ -1.91
USP39Q53GS9 SNORA31.26-201ENST00000517250 137 ntBASIC3.12□□□□□ -1.91
USP39Q53GS9 AC068657.1-201ENST00000520807 306 ntBASIC3.12□□□□□ -1.91
USP39Q53GS9 GTF3AP2-201ENST00000557014 266 ntBASIC3.12□□□□□ -1.91
USP39Q53GS9 MIR3609-201ENST00000582661 80 ntBASIC3.12□□□□□ -1.91
USP39Q53GS9 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC3.12□□□□□ -1.91
USP39Q53GS9 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC3.12□□□□□ -1.91
USP39Q53GS9 AC010999.1-201ENST00000611856 324 ntBASIC3.12□□□□□ -1.91
USP39Q53GS9 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
USP39Q53GS9 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.12□□□□□ -1.91
USP39Q53GS9 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC3.12□□□□□ -1.91
USP39Q53GS9 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
USP39Q53GS9 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
USP39Q53GS9 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC3.11□□□□□ -1.91
USP39Q53GS9 MIR449A-201ENST00000362113 91 ntBASIC3.11□□□□□ -1.91
USP39Q53GS9 MIR22-201ENST00000362190 85 ntBASIC3.11□□□□□ -1.91
USP39Q53GS9 Y_RNA.343-201ENST00000365354 112 ntBASIC3.11□□□□□ -1.91
USP39Q53GS9 RNU6-1154P-201ENST00000391001 104 ntBASIC3.11□□□□□ -1.91
USP39Q53GS9 Y_RNA.586-201ENST00000391146 98 ntBASIC3.11□□□□□ -1.91
USP39Q53GS9 RNU6-1197P-201ENST00000391183 107 ntBASIC3.11□□□□□ -1.91
USP39Q53GS9 ELOCP21-201ENST00000412558 336 ntBASIC3.11□□□□□ -1.91
USP39Q53GS9 AC112220.1-201ENST00000434628 355 ntBASIC3.11□□□□□ -1.91
USP39Q53GS9 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms