Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.02□□□□□ -2.09
PDLIM3Q53GG5 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.02□□□□□ -2.09
PDLIM3Q53GG5 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.02□□□□□ -2.09
PDLIM3Q53GG5 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.02□□□□□ -2.09
PDLIM3Q53GG5 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC2.02□□□□□ -2.09
PDLIM3Q53GG5 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 RNY3P11-201ENST00000364153 102 ntBASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 SNORD32B-201ENST00000364460 84 ntBASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 Y_RNA.813-201ENST00000364639 102 ntBASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 RNU6-26P-201ENST00000383985 107 ntBASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 SNORA41-201ENST00000384675 132 ntBASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 MIR95-201ENST00000385072 81 ntBASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 Y_RNA.579-201ENST00000390939 94 ntBASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 WARS2P1-201ENST00000429678 537 ntBASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 RNU7-14P-201ENST00000459331 62 ntBASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 RNU7-169P-201ENST00000459456 61 ntBASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 AC018868.1-201ENST00000491307 315 ntBASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 AC105758.1-201ENST00000506038 399 ntBASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 RNU6-307P-201ENST00000516743 106 ntBASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 RNU6-1098P-201ENST00000516772 96 ntBASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 RNA5SP137-201ENST00000516833 135 ntBASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 Y_RNA.706-201ENST00000516933 99 ntBASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 AC022616.8-201ENST00000533569 253 ntBASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 AC016256.1-201ENST00000547971 354 ntBASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 MIR5006-201ENST00000583027 110 ntBASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 AC005899.2-201ENST00000584353 90 ntBASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 AC080078.3-201ENST00000605407 463 ntBASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 AC133104.2-201ENST00000615272 193 ntBASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 AC137590.2-201ENST00000619709 240 ntBASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 SDR42E1P4-201ENST00000620894 481 ntBASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 U4.3-201ENST00000621047 82 ntBASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 AC016717.2-201ENST00000609089 5141 ntBASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.01□□□□□ -2.09
PDLIM3Q53GG5 Y_RNA.106-201ENST00000363189 100 ntBASIC2□□□□□ -2.09
PDLIM3Q53GG5 Y_RNA.319-201ENST00000365138 92 ntBASIC2□□□□□ -2.09
PDLIM3Q53GG5 MIR153-2-201ENST00000385225 87 ntBASIC2□□□□□ -2.09
PDLIM3Q53GG5 SNORA75.6-201ENST00000391318 127 ntBASIC2□□□□□ -2.09
PDLIM3Q53GG5 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2□□□□□ -2.09
PDLIM3Q53GG5 AC004386.2-201ENST00000441858 148 ntBASIC2□□□□□ -2.09
PDLIM3Q53GG5 MTCO3P8-201ENST00000453691 755 ntBASIC2□□□□□ -2.09
PDLIM3Q53GG5 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2□□□□□ -2.09
PDLIM3Q53GG5 RPL17P19-201ENST00000489069 552 ntBASIC2□□□□□ -2.09
PDLIM3Q53GG5 RNU6-470P-201ENST00000515954 104 ntBASIC2□□□□□ -2.09
PDLIM3Q53GG5 Y_RNA.661-201ENST00000516003 99 ntBASIC2□□□□□ -2.09
PDLIM3Q53GG5 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2□□□□□ -2.09
PDLIM3Q53GG5 RNU2-44P-201ENST00000516795 194 ntBASIC2□□□□□ -2.09
PDLIM3Q53GG5 DEFB131C-201ENST00000528817 165 ntBASIC2□□□□□ -2.09
PDLIM3Q53GG5 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC2□□□□□ -2.09
PDLIM3Q53GG5 AC004584.2-201ENST00000570407 410 ntBASIC2□□□□□ -2.09
PDLIM3Q53GG5 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2□□□□□ -2.09
PDLIM3Q53GG5 MIR5695-201ENST00000579717 85 ntBASIC2□□□□□ -2.09
PDLIM3Q53GG5 C8orf59P2-201ENST00000603441 271 ntBASIC2□□□□□ -2.09
PDLIM3Q53GG5 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2□□□□□ -2.09
PDLIM3Q53GG5 MESTIT1_1.1-201ENST00000618871 140 ntBASIC2□□□□□ -2.09
PDLIM3Q53GG5 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2□□□□□ -2.09
PDLIM3Q53GG5 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 MIRLET7G-201ENST00000362280 84 ntBASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 Y_RNA.61-201ENST00000362835 102 ntBASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 RNU6-727P-201ENST00000363592 107 ntBASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 U8.10-201ENST00000384260 133 ntBASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 AL356379.1-201ENST00000414105 126 ntBASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 CBX3P6-201ENST00000430257 527 ntBASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 AL035666.1-201ENST00000446195 348 ntBASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 RNA5SP233-201ENST00000459153 113 ntBASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 AP000870.1-201ENST00000472927 406 ntBASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 ATP5EP1-201ENST00000510257 156 ntBASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 RNU1-117P-201ENST00000517041 158 ntBASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 MIR4287-201ENST00000579398 78 ntBASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 AC100812.1-201ENST00000607622 580 ntBASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 AC067747.1-201ENST00000608026 250 ntBASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 AL162373.1-201ENST00000620433 407 ntBASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 AC098657.3-201ENST00000620434 263 ntBASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 MTND5P16-201ENST00000460269 1703 ntBASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 AC008555.8-201ENST00000623602 2168 ntBASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.99□□□□□ -2.09
PDLIM3Q53GG5 RNU6-874P-201ENST00000362390 105 ntBASIC1.98□□□□□ -2.09
PDLIM3Q53GG5 RNU6-797P-201ENST00000363101 109 ntBASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 543.6 ms