Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 SNORD98-201ENST00000636377 67 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 MTND5P32-201ENST00000560711 1802 ntBASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 RNU1-76P-201ENST00000362903 159 ntBASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 Y_RNA.352-201ENST00000365439 102 ntBASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 RNU6-877P-201ENST00000383868 107 ntBASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 AC114878.1-201ENST00000441166 358 ntBASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 AC104136.1-201ENST00000512969 394 ntBASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 AC106038.2-201ENST00000520706 568 ntBASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 AF235103.2-201ENST00000525753 346 ntBASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 AC093023.1-201ENST00000547375 507 ntBASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 AL353765.1-201ENST00000605514 183 ntBASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 AC004832.4-201ENST00000608952 331 ntBASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 AL359547.2-201ENST00000615810 418 ntBASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 MESTIT1_1.1-201ENST00000618871 140 ntBASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 AL359697.1-201ENST00000624879 587 ntBASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 RNU6-199P-201ENST00000362954 107 ntBASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 RNU6-353P-201ENST00000364266 108 ntBASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 TIMM9P2-201ENST00000419324 266 ntBASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 AC006366.1-201ENST00000422002 759 ntBASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 AL356583.2-201ENST00000426536 280 ntBASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 STAG3L5P-204ENST00000443759 179 ntBASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 SNORD126-201ENST00000459475 77 ntBASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 AC016911.1-201ENST00000613297 452 ntBASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 AC007014.2-201ENST00000615581 479 ntBASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 MIR548AZ-201ENST00000616567 95 ntBASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 uc_338.36-201ENST00000622331 158 ntBASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 AC132825.7-201ENST00000638744 335 ntBASIC-0.09□□□□□ -2.42
CHD9Q3L8U1 MIR16-2-201ENST00000362117 81 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 U3.4-201ENST00000363352 213 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 U6.112-201ENST00000384129 70 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 MIR520F-201ENST00000384824 87 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 RNA5SP467-201ENST00000391274 118 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 RNU4-63P-201ENST00000411313 118 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 USP9YP21-201ENST00000420603 432 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 MTCO2P34-201ENST00000421994 607 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 MTCO2P1-201ENST00000424648 477 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 UBE2D3P3-201ENST00000426992 425 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 ZNF736P5Y-201ENST00000451173 805 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 RPS3AP17-201ENST00000472594 777 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 RNU6-1041P-201ENST00000516254 102 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 AP002001.1-203ENST00000534002 267 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 SUB1P2-201ENST00000556401 297 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 ZNF519P3-201ENST00000557158 1032 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 AL138889.2-201ENST00000603883 242 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 AL451064.1-201ENST00000607718 471 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 AC104458.1-201ENST00000608243 463 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 MIR8084-201ENST00000614105 89 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 Y_RNA.117-201ENST00000363294 101 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 Y_RNA.403-201ENST00000383977 101 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 AC243964.1-201ENST00000441814 261 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 RNU6-953P-201ENST00000459154 107 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 RPL39P36-201ENST00000490784 156 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 AC109445.1-201ENST00000512356 383 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 AP001328.1-201ENST00000528550 176 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 AL391840.1-201ENST00000571144 367 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 CTHRC1P1-201ENST00000605383 469 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 MIR1322-201ENST00000638013 71 ntBASIC-0.1□□□□□ -2.43
CHD9Q3L8U1 Y_RNA.311-201ENST00000365068 96 ntBASIC-0.11□□□□□ -2.43
CHD9Q3L8U1 RNU6-1031P-201ENST00000384773 107 ntBASIC-0.11□□□□□ -2.43
CHD9Q3L8U1 MIR520G-201ENST00000385064 90 ntBASIC-0.11□□□□□ -2.43
CHD9Q3L8U1 MIR520H-201ENST00000385126 88 ntBASIC-0.11□□□□□ -2.43
CHD9Q3L8U1 MIR1283-1-201ENST00000408494 87 ntBASIC-0.11□□□□□ -2.43
CHD9Q3L8U1 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC-0.11□□□□□ -2.43
CHD9Q3L8U1 AC002429.1-201ENST00000437672 148 ntBASIC-0.11□□□□□ -2.43
CHD9Q3L8U1 AC079382.1-201ENST00000493346 557 ntBASIC-0.11□□□□□ -2.43
CHD9Q3L8U1 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC-0.11□□□□□ -2.43
CHD9Q3L8U1 RNU6-377P-201ENST00000515965 102 ntBASIC-0.11□□□□□ -2.43
CHD9Q3L8U1 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC-0.11□□□□□ -2.43
CHD9Q3L8U1 AC104408.1-201ENST00000605241 170 ntBASIC-0.11□□□□□ -2.43
CHD9Q3L8U1 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC-0.11□□□□□ -2.43
CHD9Q3L8U1 AC026585.1-201ENST00000619582 524 ntBASIC-0.11□□□□□ -2.43
CHD9Q3L8U1 AL157770.1-201ENST00000623049 439 ntBASIC-0.11□□□□□ -2.43
CHD9Q3L8U1 Y_RNA.265-201ENST00000364677 108 ntBASIC-0.11□□□□□ -2.43
CHD9Q3L8U1 Y_RNA.423-201ENST00000384057 113 ntBASIC-0.11□□□□□ -2.43
CHD9Q3L8U1 Y_RNA.536-201ENST00000384621 113 ntBASIC-0.11□□□□□ -2.43
CHD9Q3L8U1 SNORD75.1-201ENST00000408373 60 ntBASIC-0.11□□□□□ -2.43
CHD9Q3L8U1 MTND3P17-201ENST00000416968 344 ntBASIC-0.11□□□□□ -2.43
CHD9Q3L8U1 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC-0.11□□□□□ -2.43
CHD9Q3L8U1 MTCO3P43-201ENST00000440974 771 ntBASIC-0.11□□□□□ -2.43
CHD9Q3L8U1 AC093019.1-201ENST00000443135 252 ntBASIC-0.11□□□□□ -2.43
CHD9Q3L8U1 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC-0.11□□□□□ -2.43
CHD9Q3L8U1 SNORD54-201ENST00000459159 67 ntBASIC-0.11□□□□□ -2.43
CHD9Q3L8U1 SUMO2P5-201ENST00000506790 245 ntBASIC-0.11□□□□□ -2.43
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms