Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 HMGB1P29-201ENST00000505659 499 ntBASIC1.24□□□□□ -2.21
CCNA1P78396 SNORA14.1-201ENST00000516113 141 ntBASIC1.24□□□□□ -2.21
CCNA1P78396 SNORA40.12-201ENST00000516329 111 ntBASIC1.24□□□□□ -2.21
CCNA1P78396 RNU7-40P-201ENST00000516397 64 ntBASIC1.24□□□□□ -2.21
CCNA1P78396 RNU6-1098P-201ENST00000516772 96 ntBASIC1.24□□□□□ -2.21
CCNA1P78396 AC090821.2-201ENST00000523552 176 ntBASIC1.24□□□□□ -2.21
CCNA1P78396 AC104576.1-201ENST00000524225 88 ntBASIC1.24□□□□□ -2.21
CCNA1P78396 AC021231.3-201ENST00000558497 370 ntBASIC1.24□□□□□ -2.21
CCNA1P78396 CYP4A27P-201ENST00000567218 190 ntBASIC1.24□□□□□ -2.21
CCNA1P78396 MIR4424-201ENST00000585257 86 ntBASIC1.24□□□□□ -2.21
CCNA1P78396 AL050343.2-201ENST00000607338 280 ntBASIC1.24□□□□□ -2.21
CCNA1P78396 DLEU2_1.1-201ENST00000612089 120 ntBASIC1.24□□□□□ -2.21
CCNA1P78396 DLEU2_1.2-201ENST00000614667 120 ntBASIC1.24□□□□□ -2.21
CCNA1P78396 AC099654.5-201ENST00000636479 350 ntBASIC1.24□□□□□ -2.21
CCNA1P78396 Y_RNA.77-201ENST00000362962 107 ntBASIC1.23□□□□□ -2.21
CCNA1P78396 AL663109.1-201ENST00000411498 844 ntBASIC1.23□□□□□ -2.21
CCNA1P78396 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.23□□□□□ -2.21
CCNA1P78396 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC1.23□□□□□ -2.21
CCNA1P78396 AC099677.2-201ENST00000436385 175 ntBASIC1.23□□□□□ -2.21
CCNA1P78396 PGBD4P5-201ENST00000445958 426 ntBASIC1.23□□□□□ -2.21
CCNA1P78396 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC1.23□□□□□ -2.21
CCNA1P78396 snoU13.27-201ENST00000459278 104 ntBASIC1.23□□□□□ -2.21
CCNA1P78396 MTCO3P38-201ENST00000468910 766 ntBASIC1.23□□□□□ -2.21
CCNA1P78396 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC1.23□□□□□ -2.21
CCNA1P78396 AC008628.2-201ENST00000502605 298 ntBASIC1.23□□□□□ -2.21
CCNA1P78396 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.23□□□□□ -2.21
CCNA1P78396 AC025423.5-201ENST00000550230 219 ntBASIC1.23□□□□□ -2.21
CCNA1P78396 NTS-203ENST00000551529 801 ntTSL 3 BASIC1.23□□□□□ -2.21
CCNA1P78396 AL118558.2-201ENST00000556294 238 ntBASIC1.23□□□□□ -2.21
CCNA1P78396 SNORA59B-202ENST00000578183 701 ntBASIC1.23□□□□□ -2.21
CCNA1P78396 AC092747.3-201ENST00000603769 301 ntBASIC1.23□□□□□ -2.21
CCNA1P78396 AC016727.2-201ENST00000603988 621 ntBASIC1.23□□□□□ -2.21
CCNA1P78396 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.23□□□□□ -2.21
CCNA1P78396 AC009509.4-201ENST00000619202 509 ntBASIC1.23□□□□□ -2.21
CCNA1P78396 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.23□□□□□ -2.21
CCNA1P78396 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.23□□□□□ -2.21
CCNA1P78396 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC1.23□□□□□ -2.21
CCNA1P78396 AC009541.1-201ENST00000438279 2662 ntBASIC1.22□□□□□ -2.21
CCNA1P78396 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.22□□□□□ -2.21
CCNA1P78396 RNU1-76P-201ENST00000362903 159 ntBASIC1.22□□□□□ -2.21
CCNA1P78396 MIR7-2-201ENST00000384970 110 ntBASIC1.22□□□□□ -2.21
CCNA1P78396 RNU6-1106P-201ENST00000390845 107 ntBASIC1.22□□□□□ -2.21
CCNA1P78396 CDK8P2-201ENST00000415020 547 ntBASIC1.22□□□□□ -2.21
CCNA1P78396 COX6CP10-201ENST00000416832 224 ntBASIC1.22□□□□□ -2.21
CCNA1P78396 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC1.22□□□□□ -2.21
CCNA1P78396 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC1.22□□□□□ -2.21
CCNA1P78396 MTCO2P3-201ENST00000442543 421 ntBASIC1.22□□□□□ -2.21
CCNA1P78396 TPTE2P5-203ENST00000458118 728 ntBASIC1.22□□□□□ -2.21
CCNA1P78396 AC091133.4-201ENST00000511142 308 ntBASIC1.22□□□□□ -2.21
CCNA1P78396 RNU6-189P-201ENST00000516120 101 ntBASIC1.22□□□□□ -2.21
CCNA1P78396 RNA5SP480-201ENST00000516840 109 ntBASIC1.22□□□□□ -2.21
CCNA1P78396 RNU6-612P-201ENST00000516909 102 ntBASIC1.22□□□□□ -2.21
CCNA1P78396 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.22□□□□□ -2.21
CCNA1P78396 CENPUP1-201ENST00000526649 1202 ntBASIC1.22□□□□□ -2.21
CCNA1P78396 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.22□□□□□ -2.21
CCNA1P78396 MIR3611-201ENST00000584484 83 ntBASIC1.22□□□□□ -2.21
CCNA1P78396 MIR3976-201ENST00000606807 139 ntBASIC1.22□□□□□ -2.21
CCNA1P78396 AC009994.1-201ENST00000606889 253 ntBASIC1.22□□□□□ -2.21
CCNA1P78396 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.22□□□□□ -2.21
CCNA1P78396 AC139792.3-201ENST00000623525 224 ntBASIC1.22□□□□□ -2.21
CCNA1P78396 AL359697.1-201ENST00000624879 587 ntBASIC1.22□□□□□ -2.21
CCNA1P78396 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.22□□□□□ -2.21
CCNA1P78396 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.21□□□□□ -2.22
CCNA1P78396 RNU4-20P-201ENST00000365601 151 ntBASIC1.21□□□□□ -2.22
CCNA1P78396 Y_RNA.409-201ENST00000383990 98 ntBASIC1.21□□□□□ -2.22
CCNA1P78396 SNORA29-201ENST00000384183 140 ntBASIC1.21□□□□□ -2.22
CCNA1P78396 MIR548B-201ENST00000385247 97 ntBASIC1.21□□□□□ -2.22
CCNA1P78396 AC012306.1-201ENST00000423267 114 ntBASIC1.21□□□□□ -2.22
CCNA1P78396 MTND3P9-201ENST00000429526 346 ntBASIC1.21□□□□□ -2.22
CCNA1P78396 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC1.21□□□□□ -2.22
CCNA1P78396 AC007547.1-201ENST00000462177 490 ntBASIC1.21□□□□□ -2.22
CCNA1P78396 AC010531.2-201ENST00000465012 153 ntBASIC1.21□□□□□ -2.22
CCNA1P78396 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.21□□□□□ -2.22
CCNA1P78396 RNA5SP401-201ENST00000515920 127 ntBASIC1.21□□□□□ -2.22
CCNA1P78396 Y_RNA.670-201ENST00000516255 105 ntBASIC1.21□□□□□ -2.22
CCNA1P78396 RNU6-323P-201ENST00000521915 107 ntBASIC1.21□□□□□ -2.22
CCNA1P78396 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC1.21□□□□□ -2.22
CCNA1P78396 DEFB131C-201ENST00000528817 165 ntBASIC1.21□□□□□ -2.22
CCNA1P78396 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC1.21□□□□□ -2.22
CCNA1P78396 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC1.21□□□□□ -2.22
CCNA1P78396 AP003465.2-201ENST00000602571 373 ntBASIC1.21□□□□□ -2.22
CCNA1P78396 AC064807.4-201ENST00000607201 407 ntBASIC1.21□□□□□ -2.22
CCNA1P78396 AC064836.2-201ENST00000609491 462 ntBASIC1.21□□□□□ -2.22
CCNA1P78396 AL121757.2-201ENST00000611223 313 ntBASIC1.21□□□□□ -2.22
CCNA1P78396 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.21□□□□□ -2.22
CCNA1P78396 AC095038.3-201ENST00000634439 195 ntBASIC1.21□□□□□ -2.22
CCNA1P78396 AC091812.1-201ENST00000432235 1948 ntBASIC1.21□□□□□ -2.22
CCNA1P78396 SNORA72.2-201ENST00000365028 127 ntBASIC1.2□□□□□ -2.22
CCNA1P78396 RNU4-66P-201ENST00000365199 138 ntBASIC1.2□□□□□ -2.22
CCNA1P78396 Y_RNA.378-201ENST00000365652 113 ntBASIC1.2□□□□□ -2.22
CCNA1P78396 Y_RNA.582-201ENST00000391023 95 ntBASIC1.2□□□□□ -2.22
CCNA1P78396 DEFB108C-201ENST00000400154 252 ntBASIC1.2□□□□□ -2.22
CCNA1P78396 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC1.2□□□□□ -2.22
CCNA1P78396 TIMM9P3-201ENST00000428659 274 ntBASIC1.2□□□□□ -2.22
CCNA1P78396 USP9YP28-201ENST00000435142 589 ntBASIC1.2□□□□□ -2.22
CCNA1P78396 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC1.2□□□□□ -2.22
CCNA1P78396 RPS29P27-201ENST00000463711 170 ntBASIC1.2□□□□□ -2.22
CCNA1P78396 RPS26P45-201ENST00000471748 340 ntBASIC1.2□□□□□ -2.22
CCNA1P78396 RN7SKP179-201ENST00000516126 217 ntBASIC1.2□□□□□ -2.22
CCNA1P78396 RNU2-34P-201ENST00000516534 121 ntBASIC1.2□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 169.5 ms