Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC004223.2-201ENST00000590309 544 ntBASIC1.03□□□□□ -2.24
BRCA1P38398 Z98751.3-201ENST00000604447 521 ntBASIC1.03□□□□□ -2.24
BRCA1P38398 AC002044.1-201ENST00000606707 158 ntBASIC1.03□□□□□ -2.24
BRCA1P38398 AL360219.1-201ENST00000610230 366 ntBASIC1.03□□□□□ -2.24
BRCA1P38398 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.25
BRCA1P38398 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC1.03□□□□□ -2.25
BRCA1P38398 SNORA70.7-201ENST00000384159 133 ntBASIC1.03□□□□□ -2.25
BRCA1P38398 SNORA16.2-201ENST00000390991 127 ntBASIC1.03□□□□□ -2.25
BRCA1P38398 RNA5SP467-201ENST00000391274 118 ntBASIC1.03□□□□□ -2.25
BRCA1P38398 SNORA26.8-201ENST00000391306 124 ntBASIC1.03□□□□□ -2.25
BRCA1P38398 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.03□□□□□ -2.25
BRCA1P38398 RNU6ATAC27P-201ENST00000408289 119 ntBASIC1.03□□□□□ -2.25
BRCA1P38398 RNA5SP193-201ENST00000410353 107 ntBASIC1.03□□□□□ -2.25
BRCA1P38398 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC1.03□□□□□ -2.25
BRCA1P38398 EIF1P1-201ENST00000421436 341 ntBASIC1.03□□□□□ -2.25
BRCA1P38398 AC073910.1-201ENST00000445047 438 ntBASIC1.03□□□□□ -2.25
BRCA1P38398 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.03□□□□□ -2.25
BRCA1P38398 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC1.03□□□□□ -2.25
BRCA1P38398 RPS29P27-201ENST00000463711 170 ntBASIC1.03□□□□□ -2.25
BRCA1P38398 RPS23P4-201ENST00000487908 423 ntBASIC1.03□□□□□ -2.25
BRCA1P38398 AL163195.1-201ENST00000496941 348 ntBASIC1.03□□□□□ -2.25
BRCA1P38398 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.03□□□□□ -2.25
BRCA1P38398 RNU2-69P-201ENST00000516061 100 ntBASIC1.03□□□□□ -2.25
BRCA1P38398 AL157687.1-201ENST00000554853 619 ntBASIC1.03□□□□□ -2.25
BRCA1P38398 MTCO3P23-201ENST00000561363 289 ntBASIC1.03□□□□□ -2.25
BRCA1P38398 MIR4760-201ENST00000585040 80 ntBASIC1.03□□□□□ -2.25
BRCA1P38398 AP003465.2-201ENST00000602571 373 ntBASIC1.03□□□□□ -2.25
BRCA1P38398 AC120349.3-201ENST00000624377 529 ntBASIC1.03□□□□□ -2.25
BRCA1P38398 RNU6-266P-201ENST00000364225 107 ntBASIC1.02□□□□□ -2.25
BRCA1P38398 RNU6-418P-201ENST00000384035 107 ntBASIC1.02□□□□□ -2.25
BRCA1P38398 RNU6-1026P-201ENST00000384465 108 ntBASIC1.02□□□□□ -2.25
BRCA1P38398 Y_RNA.504-201ENST00000384481 104 ntBASIC1.02□□□□□ -2.25
BRCA1P38398 RNU6-1054P-201ENST00000411293 104 ntBASIC1.02□□□□□ -2.25
BRCA1P38398 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.02□□□□□ -2.25
BRCA1P38398 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC1.02□□□□□ -2.25
BRCA1P38398 RNA5SP481-201ENST00000516814 122 ntBASIC1.02□□□□□ -2.25
BRCA1P38398 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC1.02□□□□□ -2.25
BRCA1P38398 AL137161.1-201ENST00000532231 390 ntBASIC1.02□□□□□ -2.25
BRCA1P38398 AC090115.3-201ENST00000553218 849 ntBASIC1.02□□□□□ -2.25
BRCA1P38398 MIR4711-201ENST00000578274 70 ntBASIC1.02□□□□□ -2.25
BRCA1P38398 Y_RNA.68-201ENST00000362881 102 ntBASIC1.01□□□□□ -2.25
BRCA1P38398 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.01□□□□□ -2.25
BRCA1P38398 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC1.01□□□□□ -2.25
BRCA1P38398 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC1.01□□□□□ -2.25
BRCA1P38398 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.01□□□□□ -2.25
BRCA1P38398 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC1.01□□□□□ -2.25
BRCA1P38398 OR2AQ1P-201ENST00000451972 200 ntBASIC1.01□□□□□ -2.25
BRCA1P38398 TPTE2P5-203ENST00000458118 728 ntBASIC1.01□□□□□ -2.25
BRCA1P38398 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.01□□□□□ -2.25
BRCA1P38398 HIF1AP1-201ENST00000553642 175 ntBASIC1.01□□□□□ -2.25
BRCA1P38398 AL442163.3-201ENST00000554110 156 ntBASIC1.01□□□□□ -2.25
BRCA1P38398 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.01□□□□□ -2.25
BRCA1P38398 RNU6-85P-201ENST00000605989 107 ntBASIC1.01□□□□□ -2.25
BRCA1P38398 MIR8087-201ENST00000612745 78 ntBASIC1.01□□□□□ -2.25
BRCA1P38398 AC009033.1-201ENST00000624279 431 ntBASIC1.01□□□□□ -2.25
BRCA1P38398 RNU6-245P-201ENST00000384020 107 ntBASIC1.01□□□□□ -2.25
BRCA1P38398 Y_RNA.481-201ENST00000384373 102 ntBASIC1.01□□□□□ -2.25
BRCA1P38398 RNU6-417P-201ENST00000384712 107 ntBASIC1.01□□□□□ -2.25
BRCA1P38398 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC1.01□□□□□ -2.25
BRCA1P38398 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC1.01□□□□□ -2.25
BRCA1P38398 MTCO2P34-201ENST00000421994 607 ntBASIC1.01□□□□□ -2.25
BRCA1P38398 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC1.01□□□□□ -2.25
BRCA1P38398 HSPE1P21-201ENST00000438283 308 ntBASIC1.01□□□□□ -2.25
BRCA1P38398 AL031274.1-201ENST00000450334 232 ntBASIC1.01□□□□□ -2.25
BRCA1P38398 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC1.01□□□□□ -2.25
BRCA1P38398 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC1.01□□□□□ -2.25
BRCA1P38398 SNORD116-28-201ENST00000516123 91 ntBASIC1.01□□□□□ -2.25
BRCA1P38398 SUMO2P16-201ENST00000519475 264 ntBASIC1.01□□□□□ -2.25
BRCA1P38398 AC026371.1-201ENST00000551867 419 ntBASIC1.01□□□□□ -2.25
BRCA1P38398 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.01□□□□□ -2.25
BRCA1P38398 AGGF1P4-201ENST00000568249 801 ntBASIC1.01□□□□□ -2.25
BRCA1P38398 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.01□□□□□ -2.25
BRCA1P38398 HULC.1-201ENST00000612720 240 ntBASIC1.01□□□□□ -2.25
BRCA1P38398 MIR2909-201ENST00000617113 69 ntBASIC1.01□□□□□ -2.25
BRCA1P38398 Z69908.1-201ENST00000622603 247 ntBASIC1.01□□□□□ -2.25
BRCA1P38398 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.01□□□□□ -2.25
BRCA1P38398 MIR338-201ENST00000636369 67 ntBASIC1.01□□□□□ -2.25
BRCA1P38398 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1□□□□□ -2.25
BRCA1P38398 snoU2-30.2-201ENST00000362805 70 ntBASIC1□□□□□ -2.25
BRCA1P38398 RNU6-1322P-201ENST00000364309 107 ntBASIC1□□□□□ -2.25
BRCA1P38398 RNU6-933P-201ENST00000384424 107 ntBASIC1□□□□□ -2.25
BRCA1P38398 AL117339.3-201ENST00000418733 162 ntBASIC1□□□□□ -2.25
BRCA1P38398 MTND2P9-201ENST00000422293 931 ntBASIC1□□□□□ -2.25
BRCA1P38398 RPL31P35-201ENST00000431058 377 ntBASIC1□□□□□ -2.25
BRCA1P38398 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC1□□□□□ -2.25
BRCA1P38398 MTND1P26-201ENST00000440488 538 ntBASIC1□□□□□ -2.25
BRCA1P38398 PGBD4P5-201ENST00000445958 426 ntBASIC1□□□□□ -2.25
BRCA1P38398 MTND3P16-201ENST00000452205 344 ntBASIC1□□□□□ -2.25
BRCA1P38398 RPS26P45-201ENST00000471748 340 ntBASIC1□□□□□ -2.25
BRCA1P38398 AC091435.1-201ENST00000505442 584 ntBASIC1□□□□□ -2.25
BRCA1P38398 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1□□□□□ -2.25
BRCA1P38398 MIR4753-201ENST00000585119 83 ntBASIC1□□□□□ -2.25
BRCA1P38398 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1□□□□□ -2.25
BRCA1P38398 SRP54-214ENST00000630962 162 ntTSL 5 BASIC1□□□□□ -2.25
BRCA1P38398 RNU6-227P-201ENST00000362865 103 ntBASIC0.99□□□□□ -2.25
BRCA1P38398 RNU6-996P-201ENST00000365438 107 ntBASIC0.99□□□□□ -2.25
BRCA1P38398 SNORA29-201ENST00000384183 140 ntBASIC0.99□□□□□ -2.25
BRCA1P38398 RNU6-296P-201ENST00000384608 107 ntBASIC0.99□□□□□ -2.25
BRCA1P38398 MIR320B2-201ENST00000408479 138 ntBASIC0.99□□□□□ -2.25
BRCA1P38398 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC0.99□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 111.2 ms