Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC-0.25□□□□□ -2.45
COL6A3P12111 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC-0.26□□□□□ -2.45
COL6A3P12111 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC-0.26□□□□□ -2.45
COL6A3P12111 SNORA8.2-201ENST00000384372 139 ntBASIC-0.26□□□□□ -2.45
COL6A3P12111 RNU6-925P-201ENST00000384629 104 ntBASIC-0.26□□□□□ -2.45
COL6A3P12111 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC-0.26□□□□□ -2.45
COL6A3P12111 AC027644.1-201ENST00000419595 298 ntBASIC-0.26□□□□□ -2.45
COL6A3P12111 PSMA6P3-201ENST00000428242 164 ntBASIC-0.26□□□□□ -2.45
COL6A3P12111 CECR9-201ENST00000453421 199 ntBASIC-0.26□□□□□ -2.45
COL6A3P12111 MTND1P9-201ENST00000453775 944 ntBASIC-0.26□□□□□ -2.45
COL6A3P12111 RPL39P38-201ENST00000467018 153 ntBASIC-0.26□□□□□ -2.45
COL6A3P12111 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC-0.26□□□□□ -2.45
COL6A3P12111 AC026782.1-201ENST00000512952 449 ntBASIC-0.26□□□□□ -2.45
COL6A3P12111 RNU1-86P-201ENST00000516108 154 ntBASIC-0.26□□□□□ -2.45
COL6A3P12111 RNU6-927P-201ENST00000516199 100 ntBASIC-0.26□□□□□ -2.45
COL6A3P12111 RNU6-1110P-201ENST00000516462 101 ntBASIC-0.26□□□□□ -2.45
COL6A3P12111 RNU1-107P-201ENST00000516617 154 ntBASIC-0.26□□□□□ -2.45
COL6A3P12111 AC023157.2-201ENST00000540596 141 ntBASIC-0.26□□□□□ -2.45
COL6A3P12111 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC-0.26□□□□□ -2.45
COL6A3P12111 MIR4742-201ENST00000581069 85 ntBASIC-0.26□□□□□ -2.45
COL6A3P12111 AC100830.2-201ENST00000581636 240 ntBASIC-0.26□□□□□ -2.45
COL6A3P12111 AL355598.1-201ENST00000604169 202 ntBASIC-0.26□□□□□ -2.45
COL6A3P12111 AP005212.4-201ENST00000614206 710 ntBASIC-0.26□□□□□ -2.45
COL6A3P12111 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC-0.26□□□□□ -2.45
COL6A3P12111 AC106754.2-201ENST00000623006 233 ntBASIC-0.26□□□□□ -2.45
COL6A3P12111 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC-0.26□□□□□ -2.45
COL6A3P12111 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC-0.26□□□□□ -2.45
COL6A3P12111 RNU6-188P-201ENST00000364207 107 ntBASIC-0.26□□□□□ -2.45
COL6A3P12111 AC083799.1-201ENST00000366451 910 ntBASIC-0.26□□□□□ -2.45
COL6A3P12111 RNA5SP323-201ENST00000391094 133 ntBASIC-0.26□□□□□ -2.45
COL6A3P12111 MIR548H2-201ENST00000408874 88 ntBASIC-0.26□□□□□ -2.45
COL6A3P12111 RNU2-28P-201ENST00000410457 189 ntBASIC-0.26□□□□□ -2.45
COL6A3P12111 snoU13.27-201ENST00000459278 104 ntBASIC-0.26□□□□□ -2.45
COL6A3P12111 SUMO1P1-201ENST00000497904 306 ntBASIC-0.26□□□□□ -2.45
COL6A3P12111 AC117525.1-201ENST00000515228 503 ntBASIC-0.26□□□□□ -2.45
COL6A3P12111 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC-0.26□□□□□ -2.45
COL6A3P12111 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC-0.26□□□□□ -2.45
COL6A3P12111 AL391840.1-201ENST00000571144 367 ntBASIC-0.26□□□□□ -2.45
COL6A3P12111 MIR548AO-201ENST00000579992 96 ntBASIC-0.26□□□□□ -2.45
COL6A3P12111 AC011921.3-201ENST00000605540 361 ntBASIC-0.26□□□□□ -2.45
COL6A3P12111 RNU6-369P-201ENST00000362515 102 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 Y_RNA.370-201ENST00000365589 108 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 SNORD116-20-201ENST00000384529 92 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 SNORA26-201ENST00000391286 122 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 TRIM60P5Y-201ENST00000413946 574 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 AL592310.1-201ENST00000414330 671 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC-0.27□□□□□ -2.45
COL6A3P12111 AC073910.1-201ENST00000445047 438 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 AC091885.1-201ENST00000506658 268 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 RNU6-706P-201ENST00000517229 104 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 RNU2-60P-201ENST00000517290 128 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC-0.27□□□□□ -2.45
COL6A3P12111 AL929325.1-201ENST00000603096 117 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 AC011451.2-201ENST00000604303 598 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC-0.27□□□□□ -2.45
COL6A3P12111 AL513423.1-201ENST00000621695 132 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 AC104820.1-201ENST00000624183 307 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 Y_RNA.10-201ENST00000362371 110 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 RNU6-512P-201ENST00000364438 103 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 MIR660-201ENST00000385235 97 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 EIF4E2P1-201ENST00000393781 255 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 RNU6-177P-201ENST00000411257 104 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 BTF3L4P1-201ENST00000413813 468 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 AC006366.1-201ENST00000422002 759 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 MTCO3P1-205ENST00000422088 832 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC-0.27□□□□□ -2.45
COL6A3P12111 MTCYBP10-201ENST00000424905 650 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 SRRM1P2-201ENST00000464531 1192 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 AC114755.3-201ENST00000481111 251 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC-0.27□□□□□ -2.45
COL6A3P12111 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 AP002001.1-203ENST00000534002 267 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC-0.27□□□□□ -2.45
COL6A3P12111 MIR5591-201ENST00000578248 65 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 MTND1P15-201ENST00000579262 949 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 MIR4300-201ENST00000581016 96 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 AL161798.1-201ENST00000604630 131 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 AC024940.5-201ENST00000622889 474 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 RNU6-1210P-201ENST00000363775 107 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 RNY3P11-201ENST00000364153 102 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 SMIM11P1-201ENST00000369586 178 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC-0.27□□□□□ -2.45
COL6A3P12111 HMGN2P26-201ENST00000463169 339 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 MTCYBP33-201ENST00000575007 1130 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC-0.27□□□□□ -2.45
COL6A3P12111 MIR4263-201ENST00000584745 83 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 AL136363.2-201ENST00000604173 851 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 AL390208.1-201ENST00000605885 644 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 AC006157.1-201ENST00000611750 366 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 AC063943.3-201ENST00000615562 356 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 AC093875.1-201ENST00000623688 504 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 AC092656.1-203ENST00000624134 423 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 AL356596.1-201ENST00000624230 379 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 AL391099.1-201ENST00000624635 187 ntBASIC-0.27□□□□□ -2.45
COL6A3P12111 RNU6-655P-201ENST00000362858 107 ntBASIC-0.28□□□□□ -2.45
COL6A3P12111 SNORD114-11-201ENST00000363738 75 ntBASIC-0.28□□□□□ -2.45
COL6A3P12111 Y_RNA.548-201ENST00000384656 105 ntBASIC-0.28□□□□□ -2.45
COL6A3P12111 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC-0.28□□□□□ -2.45
COL6A3P12111 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC-0.28□□□□□ -2.45
COL6A3P12111 MTND1P21-201ENST00000412991 285 ntBASIC-0.28□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms