Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RNU6-308P-201ENST00000390957 107 ntBASIC1.92□□□□□ -2.1
HOXD4P09016 CBX3P9-201ENST00000402326 552 ntBASIC1.92□□□□□ -2.1
HOXD4P09016 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC1.92□□□□□ -2.1
HOXD4P09016 MTCYBP6-201ENST00000441810 138 ntBASIC1.92□□□□□ -2.1
HOXD4P09016 AL137792.2-201ENST00000443484 235 ntBASIC1.92□□□□□ -2.1
HOXD4P09016 AL353752.1-201ENST00000454946 260 ntBASIC1.92□□□□□ -2.1
HOXD4P09016 RPL30P10-201ENST00000488148 337 ntBASIC1.92□□□□□ -2.1
HOXD4P09016 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.92□□□□□ -2.1
HOXD4P09016 AC105758.1-201ENST00000506038 399 ntBASIC1.92□□□□□ -2.1
HOXD4P09016 RNU6-976P-201ENST00000516086 111 ntBASIC1.92□□□□□ -2.1
HOXD4P09016 Y_RNA.676-201ENST00000516393 96 ntBASIC1.92□□□□□ -2.1
HOXD4P09016 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.92□□□□□ -2.1
HOXD4P09016 AL590705.4-201ENST00000532209 134 ntBASIC1.92□□□□□ -2.1
HOXD4P09016 ANP32BP3-201ENST00000559213 706 ntBASIC1.92□□□□□ -2.1
HOXD4P09016 AC020661.2-201ENST00000560114 134 ntBASIC1.92□□□□□ -2.1
HOXD4P09016 SUB1P3-201ENST00000564581 315 ntBASIC1.92□□□□□ -2.1
HOXD4P09016 MIR3136-201ENST00000583498 78 ntBASIC1.92□□□□□ -2.1
HOXD4P09016 RPL30P11-203ENST00000598995 310 ntBASIC1.92□□□□□ -2.1
HOXD4P09016 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
HOXD4P09016 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.92□□□□□ -2.1
HOXD4P09016 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC1.92□□□□□ -2.1
HOXD4P09016 RNU6-874P-201ENST00000362390 105 ntBASIC1.91□□□□□ -2.1
HOXD4P09016 SNORA3A-201ENST00000364113 130 ntBASIC1.91□□□□□ -2.1
HOXD4P09016 Y_RNA.405-201ENST00000383979 100 ntBASIC1.91□□□□□ -2.1
HOXD4P09016 RNU6-1227P-201ENST00000383981 107 ntBASIC1.91□□□□□ -2.1
HOXD4P09016 Y_RNA.451-201ENST00000384200 100 ntBASIC1.91□□□□□ -2.1
HOXD4P09016 Y_RNA.524-201ENST00000384564 100 ntBASIC1.91□□□□□ -2.1
HOXD4P09016 RNU6-1011P-201ENST00000384668 107 ntBASIC1.91□□□□□ -2.1
HOXD4P09016 Y_RNA.561-201ENST00000384694 100 ntBASIC1.91□□□□□ -2.1
HOXD4P09016 MIR487A-201ENST00000385009 80 ntBASIC1.91□□□□□ -2.1
HOXD4P09016 MIR95-201ENST00000385072 81 ntBASIC1.91□□□□□ -2.1
HOXD4P09016 SNORA12.2-201ENST00000391040 156 ntBASIC1.91□□□□□ -2.1
HOXD4P09016 SNORA26.9-201ENST00000391322 122 ntBASIC1.91□□□□□ -2.1
HOXD4P09016 AC019129.1-201ENST00000403786 261 ntBASIC1.91□□□□□ -2.1
HOXD4P09016 MIR548P-201ENST00000408336 84 ntBASIC1.91□□□□□ -2.1
HOXD4P09016 AC012306.1-201ENST00000423267 114 ntBASIC1.91□□□□□ -2.1
HOXD4P09016 AL445646.1-201ENST00000431784 216 ntBASIC1.91□□□□□ -2.1
HOXD4P09016 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.91□□□□□ -2.1
HOXD4P09016 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.91□□□□□ -2.1
HOXD4P09016 RPL23AP7-203ENST00000449021 469 ntBASIC1.91□□□□□ -2.1
HOXD4P09016 RN7SKP210-201ENST00000459176 261 ntBASIC1.91□□□□□ -2.1
HOXD4P09016 TOMM22P6-201ENST00000465035 409 ntBASIC1.91□□□□□ -2.1
HOXD4P09016 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.91□□□□□ -2.1
HOXD4P09016 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.91□□□□□ -2.1
HOXD4P09016 AC004584.2-201ENST00000570407 410 ntBASIC1.91□□□□□ -2.1
HOXD4P09016 MIR3935-201ENST00000583472 104 ntBASIC1.91□□□□□ -2.1
HOXD4P09016 SNRPGP17-201ENST00000603780 214 ntBASIC1.91□□□□□ -2.1
HOXD4P09016 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.91□□□□□ -2.1
HOXD4P09016 MIR1244-1-201ENST00000612829 85 ntBASIC1.91□□□□□ -2.1
HOXD4P09016 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC1.91□□□□□ -2.1
HOXD4P09016 AC134503.1-201ENST00000633048 54 ntBASIC1.91□□□□□ -2.1
HOXD4P09016 MIR1244-3-201ENST00000635744 85 ntBASIC1.91□□□□□ -2.1
HOXD4P09016 MIR1244-2-201ENST00000636449 85 ntBASIC1.91□□□□□ -2.1
HOXD4P09016 MIR1244-4-202ENST00000636813 85 ntBASIC1.91□□□□□ -2.1
HOXD4P09016 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.91□□□□□ -2.1
HOXD4P09016 RNU4-15P-201ENST00000362613 141 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 Y_RNA.112-201ENST00000363250 102 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 Y_RNA.128-201ENST00000363391 112 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 Y_RNA.216-201ENST00000364205 93 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 RNU6-1032P-201ENST00000384100 107 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 U8.10-201ENST00000384260 133 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 RNU1-148P-201ENST00000384472 162 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 Y_RNA.577-201ENST00000384794 101 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 MIR32-201ENST00000384965 70 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 U8.13-201ENST00000390842 128 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 RNU6-700P-201ENST00000391043 107 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 MIR1302-11-201ENST00000408051 138 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 MIR1302-9-201ENST00000408365 138 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 MIR1302-10-201ENST00000408734 138 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 PMCHL1-202ENST00000423102 261 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 AC018865.2-201ENST00000423631 129 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 MTCYBP10-201ENST00000424905 650 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC1.9□□□□□ -2.11
HOXD4P09016 AC092423.1-201ENST00000430165 186 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC1.9□□□□□ -2.11
HOXD4P09016 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC1.9□□□□□ -2.11
HOXD4P09016 snoU13.30-201ENST00000458951 104 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 Y_RNA.631-201ENST00000459607 101 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 Y_RNA.661-201ENST00000516003 99 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 RNU6-295P-201ENST00000516901 104 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.9□□□□□ -2.11
HOXD4P09016 CBX3P7-201ENST00000532876 502 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 AC104581.2-201ENST00000572227 430 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 AL713866.2-201ENST00000603579 219 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 AC012493.3-201ENST00000604494 112 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 MIR1302-2-201ENST00000607096 138 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 AL355802.3-201ENST00000607571 545 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 AC012640.5-201ENST00000623897 319 ntBASIC1.9□□□□□ -2.11
HOXD4P09016 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.9□□□□□ -2.11
HOXD4P09016 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.89□□□□□ -2.11
HOXD4P09016 SNORD115-32-201ENST00000364079 82 ntBASIC1.89□□□□□ -2.11
HOXD4P09016 Y_RNA.252-201ENST00000364556 101 ntBASIC1.89□□□□□ -2.11
HOXD4P09016 RNU4-56P-201ENST00000364700 142 ntBASIC1.89□□□□□ -2.11
HOXD4P09016 AL023284.1-201ENST00000403956 276 ntBASIC1.89□□□□□ -2.11
HOXD4P09016 RNU6-1156P-201ENST00000410365 100 ntBASIC1.89□□□□□ -2.11
HOXD4P09016 AL356379.1-201ENST00000414105 126 ntBASIC1.89□□□□□ -2.11
HOXD4P09016 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.89□□□□□ -2.11
HOXD4P09016 AC005534.2-201ENST00000431047 433 ntBASIC1.89□□□□□ -2.11
HOXD4P09016 AL161788.1-201ENST00000441805 169 ntBASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 166.4 ms