Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 SNORA63D-201ENST00000364359 132 ntBASIC1.28□□□□□ -2.2
CLDN9O95484 SNORD1A-201ENST00000364968 72 ntBASIC1.28□□□□□ -2.2
CLDN9O95484 SNORA69-201ENST00000383895 132 ntBASIC1.28□□□□□ -2.2
CLDN9O95484 RNU6-331P-201ENST00000384724 107 ntBASIC1.28□□□□□ -2.2
CLDN9O95484 RNY3P9-201ENST00000384727 106 ntBASIC1.28□□□□□ -2.2
CLDN9O95484 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
CLDN9O95484 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.28□□□□□ -2.2
CLDN9O95484 MTCO2P16-201ENST00000436962 677 ntBASIC1.28□□□□□ -2.2
CLDN9O95484 AL359672.1-201ENST00000442302 409 ntBASIC1.28□□□□□ -2.2
CLDN9O95484 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.28□□□□□ -2.2
CLDN9O95484 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.28□□□□□ -2.2
CLDN9O95484 AC016717.1-201ENST00000448918 286 ntBASIC1.28□□□□□ -2.2
CLDN9O95484 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC1.28□□□□□ -2.2
CLDN9O95484 RNU6-261P-201ENST00000459506 102 ntBASIC1.28□□□□□ -2.2
CLDN9O95484 SRRM1P2-201ENST00000464531 1192 ntBASIC1.28□□□□□ -2.2
CLDN9O95484 AC083798.1-201ENST00000472671 131 ntBASIC1.28□□□□□ -2.2
CLDN9O95484 MTCYBP18-201ENST00000501056 747 ntBASIC1.28□□□□□ -2.2
CLDN9O95484 RNU2-34P-201ENST00000516534 121 ntBASIC1.28□□□□□ -2.2
CLDN9O95484 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC1.28□□□□□ -2.2
CLDN9O95484 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC1.28□□□□□ -2.2
CLDN9O95484 AC104383.1-201ENST00000530297 370 ntBASIC1.28□□□□□ -2.2
CLDN9O95484 AL161670.1-201ENST00000554348 137 ntBASIC1.28□□□□□ -2.2
CLDN9O95484 AL157687.1-201ENST00000554853 619 ntBASIC1.28□□□□□ -2.2
CLDN9O95484 AL160236.1-201ENST00000556317 195 ntBASIC1.28□□□□□ -2.2
CLDN9O95484 AP000907.4-201ENST00000604143 237 ntBASIC1.28□□□□□ -2.2
CLDN9O95484 AC092807.2-201ENST00000609367 243 ntBASIC1.28□□□□□ -2.2
CLDN9O95484 AC017083.3-201ENST00000609955 700 ntBASIC1.28□□□□□ -2.2
CLDN9O95484 AC009509.4-201ENST00000619202 509 ntBASIC1.28□□□□□ -2.2
CLDN9O95484 AL359697.1-201ENST00000624879 587 ntBASIC1.28□□□□□ -2.2
CLDN9O95484 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
CLDN9O95484 RNU6-342P-201ENST00000384521 104 ntBASIC1.27□□□□□ -2.21
CLDN9O95484 MIR521-1-201ENST00000384902 87 ntBASIC1.27□□□□□ -2.21
CLDN9O95484 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.27□□□□□ -2.21
CLDN9O95484 RNU6-325P-201ENST00000411132 105 ntBASIC1.27□□□□□ -2.21
CLDN9O95484 RPS26P42-201ENST00000413485 326 ntBASIC1.27□□□□□ -2.21
CLDN9O95484 CST2P1-201ENST00000425770 87 ntBASIC1.27□□□□□ -2.21
CLDN9O95484 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.27□□□□□ -2.21
CLDN9O95484 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.27□□□□□ -2.21
CLDN9O95484 AL135790.2-201ENST00000437701 267 ntBASIC1.27□□□□□ -2.21
CLDN9O95484 AC069257.2-201ENST00000441819 155 ntBASIC1.27□□□□□ -2.21
CLDN9O95484 RNU1-123P-201ENST00000458950 160 ntBASIC1.27□□□□□ -2.21
CLDN9O95484 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.27□□□□□ -2.21
CLDN9O95484 AC114982.1-201ENST00000469402 321 ntBASIC1.27□□□□□ -2.21
CLDN9O95484 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.27□□□□□ -2.21
CLDN9O95484 RNU6-902P-201ENST00000517212 91 ntBASIC1.27□□□□□ -2.21
CLDN9O95484 AP003033.1-201ENST00000527244 415 ntBASIC1.27□□□□□ -2.21
CLDN9O95484 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
CLDN9O95484 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.27□□□□□ -2.21
CLDN9O95484 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.27□□□□□ -2.21
CLDN9O95484 AL353149.1-201ENST00000610667 244 ntBASIC1.27□□□□□ -2.21
CLDN9O95484 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.27□□□□□ -2.21
CLDN9O95484 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.27□□□□□ -2.21
CLDN9O95484 MTND5P35-201ENST00000557537 1720 ntBASIC1.26□□□□□ -2.21
CLDN9O95484 RNU6-1322P-201ENST00000364309 107 ntBASIC1.26□□□□□ -2.21
CLDN9O95484 RNU6-214P-201ENST00000384130 107 ntBASIC1.26□□□□□ -2.21
CLDN9O95484 MIR150-201ENST00000385048 84 ntBASIC1.26□□□□□ -2.21
CLDN9O95484 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.26□□□□□ -2.21
CLDN9O95484 AF228730.1-201ENST00000397972 663 ntBASIC1.26□□□□□ -2.21
CLDN9O95484 DEFB108C-201ENST00000400154 252 ntBASIC1.26□□□□□ -2.21
CLDN9O95484 MRPL35P1-201ENST00000404272 572 ntBASIC1.26□□□□□ -2.21
CLDN9O95484 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.26□□□□□ -2.21
CLDN9O95484 RPS27P16-201ENST00000425758 201 ntBASIC1.26□□□□□ -2.21
CLDN9O95484 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC1.26□□□□□ -2.21
CLDN9O95484 MTCO3P8-201ENST00000453691 755 ntBASIC1.26□□□□□ -2.21
CLDN9O95484 snoU13.27-201ENST00000459278 104 ntBASIC1.26□□□□□ -2.21
CLDN9O95484 RNU6-1208P-201ENST00000459588 107 ntBASIC1.26□□□□□ -2.21
CLDN9O95484 AC079140.2-201ENST00000506193 142 ntBASIC1.26□□□□□ -2.21
CLDN9O95484 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.26□□□□□ -2.21
CLDN9O95484 RNA5SP102-201ENST00000516865 106 ntBASIC1.26□□□□□ -2.21
CLDN9O95484 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC1.26□□□□□ -2.21
CLDN9O95484 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC1.26□□□□□ -2.21
CLDN9O95484 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC1.26□□□□□ -2.21
CLDN9O95484 RRN3P3-201ENST00000549207 578 ntBASIC1.26□□□□□ -2.21
CLDN9O95484 AC068338.1-201ENST00000565567 176 ntBASIC1.26□□□□□ -2.21
CLDN9O95484 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC1.26□□□□□ -2.21
CLDN9O95484 MIR3937-201ENST00000580135 106 ntBASIC1.26□□□□□ -2.21
CLDN9O95484 FGF7P1-201ENST00000582820 288 ntBASIC1.26□□□□□ -2.21
CLDN9O95484 MIR3611-201ENST00000584484 83 ntBASIC1.26□□□□□ -2.21
CLDN9O95484 RN7SKP299-201ENST00000606679 301 ntBASIC1.26□□□□□ -2.21
CLDN9O95484 AL121890.5-201ENST00000620848 304 ntBASIC1.26□□□□□ -2.21
CLDN9O95484 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC1.26□□□□□ -2.21
CLDN9O95484 MIR338-201ENST00000636369 67 ntBASIC1.26□□□□□ -2.21
CLDN9O95484 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.25□□□□□ -2.21
CLDN9O95484 Y_RNA.295-201ENST00000364918 102 ntBASIC1.25□□□□□ -2.21
CLDN9O95484 RNU6-933P-201ENST00000384424 107 ntBASIC1.25□□□□□ -2.21
CLDN9O95484 RNU6-1235P-201ENST00000384559 107 ntBASIC1.25□□□□□ -2.21
CLDN9O95484 AC004866.1-201ENST00000411748 78 ntBASIC1.25□□□□□ -2.21
CLDN9O95484 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.25□□□□□ -2.21
CLDN9O95484 AC073910.1-201ENST00000445047 438 ntBASIC1.25□□□□□ -2.21
CLDN9O95484 AC009237.7-201ENST00000447357 229 ntBASIC1.25□□□□□ -2.21
CLDN9O95484 NFU1P2-201ENST00000448700 469 ntBASIC1.25□□□□□ -2.21
CLDN9O95484 OR2AQ1P-201ENST00000451972 200 ntBASIC1.25□□□□□ -2.21
CLDN9O95484 RPS29P23-201ENST00000458635 123 ntBASIC1.25□□□□□ -2.21
CLDN9O95484 RNU6-498P-201ENST00000459468 107 ntBASIC1.25□□□□□ -2.21
CLDN9O95484 AC099513.1-201ENST00000490423 301 ntBASIC1.25□□□□□ -2.21
CLDN9O95484 AF186996.7-201ENST00000492781 209 ntBASIC1.25□□□□□ -2.21
CLDN9O95484 RNU6-948P-201ENST00000516374 107 ntBASIC1.25□□□□□ -2.21
CLDN9O95484 RNU6-1332P-201ENST00000516666 104 ntBASIC1.25□□□□□ -2.21
CLDN9O95484 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.25□□□□□ -2.21
CLDN9O95484 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC1.25□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms