Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 MTND4P5-201ENST00000435821 1374 ntBASIC1.85□□□□□ -2.11
SIX3O95343 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.85□□□□□ -2.11
SIX3O95343 ZNF204P-201ENST00000416749 2397 ntBASIC1.85□□□□□ -2.11
SIX3O95343 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
SIX3O95343 Y_RNA.212-201ENST00000364177 102 ntBASIC1.85□□□□□ -2.11
SIX3O95343 SNORD116-11-201ENST00000383882 92 ntBASIC1.85□□□□□ -2.11
SIX3O95343 RNU6-541P-201ENST00000384709 110 ntBASIC1.85□□□□□ -2.11
SIX3O95343 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.85□□□□□ -2.11
SIX3O95343 RNU2-7P-201ENST00000410794 178 ntBASIC1.85□□□□□ -2.11
SIX3O95343 RPS26P42-201ENST00000413485 326 ntBASIC1.85□□□□□ -2.11
SIX3O95343 RPL21P111-201ENST00000418453 477 ntBASIC1.85□□□□□ -2.11
SIX3O95343 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC1.85□□□□□ -2.11
SIX3O95343 CYCSP49-201ENST00000420810 319 ntBASIC1.85□□□□□ -2.11
SIX3O95343 ATP5J2P3-201ENST00000451550 258 ntBASIC1.85□□□□□ -2.11
SIX3O95343 RPL23AP75-201ENST00000491601 451 ntBASIC1.85□□□□□ -2.11
SIX3O95343 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC1.85□□□□□ -2.11
SIX3O95343 RNU6-1314P-201ENST00000517139 104 ntBASIC1.85□□□□□ -2.11
SIX3O95343 RNU1-54P-201ENST00000517181 120 ntBASIC1.85□□□□□ -2.11
SIX3O95343 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC1.85□□□□□ -2.11
SIX3O95343 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.85□□□□□ -2.11
SIX3O95343 AC139792.2-201ENST00000624218 587 ntBASIC1.85□□□□□ -2.11
SIX3O95343 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
SIX3O95343 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.84□□□□□ -2.11
SIX3O95343 RNU6-418P-201ENST00000384035 107 ntBASIC1.84□□□□□ -2.11
SIX3O95343 RNU6-306P-201ENST00000384617 107 ntBASIC1.84□□□□□ -2.11
SIX3O95343 MIR32-201ENST00000384965 70 ntBASIC1.84□□□□□ -2.11
SIX3O95343 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
SIX3O95343 MIR1283-1-201ENST00000408494 87 ntBASIC1.84□□□□□ -2.11
SIX3O95343 MIR548F1-201ENST00000408667 84 ntBASIC1.84□□□□□ -2.11
SIX3O95343 MIR1276-201ENST00000408707 83 ntBASIC1.84□□□□□ -2.11
SIX3O95343 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.84□□□□□ -2.11
SIX3O95343 AL513185.2-201ENST00000425543 193 ntBASIC1.84□□□□□ -2.11
SIX3O95343 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.84□□□□□ -2.11
SIX3O95343 MTCO3P8-201ENST00000453691 755 ntBASIC1.84□□□□□ -2.11
SIX3O95343 MTND1P11-201ENST00000456661 876 ntBASIC1.84□□□□□ -2.11
SIX3O95343 RN7SL274P-201ENST00000492268 272 ntBASIC1.84□□□□□ -2.11
SIX3O95343 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC1.84□□□□□ -2.11
SIX3O95343 MIR6845-201ENST00000613182 61 ntBASIC1.84□□□□□ -2.11
SIX3O95343 MIR6504-201ENST00000613520 61 ntBASIC1.84□□□□□ -2.11
SIX3O95343 MIR3688-2-201ENST00000636963 87 ntBASIC1.84□□□□□ -2.11
SIX3O95343 AC073869.6-201ENST00000640656 341 ntBASIC1.84□□□□□ -2.11
SIX3O95343 MTND5P9-201ENST00000503854 1755 ntBASIC1.83□□□□□ -2.12
SIX3O95343 RNU6-1305P-201ENST00000364353 104 ntBASIC1.83□□□□□ -2.12
SIX3O95343 RNU4-9P-201ENST00000364951 139 ntBASIC1.83□□□□□ -2.12
SIX3O95343 BTF3P4-201ENST00000418852 495 ntBASIC1.83□□□□□ -2.12
SIX3O95343 AL139396.1-201ENST00000421137 167 ntBASIC1.83□□□□□ -2.12
SIX3O95343 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.83□□□□□ -2.12
SIX3O95343 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
SIX3O95343 RNU7-66P-201ENST00000459469 62 ntBASIC1.83□□□□□ -2.12
SIX3O95343 HMGB3P17-201ENST00000504195 649 ntBASIC1.83□□□□□ -2.12
SIX3O95343 SNORA44.1-201ENST00000517031 108 ntBASIC1.83□□□□□ -2.12
SIX3O95343 RNU1-117P-201ENST00000517041 158 ntBASIC1.83□□□□□ -2.12
SIX3O95343 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.83□□□□□ -2.12
SIX3O95343 RRN3P3-201ENST00000549207 578 ntBASIC1.83□□□□□ -2.12
SIX3O95343 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.83□□□□□ -2.12
SIX3O95343 MIR3942-201ENST00000585264 109 ntBASIC1.83□□□□□ -2.12
SIX3O95343 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.83□□□□□ -2.12
SIX3O95343 CENPCP1-201ENST00000533085 2578 ntBASIC1.82□□□□□ -2.12
SIX3O95343 EBAG9P1-201ENST00000418955 543 ntBASIC1.82□□□□□ -2.12
SIX3O95343 AL357134.1-201ENST00000445848 426 ntBASIC1.82□□□□□ -2.12
SIX3O95343 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1.82□□□□□ -2.12
SIX3O95343 AC009237.7-201ENST00000447357 229 ntBASIC1.82□□□□□ -2.12
SIX3O95343 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.82□□□□□ -2.12
SIX3O95343 AC010531.2-201ENST00000465012 153 ntBASIC1.82□□□□□ -2.12
SIX3O95343 HMGN1P13-201ENST00000505795 138 ntBASIC1.82□□□□□ -2.12
SIX3O95343 RNU6-1041P-201ENST00000516254 102 ntBASIC1.82□□□□□ -2.12
SIX3O95343 RNU6-1198P-201ENST00000516904 67 ntBASIC1.82□□□□□ -2.12
SIX3O95343 DEFB131C-201ENST00000528817 165 ntBASIC1.82□□□□□ -2.12
SIX3O95343 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.82□□□□□ -2.12
SIX3O95343 AC098657.3-201ENST00000620434 263 ntBASIC1.82□□□□□ -2.12
SIX3O95343 SCARNA4-201ENST00000629045 128 ntBASIC1.82□□□□□ -2.12
SIX3O95343 ZNF355P-201ENST00000427301 3216 ntBASIC1.82□□□□□ -2.12
SIX3O95343 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.81□□□□□ -2.12
SIX3O95343 SNORA16.1-201ENST00000364597 132 ntBASIC1.81□□□□□ -2.12
SIX3O95343 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.81□□□□□ -2.12
SIX3O95343 UBE2V1P8-201ENST00000437166 265 ntBASIC1.81□□□□□ -2.12
SIX3O95343 AC003989.2-201ENST00000440224 169 ntBASIC1.81□□□□□ -2.12
SIX3O95343 NFU1P2-201ENST00000448700 469 ntBASIC1.81□□□□□ -2.12
SIX3O95343 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.81□□□□□ -2.12
SIX3O95343 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC1.81□□□□□ -2.12
SIX3O95343 RNU6-948P-201ENST00000516374 107 ntBASIC1.81□□□□□ -2.12
SIX3O95343 RNA5SP61-201ENST00000516453 100 ntBASIC1.81□□□□□ -2.12
SIX3O95343 RNA5SP54-201ENST00000516951 92 ntBASIC1.81□□□□□ -2.12
SIX3O95343 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.81□□□□□ -2.12
SIX3O95343 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.81□□□□□ -2.12
SIX3O95343 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.81□□□□□ -2.12
SIX3O95343 SNORA59B-202ENST00000578183 701 ntBASIC1.81□□□□□ -2.12
SIX3O95343 AC068790.6-201ENST00000602558 258 ntBASIC1.81□□□□□ -2.12
SIX3O95343 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.81□□□□□ -2.12
SIX3O95343 AC069114.2-201ENST00000604699 304 ntBASIC1.81□□□□□ -2.12
SIX3O95343 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
SIX3O95343 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.8□□□□□ -2.12
SIX3O95343 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.8□□□□□ -2.12
SIX3O95343 SNORD50.1-201ENST00000362987 71 ntBASIC1.8□□□□□ -2.12
SIX3O95343 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC1.8□□□□□ -2.12
SIX3O95343 MIR1277-201ENST00000408536 78 ntBASIC1.8□□□□□ -2.12
SIX3O95343 AL358453.1-201ENST00000422522 250 ntBASIC1.8□□□□□ -2.12
SIX3O95343 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC1.8□□□□□ -2.12
SIX3O95343 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.8□□□□□ -2.12
SIX3O95343 MTATP6P13-201ENST00000438531 667 ntBASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms