Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC0.81□□□□□ -2.28
SHOX2O60902 HMGN1P10-201ENST00000474557 553 ntBASIC0.81□□□□□ -2.28
SHOX2O60902 HMGN1P12-201ENST00000499125 195 ntBASIC0.81□□□□□ -2.28
SHOX2O60902 AC010486.2-201ENST00000505572 483 ntBASIC0.81□□□□□ -2.28
SHOX2O60902 RNU6-948P-201ENST00000516374 107 ntBASIC0.81□□□□□ -2.28
SHOX2O60902 AC024995.1-201ENST00000523014 93 ntBASIC0.81□□□□□ -2.28
SHOX2O60902 APOOP3-201ENST00000536787 586 ntBASIC0.81□□□□□ -2.28
SHOX2O60902 MTCO3P23-201ENST00000561363 289 ntBASIC0.81□□□□□ -2.28
SHOX2O60902 AC026470.2-201ENST00000561492 181 ntBASIC0.81□□□□□ -2.28
SHOX2O60902 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC0.81□□□□□ -2.28
SHOX2O60902 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC0.81□□□□□ -2.28
SHOX2O60902 AC012557.2-201ENST00000605919 418 ntBASIC0.81□□□□□ -2.28
SHOX2O60902 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC0.81□□□□□ -2.28
SHOX2O60902 SNORA43.4-201ENST00000629559 138 ntBASIC0.81□□□□□ -2.28
SHOX2O60902 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC0.8□□□□□ -2.28
SHOX2O60902 RNU6-266P-201ENST00000364225 107 ntBASIC0.8□□□□□ -2.28
SHOX2O60902 RNU4-28P-201ENST00000364739 141 ntBASIC0.8□□□□□ -2.28
SHOX2O60902 RNU6-1093P-201ENST00000391194 107 ntBASIC0.8□□□□□ -2.28
SHOX2O60902 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.8□□□□□ -2.28
SHOX2O60902 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC0.8□□□□□ -2.28
SHOX2O60902 CDK8P2-201ENST00000415020 547 ntBASIC0.8□□□□□ -2.28
SHOX2O60902 C1DP4-201ENST00000455429 424 ntBASIC0.8□□□□□ -2.28
SHOX2O60902 RPL39P38-201ENST00000467018 153 ntBASIC0.8□□□□□ -2.28
SHOX2O60902 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC0.8□□□□□ -2.28
SHOX2O60902 AC091435.1-201ENST00000505442 584 ntBASIC0.8□□□□□ -2.28
SHOX2O60902 AC091874.1-201ENST00000511402 339 ntBASIC0.8□□□□□ -2.28
SHOX2O60902 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC0.8□□□□□ -2.28
SHOX2O60902 AL022161.1-201ENST00000604390 213 ntBASIC0.8□□□□□ -2.28
SHOX2O60902 AC006566.1-201ENST00000608943 513 ntBASIC0.8□□□□□ -2.28
SHOX2O60902 AL021879.1-201ENST00000611756 288 ntBASIC0.8□□□□□ -2.28
SHOX2O60902 AC004223.4-201ENST00000612426 332 ntBASIC0.8□□□□□ -2.28
SHOX2O60902 FAM157A-202ENST00000615155 405 ntBASIC0.8□□□□□ -2.28
SHOX2O60902 MTND4P4-201ENST00000439033 1366 ntBASIC0.8□□□□□ -2.28
SHOX2O60902 SNORA9.1-201ENST00000362412 131 ntBASIC0.79□□□□□ -2.28
SHOX2O60902 RNY4P34-201ENST00000364779 95 ntBASIC0.79□□□□□ -2.28
SHOX2O60902 RNU1-36P-201ENST00000365130 165 ntBASIC0.79□□□□□ -2.28
SHOX2O60902 RNU4-48P-201ENST00000365559 182 ntBASIC0.79□□□□□ -2.28
SHOX2O60902 SNORA36A-201ENST00000384221 132 ntBASIC0.79□□□□□ -2.28
SHOX2O60902 RNU6-1106P-201ENST00000390845 107 ntBASIC0.79□□□□□ -2.28
SHOX2O60902 SNORD70.1-201ENST00000391007 85 ntBASIC0.79□□□□□ -2.28
SHOX2O60902 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC0.79□□□□□ -2.28
SHOX2O60902 AC074290.1-201ENST00000448883 135 ntBASIC0.79□□□□□ -2.28
SHOX2O60902 AL133217.1-201ENST00000450980 425 ntBASIC0.79□□□□□ -2.28
SHOX2O60902 AC022364.2-201ENST00000457963 554 ntBASIC0.79□□□□□ -2.28
SHOX2O60902 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC0.79□□□□□ -2.28
SHOX2O60902 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.79□□□□□ -2.28
SHOX2O60902 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC0.79□□□□□ -2.28
SHOX2O60902 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC0.79□□□□□ -2.28
SHOX2O60902 MIR4703-201ENST00000577728 79 ntBASIC0.79□□□□□ -2.28
SHOX2O60902 AC002044.1-201ENST00000606707 158 ntBASIC0.79□□□□□ -2.28
SHOX2O60902 AC005562.2-201ENST00000618264 111 ntBASIC0.79□□□□□ -2.28
SHOX2O60902 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.79□□□□□ -2.28
SHOX2O60902 AC068647.2-201ENST00000637380 353 ntBASIC0.79□□□□□ -2.28
SHOX2O60902 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.78□□□□□ -2.28
SHOX2O60902 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
SHOX2O60902 RNY4P3-201ENST00000365254 95 ntBASIC0.78□□□□□ -2.28
SHOX2O60902 MIR19B1-201ENST00000384829 87 ntBASIC0.78□□□□□ -2.28
SHOX2O60902 MTND3P17-201ENST00000416968 344 ntBASIC0.78□□□□□ -2.28
SHOX2O60902 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.78□□□□□ -2.28
SHOX2O60902 SNORA70.22-201ENST00000517160 124 ntBASIC0.78□□□□□ -2.28
SHOX2O60902 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC0.78□□□□□ -2.28
SHOX2O60902 MIR2909-201ENST00000617113 69 ntBASIC0.78□□□□□ -2.28
SHOX2O60902 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC0.78□□□□□ -2.28
SHOX2O60902 RNU6-1214P-201ENST00000363650 109 ntBASIC0.77□□□□□ -2.29
SHOX2O60902 Y_RNA.399-201ENST00000383955 105 ntBASIC0.77□□□□□ -2.29
SHOX2O60902 RNU6-975P-201ENST00000384296 105 ntBASIC0.77□□□□□ -2.29
SHOX2O60902 Y_RNA.488-201ENST00000384403 102 ntBASIC0.77□□□□□ -2.29
SHOX2O60902 RNU6-1127P-201ENST00000384580 107 ntBASIC0.77□□□□□ -2.29
SHOX2O60902 MIR532-201ENST00000385025 91 ntBASIC0.77□□□□□ -2.29
SHOX2O60902 SNORA16.2-201ENST00000390991 127 ntBASIC0.77□□□□□ -2.29
SHOX2O60902 HMGN2P34-201ENST00000437647 269 ntBASIC0.77□□□□□ -2.29
SHOX2O60902 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC0.77□□□□□ -2.29
SHOX2O60902 RPS29P15-201ENST00000458329 171 ntBASIC0.77□□□□□ -2.29
SHOX2O60902 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC0.77□□□□□ -2.29
SHOX2O60902 SNORA31.4-201ENST00000516049 129 ntBASIC0.77□□□□□ -2.29
SHOX2O60902 SCARNA16.2-201ENST00000516520 172 ntBASIC0.77□□□□□ -2.29
SHOX2O60902 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC0.77□□□□□ -2.29
SHOX2O60902 MIR3973-201ENST00000579824 107 ntBASIC0.77□□□□□ -2.29
SHOX2O60902 MIR4714-201ENST00000580728 77 ntBASIC0.77□□□□□ -2.29
SHOX2O60902 AC009509.4-201ENST00000619202 509 ntBASIC0.77□□□□□ -2.29
SHOX2O60902 RNU6-30P-201ENST00000384561 107 ntBASIC0.76□□□□□ -2.29
SHOX2O60902 AL356776.1-201ENST00000406574 447 ntBASIC0.76□□□□□ -2.29
SHOX2O60902 MTND2P9-201ENST00000422293 931 ntBASIC0.76□□□□□ -2.29
SHOX2O60902 AC009961.2-201ENST00000435771 251 ntBASIC0.76□□□□□ -2.29
SHOX2O60902 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC0.76□□□□□ -2.29
SHOX2O60902 SCARNA1-201ENST00000517138 166 ntBASIC0.76□□□□□ -2.29
SHOX2O60902 RNU6-165P-201ENST00000517170 99 ntBASIC0.76□□□□□ -2.29
SHOX2O60902 DEFB131C-201ENST00000528817 165 ntBASIC0.76□□□□□ -2.29
SHOX2O60902 AL391840.1-201ENST00000571144 367 ntBASIC0.76□□□□□ -2.29
SHOX2O60902 MIR4742-201ENST00000581069 85 ntBASIC0.76□□□□□ -2.29
SHOX2O60902 AC092354.1-201ENST00000606057 376 ntBASIC0.76□□□□□ -2.29
SHOX2O60902 TCL6_2.1-201ENST00000615162 119 ntBASIC0.76□□□□□ -2.29
SHOX2O60902 MPP6-209ENST00000625307 126 ntTSL 5 BASIC0.76□□□□□ -2.29
SHOX2O60902 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC0.76□□□□□ -2.29
SHOX2O60902 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.75□□□□□ -2.29
SHOX2O60902 MIR1-2-201ENST00000384961 85 ntBASIC0.75□□□□□ -2.29
SHOX2O60902 RNU6-584P-201ENST00000410350 95 ntBASIC0.75□□□□□ -2.29
SHOX2O60902 RNA5SP25-201ENST00000410815 110 ntBASIC0.75□□□□□ -2.29
SHOX2O60902 RPS26P42-201ENST00000413485 326 ntBASIC0.75□□□□□ -2.29
SHOX2O60902 Z95118.1-201ENST00000421372 247 ntBASIC0.75□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms