Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 TCL6_2.1-201ENST00000615162 119 ntBASIC0.42□□□□□ -2.34
SDCBPO00560 RNU5B-2P-201ENST00000363036 113 ntBASIC0.41□□□□□ -2.34
SDCBPO00560 RNU6-1335P-201ENST00000365426 107 ntBASIC0.41□□□□□ -2.34
SDCBPO00560 SNORA67.2-201ENST00000384300 149 ntBASIC0.41□□□□□ -2.34
SDCBPO00560 MIR200A-201ENST00000384875 90 ntBASIC0.41□□□□□ -2.34
SDCBPO00560 SNORD73A-201ENST00000386062 65 ntBASIC0.41□□□□□ -2.34
SDCBPO00560 RNU6-440P-201ENST00000390882 105 ntBASIC0.41□□□□□ -2.34
SDCBPO00560 MIR942-201ENST00000401111 86 ntBASIC0.41□□□□□ -2.34
SDCBPO00560 Y_RNA.598-201ENST00000410480 95 ntBASIC0.41□□□□□ -2.34
SDCBPO00560 MTND3P17-201ENST00000416968 344 ntBASIC0.41□□□□□ -2.34
SDCBPO00560 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.41□□□□□ -2.34
SDCBPO00560 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC0.41□□□□□ -2.34
SDCBPO00560 AL035398.1-201ENST00000430869 322 ntBASIC0.41□□□□□ -2.34
SDCBPO00560 AC009961.2-201ENST00000435771 251 ntBASIC0.41□□□□□ -2.34
SDCBPO00560 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.41□□□□□ -2.34
SDCBPO00560 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC0.41□□□□□ -2.34
SDCBPO00560 RNU6-1146P-201ENST00000516282 102 ntBASIC0.41□□□□□ -2.34
SDCBPO00560 RNU6-917P-201ENST00000516294 104 ntBASIC0.41□□□□□ -2.34
SDCBPO00560 MIR4778-201ENST00000577635 80 ntBASIC0.41□□□□□ -2.34
SDCBPO00560 MIR5583-1-201ENST00000580941 59 ntBASIC0.41□□□□□ -2.34
SDCBPO00560 MIR151B-201ENST00000584249 96 ntBASIC0.41□□□□□ -2.34
SDCBPO00560 RNU6-85P-201ENST00000605989 107 ntBASIC0.41□□□□□ -2.34
SDCBPO00560 AC139792.3-201ENST00000623525 224 ntBASIC0.41□□□□□ -2.34
SDCBPO00560 SNORD3E-202ENST00000627253 216 ntBASIC0.41□□□□□ -2.34
SDCBPO00560 SEPT14P19-203ENST00000633205 211 ntBASIC0.41□□□□□ -2.34
SDCBPO00560 RNU6-1305P-201ENST00000364353 104 ntBASIC0.4□□□□□ -2.35
SDCBPO00560 RNU4-12P-201ENST00000365233 139 ntBASIC0.4□□□□□ -2.35
SDCBPO00560 MIR653-201ENST00000385279 96 ntBASIC0.4□□□□□ -2.35
SDCBPO00560 RPS3AP3-201ENST00000411933 242 ntBASIC0.4□□□□□ -2.35
SDCBPO00560 AL593851.1-201ENST00000426171 157 ntBASIC0.4□□□□□ -2.35
SDCBPO00560 AC245047.3-201ENST00000429428 127 ntBASIC0.4□□□□□ -2.35
SDCBPO00560 RPL31P35-201ENST00000431058 377 ntBASIC0.4□□□□□ -2.35
SDCBPO00560 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC0.4□□□□□ -2.35
SDCBPO00560 AC079781.2-201ENST00000446424 169 ntBASIC0.4□□□□□ -2.35
SDCBPO00560 AC009237.7-201ENST00000447357 229 ntBASIC0.4□□□□□ -2.35
SDCBPO00560 snoU13.25-201ENST00000458945 104 ntBASIC0.4□□□□□ -2.35
SDCBPO00560 RNU7-57P-201ENST00000459540 60 ntBASIC0.4□□□□□ -2.35
SDCBPO00560 SRRM1P2-201ENST00000464531 1192 ntBASIC0.4□□□□□ -2.35
SDCBPO00560 BET1P1-201ENST00000482276 359 ntBASIC0.4□□□□□ -2.35
SDCBPO00560 COX6CP6-201ENST00000490840 228 ntBASIC0.4□□□□□ -2.35
SDCBPO00560 RNU6-947P-201ENST00000516264 106 ntBASIC0.4□□□□□ -2.35
SDCBPO00560 AC025647.1-201ENST00000517879 253 ntBASIC0.4□□□□□ -2.35
SDCBPO00560 MRPS36P3-201ENST00000519284 130 ntBASIC0.4□□□□□ -2.35
SDCBPO00560 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC0.4□□□□□ -2.35
SDCBPO00560 AL391840.1-201ENST00000571144 367 ntBASIC0.4□□□□□ -2.35
SDCBPO00560 MTND1P8-201ENST00000571424 950 ntBASIC0.4□□□□□ -2.35
SDCBPO00560 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC0.4□□□□□ -2.35
SDCBPO00560 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC0.4□□□□□ -2.35
SDCBPO00560 AC068790.6-201ENST00000602558 258 ntBASIC0.4□□□□□ -2.35
SDCBPO00560 AC146944.4-201ENST00000602697 718 ntBASIC0.4□□□□□ -2.35
SDCBPO00560 Z84480.1-201ENST00000605131 311 ntBASIC0.4□□□□□ -2.35
SDCBPO00560 AL513423.1-201ENST00000621695 132 ntBASIC0.4□□□□□ -2.35
SDCBPO00560 RNA5SP347-201ENST00000362445 119 ntBASIC0.39□□□□□ -2.35
SDCBPO00560 SNORD18A-201ENST00000363753 72 ntBASIC0.39□□□□□ -2.35
SDCBPO00560 RNU4-76P-201ENST00000364509 141 ntBASIC0.39□□□□□ -2.35
SDCBPO00560 RNU6-108P-201ENST00000365558 107 ntBASIC0.39□□□□□ -2.35
SDCBPO00560 RNU6-950P-201ENST00000384651 107 ntBASIC0.39□□□□□ -2.35
SDCBPO00560 MIR487A-201ENST00000385009 80 ntBASIC0.39□□□□□ -2.35
SDCBPO00560 MIR586-201ENST00000385035 97 ntBASIC0.39□□□□□ -2.35
SDCBPO00560 MIR660-201ENST00000385235 97 ntBASIC0.39□□□□□ -2.35
SDCBPO00560 SNORA75.2-201ENST00000391138 150 ntBASIC0.39□□□□□ -2.35
SDCBPO00560 SNORA75.3-201ENST00000391231 150 ntBASIC0.39□□□□□ -2.35
SDCBPO00560 MIR1253-201ENST00000408273 105 ntBASIC0.39□□□□□ -2.35
SDCBPO00560 RN7SKP200-201ENST00000410564 320 ntBASIC0.39□□□□□ -2.35
SDCBPO00560 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC0.39□□□□□ -2.35
SDCBPO00560 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC0.39□□□□□ -2.35
SDCBPO00560 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC0.39□□□□□ -2.35
SDCBPO00560 RNU7-21P-201ENST00000459430 62 ntBASIC0.39□□□□□ -2.35
SDCBPO00560 RNU6-229P-201ENST00000516614 102 ntBASIC0.39□□□□□ -2.35
SDCBPO00560 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC0.39□□□□□ -2.35
SDCBPO00560 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC0.39□□□□□ -2.35
SDCBPO00560 AL353765.1-201ENST00000605514 183 ntBASIC0.39□□□□□ -2.35
SDCBPO00560 AL391834.2-201ENST00000609982 546 ntBASIC0.39□□□□□ -2.35
SDCBPO00560 AC104465.1-201ENST00000611365 139 ntBASIC0.39□□□□□ -2.35
SDCBPO00560 AP000720.1-201ENST00000625091 483 ntBASIC0.39□□□□□ -2.35
SDCBPO00560 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.38□□□□□ -2.35
SDCBPO00560 RNA5SP499-201ENST00000363982 119 ntBASIC0.38□□□□□ -2.35
SDCBPO00560 RNU6-282P-201ENST00000365357 103 ntBASIC0.38□□□□□ -2.35
SDCBPO00560 SNORA80D-201ENST00000384488 135 ntBASIC0.38□□□□□ -2.35
SDCBPO00560 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC0.38□□□□□ -2.35
SDCBPO00560 RNA5SP504-201ENST00000410676 117 ntBASIC0.38□□□□□ -2.35
SDCBPO00560 AC106883.1-201ENST00000418805 562 ntBASIC0.38□□□□□ -2.35
SDCBPO00560 AC114737.2-201ENST00000421583 173 ntBASIC0.38□□□□□ -2.35
SDCBPO00560 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC0.38□□□□□ -2.35
SDCBPO00560 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC0.38□□□□□ -2.35
SDCBPO00560 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC0.38□□□□□ -2.35
SDCBPO00560 RNU4-54P-201ENST00000516428 129 ntBASIC0.38□□□□□ -2.35
SDCBPO00560 RNU1-142P-201ENST00000516682 145 ntBASIC0.38□□□□□ -2.35
SDCBPO00560 RNU6-612P-201ENST00000516909 102 ntBASIC0.38□□□□□ -2.35
SDCBPO00560 MRPS36P4-201ENST00000534436 298 ntBASIC0.38□□□□□ -2.35
SDCBPO00560 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.38□□□□□ -2.35
SDCBPO00560 MIR5000-201ENST00000577717 103 ntBASIC0.38□□□□□ -2.35
SDCBPO00560 BNIP3P39-201ENST00000601077 554 ntBASIC0.38□□□□□ -2.35
SDCBPO00560 AP000907.4-201ENST00000604143 237 ntBASIC0.38□□□□□ -2.35
SDCBPO00560 RMST_3.1-201ENST00000611651 109 ntBASIC0.38□□□□□ -2.35
SDCBPO00560 AL359075.3-201ENST00000613288 217 ntBASIC0.38□□□□□ -2.35
SDCBPO00560 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.38□□□□□ -2.35
SDCBPO00560 AC106754.1-201ENST00000562632 1513 ntBASIC0.38□□□□□ -2.35
SDCBPO00560 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.37□□□□□ -2.35
SDCBPO00560 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC0.37□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 119.8 ms