Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
USP3Q9Y6I4 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
USP3Q9Y6I4 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.95□□□□□ -1.78
USP3Q9Y6I4 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.95□□□□□ -1.78
USP3Q9Y6I4 RNA5SP124-201ENST00000362739 110 ntBASIC3.95□□□□□ -1.78
USP3Q9Y6I4 SNORA20B-201ENST00000384220 132 ntBASIC3.95□□□□□ -1.78
USP3Q9Y6I4 MIR554-201ENST00000384874 96 ntBASIC3.95□□□□□ -1.78
USP3Q9Y6I4 MIR3074-201ENST00000384885 81 ntBASIC3.95□□□□□ -1.78
USP3Q9Y6I4 MIR1283-1-201ENST00000408494 87 ntBASIC3.95□□□□□ -1.78
USP3Q9Y6I4 RNU7-107P-201ENST00000459121 61 ntBASIC3.95□□□□□ -1.78
USP3Q9Y6I4 Y_RNA.692-201ENST00000516627 105 ntBASIC3.95□□□□□ -1.78
USP3Q9Y6I4 SNORA31.21-201ENST00000517180 77 ntBASIC3.95□□□□□ -1.78
USP3Q9Y6I4 RNU1-45P-201ENST00000517191 141 ntBASIC3.95□□□□□ -1.78
USP3Q9Y6I4 AC023632.4-201ENST00000517783 191 ntBASIC3.95□□□□□ -1.78
USP3Q9Y6I4 AC093331.1-201ENST00000521474 169 ntBASIC3.95□□□□□ -1.78
USP3Q9Y6I4 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.95□□□□□ -1.78
USP3Q9Y6I4 AC120024.3-201ENST00000603167 156 ntBASIC3.95□□□□□ -1.78
USP3Q9Y6I4 snoZ196.1-201ENST00000625269 89 ntBASIC3.95□□□□□ -1.78
USP3Q9Y6I4 AC012442.3-202ENST00000636742 206 ntBASIC3.95□□□□□ -1.78
USP3Q9Y6I4 MIR3914-2-201ENST00000637339 95 ntBASIC3.95□□□□□ -1.78
USP3Q9Y6I4 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
USP3Q9Y6I4 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
USP3Q9Y6I4 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.95□□□□□ -1.78
USP3Q9Y6I4 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
USP3Q9Y6I4 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
USP3Q9Y6I4 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
USP3Q9Y6I4 Y_RNA.43-201ENST00000362670 111 ntBASIC3.94□□□□□ -1.78
USP3Q9Y6I4 Y_RNA.124-201ENST00000363339 93 ntBASIC3.94□□□□□ -1.78
USP3Q9Y6I4 RNU6-1080P-201ENST00000383982 107 ntBASIC3.94□□□□□ -1.78
USP3Q9Y6I4 RNU6-429P-201ENST00000384582 108 ntBASIC3.94□□□□□ -1.78
USP3Q9Y6I4 SNORA12-201ENST00000391162 147 ntBASIC3.94□□□□□ -1.78
USP3Q9Y6I4 HMGN2P8-201ENST00000391458 268 ntBASIC3.94□□□□□ -1.78
USP3Q9Y6I4 AL355796.1-201ENST00000406706 323 ntBASIC3.94□□□□□ -1.78
USP3Q9Y6I4 Y_RNA.622-201ENST00000411091 108 ntBASIC3.94□□□□□ -1.78
USP3Q9Y6I4 AL158823.1-201ENST00000418441 478 ntBASIC3.94□□□□□ -1.78
USP3Q9Y6I4 AL358232.1-201ENST00000448030 501 ntBASIC3.94□□□□□ -1.78
USP3Q9Y6I4 AL133547.1-201ENST00000448546 220 ntBASIC3.94□□□□□ -1.78
USP3Q9Y6I4 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.94□□□□□ -1.78
USP3Q9Y6I4 SNRPGP8-201ENST00000454064 226 ntBASIC3.94□□□□□ -1.78
USP3Q9Y6I4 TRBV12-2-201ENST00000489763 344 ntBASIC3.94□□□□□ -1.78
USP3Q9Y6I4 SNORA67.7-201ENST00000516664 135 ntBASIC3.94□□□□□ -1.78
USP3Q9Y6I4 AC093732.2-201ENST00000607950 274 ntBASIC3.94□□□□□ -1.78
USP3Q9Y6I4 MIR486-1-201ENST00000612171 68 ntBASIC3.94□□□□□ -1.78
USP3Q9Y6I4 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.94□□□□□ -1.78
USP3Q9Y6I4 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC3.94□□□□□ -1.78
USP3Q9Y6I4 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.94□□□□□ -1.78
USP3Q9Y6I4 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
USP3Q9Y6I4 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
USP3Q9Y6I4 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
USP3Q9Y6I4 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
USP3Q9Y6I4 Y_RNA.120-201ENST00000363304 110 ntBASIC3.93□□□□□ -1.78
USP3Q9Y6I4 Y_RNA.432-201ENST00000384087 111 ntBASIC3.93□□□□□ -1.78
USP3Q9Y6I4 AL135786.1-201ENST00000415892 214 ntBASIC3.93□□□□□ -1.78
USP3Q9Y6I4 AC097463.2-201ENST00000421074 142 ntBASIC3.93□□□□□ -1.78
USP3Q9Y6I4 SNORA84-201ENST00000459229 133 ntBASIC3.93□□□□□ -1.78
USP3Q9Y6I4 RNU7-57P-201ENST00000459540 60 ntBASIC3.93□□□□□ -1.78
USP3Q9Y6I4 RNU6-221P-201ENST00000459541 99 ntBASIC3.93□□□□□ -1.78
USP3Q9Y6I4 RPL23AP54-201ENST00000495129 419 ntBASIC3.93□□□□□ -1.78
USP3Q9Y6I4 RNU6-1098P-201ENST00000516772 96 ntBASIC3.93□□□□□ -1.78
USP3Q9Y6I4 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.93□□□□□ -1.78
USP3Q9Y6I4 MIR3158-1-201ENST00000583596 81 ntBASIC3.93□□□□□ -1.78
USP3Q9Y6I4 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
USP3Q9Y6I4 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
USP3Q9Y6I4 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.93□□□□□ -1.78
USP3Q9Y6I4 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.92□□□□□ -1.78
USP3Q9Y6I4 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
USP3Q9Y6I4 RNA5SP322-201ENST00000363617 119 ntBASIC3.92□□□□□ -1.78
USP3Q9Y6I4 RNA5SP267-201ENST00000364893 126 ntBASIC3.92□□□□□ -1.78
USP3Q9Y6I4 RNA5SP424-201ENST00000390988 115 ntBASIC3.92□□□□□ -1.78
USP3Q9Y6I4 AL139095.1-201ENST00000404326 391 ntBASIC3.92□□□□□ -1.78
USP3Q9Y6I4 RNA5SP38-201ENST00000410750 119 ntBASIC3.92□□□□□ -1.78
USP3Q9Y6I4 EIF4EP4-201ENST00000424916 578 ntBASIC3.92□□□□□ -1.78
USP3Q9Y6I4 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC3.92□□□□□ -1.78
USP3Q9Y6I4 AC016925.1-201ENST00000458303 298 ntBASIC3.92□□□□□ -1.78
USP3Q9Y6I4 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
USP3Q9Y6I4 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC3.92□□□□□ -1.78
USP3Q9Y6I4 RNU1-95P-201ENST00000516357 160 ntBASIC3.92□□□□□ -1.78
USP3Q9Y6I4 RNU6-589P-201ENST00000516485 107 ntBASIC3.92□□□□□ -1.78
USP3Q9Y6I4 RNU6-126P-201ENST00000516685 103 ntBASIC3.92□□□□□ -1.78
USP3Q9Y6I4 RNU1-128P-201ENST00000516704 160 ntBASIC3.92□□□□□ -1.78
USP3Q9Y6I4 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.92□□□□□ -1.78
USP3Q9Y6I4 AL021707.8-201ENST00000609428 183 ntBASIC3.92□□□□□ -1.78
USP3Q9Y6I4 MIR6129-201ENST00000616087 109 ntBASIC3.92□□□□□ -1.78
USP3Q9Y6I4 CR392039.5-201ENST00000623201 510 ntBASIC3.92□□□□□ -1.78
USP3Q9Y6I4 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.92□□□□□ -1.78
USP3Q9Y6I4 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.92□□□□□ -1.78
USP3Q9Y6I4 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
USP3Q9Y6I4 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC3.92□□□□□ -1.78
USP3Q9Y6I4 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
USP3Q9Y6I4 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
USP3Q9Y6I4 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.91□□□□□ -1.78
USP3Q9Y6I4 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.91□□□□□ -1.78
USP3Q9Y6I4 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
USP3Q9Y6I4 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.91□□□□□ -1.78
USP3Q9Y6I4 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
USP3Q9Y6I4 SNORA63.4-201ENST00000362763 126 ntBASIC3.91□□□□□ -1.78
USP3Q9Y6I4 RNU4-41P-201ENST00000364426 143 ntBASIC3.91□□□□□ -1.78
USP3Q9Y6I4 RNU6-1082P-201ENST00000364574 107 ntBASIC3.91□□□□□ -1.78
USP3Q9Y6I4 SNORD116-13-201ENST00000384408 92 ntBASIC3.91□□□□□ -1.78
USP3Q9Y6I4 RNU1-89P-201ENST00000384592 164 ntBASIC3.91□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms