Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 AC009963.1-201ENST00000417265 157 ntBASIC2.9□□□□□ -1.95
PCDHA1Q9Y5I3 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.9□□□□□ -1.95
PCDHA1Q9Y5I3 AC073910.1-201ENST00000445047 438 ntBASIC2.9□□□□□ -1.95
PCDHA1Q9Y5I3 AC140059.1-201ENST00000489238 361 ntBASIC2.9□□□□□ -1.95
PCDHA1Q9Y5I3 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.9□□□□□ -1.95
PCDHA1Q9Y5I3 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.9□□□□□ -1.95
PCDHA1Q9Y5I3 AC034114.1-201ENST00000520293 285 ntBASIC2.9□□□□□ -1.95
PCDHA1Q9Y5I3 AC105245.1-201ENST00000581934 244 ntBASIC2.9□□□□□ -1.95
PCDHA1Q9Y5I3 MIR3199-1-201ENST00000582434 88 ntBASIC2.9□□□□□ -1.95
PCDHA1Q9Y5I3 AL390123.1-201ENST00000603216 237 ntBASIC2.9□□□□□ -1.95
PCDHA1Q9Y5I3 AL713866.2-201ENST00000603579 219 ntBASIC2.9□□□□□ -1.95
PCDHA1Q9Y5I3 SNRPGP20-201ENST00000604477 205 ntBASIC2.9□□□□□ -1.95
PCDHA1Q9Y5I3 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.9□□□□□ -1.95
PCDHA1Q9Y5I3 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.9□□□□□ -1.95
PCDHA1Q9Y5I3 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.9□□□□□ -1.95
PCDHA1Q9Y5I3 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC2.9□□□□□ -1.95
PCDHA1Q9Y5I3 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
PCDHA1Q9Y5I3 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
PCDHA1Q9Y5I3 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.89□□□□□ -1.95
PCDHA1Q9Y5I3 RNU6-708P-201ENST00000384217 107 ntBASIC2.89□□□□□ -1.95
PCDHA1Q9Y5I3 RNU6-318P-201ENST00000384283 103 ntBASIC2.89□□□□□ -1.95
PCDHA1Q9Y5I3 MIR518C-201ENST00000384822 101 ntBASIC2.89□□□□□ -1.95
PCDHA1Q9Y5I3 MIR218-1-201ENST00000384999 110 ntBASIC2.89□□□□□ -1.95
PCDHA1Q9Y5I3 RNA5SP508-201ENST00000411327 119 ntBASIC2.89□□□□□ -1.95
PCDHA1Q9Y5I3 FCF1P4-201ENST00000448326 183 ntBASIC2.89□□□□□ -1.95
PCDHA1Q9Y5I3 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.89□□□□□ -1.95
PCDHA1Q9Y5I3 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
PCDHA1Q9Y5I3 RNU6-56P-201ENST00000516986 93 ntBASIC2.89□□□□□ -1.95
PCDHA1Q9Y5I3 COX6CP5-201ENST00000527162 228 ntBASIC2.89□□□□□ -1.95
PCDHA1Q9Y5I3 HSPE1P20-201ENST00000538133 289 ntBASIC2.89□□□□□ -1.95
PCDHA1Q9Y5I3 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC2.89□□□□□ -1.95
PCDHA1Q9Y5I3 AC026470.2-201ENST00000561492 181 ntBASIC2.89□□□□□ -1.95
PCDHA1Q9Y5I3 UBL5P4-201ENST00000562584 236 ntBASIC2.89□□□□□ -1.95
PCDHA1Q9Y5I3 MIR3616-201ENST00000584070 92 ntBASIC2.89□□□□□ -1.95
PCDHA1Q9Y5I3 AC125232.2-201ENST00000592457 143 ntBASIC2.89□□□□□ -1.95
PCDHA1Q9Y5I3 AL121655.1-201ENST00000605811 308 ntBASIC2.89□□□□□ -1.95
PCDHA1Q9Y5I3 AC010205.1-201ENST00000616668 449 ntBASIC2.89□□□□□ -1.95
PCDHA1Q9Y5I3 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.89□□□□□ -1.95
PCDHA1Q9Y5I3 ZNF204P-201ENST00000416749 2397 ntBASIC2.88□□□□□ -1.95
PCDHA1Q9Y5I3 Y_RNA.152-201ENST00000363578 100 ntBASIC2.88□□□□□ -1.95
PCDHA1Q9Y5I3 RNU6-879P-201ENST00000364328 108 ntBASIC2.88□□□□□ -1.95
PCDHA1Q9Y5I3 SNORD32B-201ENST00000364460 84 ntBASIC2.88□□□□□ -1.95
PCDHA1Q9Y5I3 Y_RNA.276-201ENST00000364732 109 ntBASIC2.88□□□□□ -1.95
PCDHA1Q9Y5I3 RNU6-1145P-201ENST00000384246 107 ntBASIC2.88□□□□□ -1.95
PCDHA1Q9Y5I3 SNORA67.4-201ENST00000384688 142 ntBASIC2.88□□□□□ -1.95
PCDHA1Q9Y5I3 MIR329-1-201ENST00000385028 80 ntBASIC2.88□□□□□ -1.95
PCDHA1Q9Y5I3 MIR320B2-201ENST00000408479 138 ntBASIC2.88□□□□□ -1.95
PCDHA1Q9Y5I3 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC2.88□□□□□ -1.95
PCDHA1Q9Y5I3 SDAD1P3-201ENST00000427380 333 ntBASIC2.88□□□□□ -1.95
PCDHA1Q9Y5I3 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.88□□□□□ -1.95
PCDHA1Q9Y5I3 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.88□□□□□ -1.95
PCDHA1Q9Y5I3 MTND3P2-201ENST00000438452 342 ntBASIC2.88□□□□□ -1.95
PCDHA1Q9Y5I3 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.88□□□□□ -1.95
PCDHA1Q9Y5I3 RNU6-1012P-201ENST00000516606 109 ntBASIC2.88□□□□□ -1.95
PCDHA1Q9Y5I3 RN7SKP49-201ENST00000516675 260 ntBASIC2.88□□□□□ -1.95
PCDHA1Q9Y5I3 MIR5695-201ENST00000579717 85 ntBASIC2.88□□□□□ -1.95
PCDHA1Q9Y5I3 RPL17P51-201ENST00000605218 238 ntBASIC2.88□□□□□ -1.95
PCDHA1Q9Y5I3 PRR13P7-201ENST00000605538 430 ntBASIC2.88□□□□□ -1.95
PCDHA1Q9Y5I3 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.88□□□□□ -1.95
PCDHA1Q9Y5I3 RNU6-873P-201ENST00000363833 107 ntBASIC2.87□□□□□ -1.95
PCDHA1Q9Y5I3 RNA5SP344-201ENST00000411081 104 ntBASIC2.87□□□□□ -1.95
PCDHA1Q9Y5I3 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.87□□□□□ -1.95
PCDHA1Q9Y5I3 AC010655.3-201ENST00000478818 450 ntBASIC2.87□□□□□ -1.95
PCDHA1Q9Y5I3 AC010469.2-201ENST00000496412 480 ntBASIC2.87□□□□□ -1.95
PCDHA1Q9Y5I3 AC023141.11-201ENST00000508864 202 ntBASIC2.87□□□□□ -1.95
PCDHA1Q9Y5I3 AC109329.2-201ENST00000519658 482 ntBASIC2.87□□□□□ -1.95
PCDHA1Q9Y5I3 AC093023.1-201ENST00000547375 507 ntBASIC2.87□□□□□ -1.95
PCDHA1Q9Y5I3 CTSLP2-204ENST00000629029 392 ntBASIC2.87□□□□□ -1.95
PCDHA1Q9Y5I3 U6.92-201ENST00000636464 89 ntBASIC2.87□□□□□ -1.95
PCDHA1Q9Y5I3 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.87□□□□□ -1.95
PCDHA1Q9Y5I3 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.87□□□□□ -1.95
PCDHA1Q9Y5I3 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
PCDHA1Q9Y5I3 RNU1-62P-201ENST00000362599 164 ntBASIC2.86□□□□□ -1.95
PCDHA1Q9Y5I3 RNU6-461P-201ENST00000364195 107 ntBASIC2.86□□□□□ -1.95
PCDHA1Q9Y5I3 Y_RNA.458-201ENST00000384240 102 ntBASIC2.86□□□□□ -1.95
PCDHA1Q9Y5I3 SNORD78.2-201ENST00000391076 69 ntBASIC2.86□□□□□ -1.95
PCDHA1Q9Y5I3 AL513477.1-202ENST00000417061 214 ntBASIC2.86□□□□□ -1.95
PCDHA1Q9Y5I3 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.86□□□□□ -1.95
PCDHA1Q9Y5I3 DPH3P2-201ENST00000422618 250 ntBASIC2.86□□□□□ -1.95
PCDHA1Q9Y5I3 CBX3P6-201ENST00000430257 527 ntBASIC2.86□□□□□ -1.95
PCDHA1Q9Y5I3 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.86□□□□□ -1.95
PCDHA1Q9Y5I3 RNA5SP76-201ENST00000516277 87 ntBASIC2.86□□□□□ -1.95
PCDHA1Q9Y5I3 SNORA25.14-201ENST00000516481 132 ntBASIC2.86□□□□□ -1.95
PCDHA1Q9Y5I3 CYCSP23-201ENST00000519781 313 ntBASIC2.86□□□□□ -1.95
PCDHA1Q9Y5I3 AC131281.1-201ENST00000522984 164 ntBASIC2.86□□□□□ -1.95
PCDHA1Q9Y5I3 MIR5092-201ENST00000583139 88 ntBASIC2.86□□□□□ -1.95
PCDHA1Q9Y5I3 AC023043.3-201ENST00000593113 385 ntBASIC2.86□□□□□ -1.95
PCDHA1Q9Y5I3 AC013412.1-201ENST00000610687 192 ntBASIC2.86□□□□□ -1.95
PCDHA1Q9Y5I3 AC010999.1-201ENST00000611856 324 ntBASIC2.86□□□□□ -1.95
PCDHA1Q9Y5I3 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.86□□□□□ -1.95
PCDHA1Q9Y5I3 TCL6_2.1-201ENST00000615162 119 ntBASIC2.86□□□□□ -1.95
PCDHA1Q9Y5I3 AC008121.3-201ENST00000618726 433 ntBASIC2.86□□□□□ -1.95
PCDHA1Q9Y5I3 MIR5739-201ENST00000619803 80 ntBASIC2.86□□□□□ -1.95
PCDHA1Q9Y5I3 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
PCDHA1Q9Y5I3 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
PCDHA1Q9Y5I3 RNU6-1309P-201ENST00000363305 108 ntBASIC2.85□□□□□ -1.95
PCDHA1Q9Y5I3 RNA5SP456-201ENST00000364002 114 ntBASIC2.85□□□□□ -1.95
PCDHA1Q9Y5I3 RNU6-611P-201ENST00000384276 104 ntBASIC2.85□□□□□ -1.95
PCDHA1Q9Y5I3 Y_RNA.471-201ENST00000384312 102 ntBASIC2.85□□□□□ -1.95
PCDHA1Q9Y5I3 MIR95-201ENST00000385072 81 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 248.5 ms