Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 AC079598.5-201ENST00000547460 117 ntBASIC4.06□□□□□ -1.76
CCDC87Q9NVE4 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC4.06□□□□□ -1.76
CCDC87Q9NVE4 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC4.06□□□□□ -1.76
CCDC87Q9NVE4 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC87Q9NVE4 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC87Q9NVE4 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC87Q9NVE4 AC007256.1-201ENST00000392253 2765 ntBASIC4.05□□□□□ -1.76
CCDC87Q9NVE4 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC87Q9NVE4 RNU6-727P-201ENST00000363592 107 ntBASIC4.05□□□□□ -1.76
CCDC87Q9NVE4 Y_RNA.435-201ENST00000384095 112 ntBASIC4.05□□□□□ -1.76
CCDC87Q9NVE4 RNU6ATAC15P-201ENST00000408279 121 ntBASIC4.05□□□□□ -1.76
CCDC87Q9NVE4 RNU6-1199P-201ENST00000411249 104 ntBASIC4.05□□□□□ -1.76
CCDC87Q9NVE4 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC4.05□□□□□ -1.76
CCDC87Q9NVE4 AP001324.2-201ENST00000461163 319 ntBASIC4.05□□□□□ -1.76
CCDC87Q9NVE4 Y_RNA.662-201ENST00000516028 97 ntBASIC4.05□□□□□ -1.76
CCDC87Q9NVE4 RNU6-861P-201ENST00000516745 106 ntBASIC4.05□□□□□ -1.76
CCDC87Q9NVE4 GTF3AP2-201ENST00000557014 266 ntBASIC4.05□□□□□ -1.76
CCDC87Q9NVE4 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC4.05□□□□□ -1.76
CCDC87Q9NVE4 RPL17P51-201ENST00000605218 238 ntBASIC4.05□□□□□ -1.76
CCDC87Q9NVE4 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC87Q9NVE4 uc_338.25-201ENST00000613756 156 ntBASIC4.05□□□□□ -1.76
CCDC87Q9NVE4 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC4.05□□□□□ -1.76
CCDC87Q9NVE4 AC244205.2-202ENST00000635781 342 ntBASIC4.05□□□□□ -1.76
CCDC87Q9NVE4 U6.106-201ENST00000636360 105 ntBASIC4.05□□□□□ -1.76
CCDC87Q9NVE4 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC87Q9NVE4 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC87Q9NVE4 AC000403.1-201ENST00000613696 3585 ntBASIC4.04□□□□□ -1.76
CCDC87Q9NVE4 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC87Q9NVE4 Y_RNA.262-201ENST00000364641 102 ntBASIC4.04□□□□□ -1.76
CCDC87Q9NVE4 RN7SKP220-201ENST00000410611 288 ntBASIC4.04□□□□□ -1.76
CCDC87Q9NVE4 HMGN2P20-201ENST00000437531 273 ntBASIC4.04□□□□□ -1.76
CCDC87Q9NVE4 CENPBD1P1-201ENST00000464061 469 ntBASIC4.04□□□□□ -1.76
CCDC87Q9NVE4 APOA2-205ENST00000468465 421 ntTSL 2 BASIC4.04□□□□□ -1.76
CCDC87Q9NVE4 RPL36AP48-201ENST00000485521 314 ntBASIC4.04□□□□□ -1.76
CCDC87Q9NVE4 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC4.04□□□□□ -1.76
CCDC87Q9NVE4 TGIF1P1-201ENST00000558095 802 ntBASIC4.04□□□□□ -1.76
CCDC87Q9NVE4 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC4.04□□□□□ -1.76
CCDC87Q9NVE4 MIR4738-201ENST00000579134 87 ntBASIC4.04□□□□□ -1.76
CCDC87Q9NVE4 AC005828.6-201ENST00000606610 232 ntBASIC4.04□□□□□ -1.76
CCDC87Q9NVE4 MIR622-201ENST00000638396 96 ntBASIC4.04□□□□□ -1.76
CCDC87Q9NVE4 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC4.04□□□□□ -1.76
CCDC87Q9NVE4 AC069528.2-201ENST00000624849 1991 ntBASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 IL33-202ENST00000417746 2327 ntTSL 2 BASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 RNU4-80P-201ENST00000363200 141 ntBASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 Y_RNA.233-201ENST00000364407 101 ntBASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 SNORA71.1-201ENST00000364523 117 ntBASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 RNU6-47P-201ENST00000383866 107 ntBASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 AC004386.2-201ENST00000441858 148 ntBASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 AC009237.7-201ENST00000447357 229 ntBASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 AL031183.1-201ENST00000457667 207 ntBASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 AC145146.1-201ENST00000496370 254 ntBASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 AC091826.1-201ENST00000514065 313 ntBASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 Y_RNA.703-201ENST00000516846 111 ntBASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 MIR4474-201ENST00000579189 78 ntBASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 AC010620.2-201ENST00000600135 313 ntBASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 AC092628.2-201ENST00000622492 339 ntBASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 AC068205.3-201ENST00000636385 468 ntBASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 ANKRD36BP1-201ENST00000358576 1779 ntBASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC4.03□□□□□ -1.76
CCDC87Q9NVE4 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC4.03□□□□□ -1.77
CCDC87Q9NVE4 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC87Q9NVE4 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
CCDC87Q9NVE4 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC87Q9NVE4 Y_RNA.304-201ENST00000365011 112 ntBASIC4.02□□□□□ -1.77
CCDC87Q9NVE4 RNU6-918P-201ENST00000391219 106 ntBASIC4.02□□□□□ -1.77
CCDC87Q9NVE4 AC027124.2-201ENST00000428249 105 ntBASIC4.02□□□□□ -1.77
CCDC87Q9NVE4 AC112771.1-201ENST00000463581 102 ntBASIC4.02□□□□□ -1.77
CCDC87Q9NVE4 NDUFB9P3-201ENST00000521269 501 ntBASIC4.02□□□□□ -1.77
CCDC87Q9NVE4 MIR5006-201ENST00000583027 110 ntBASIC4.02□□□□□ -1.77
CCDC87Q9NVE4 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC4.02□□□□□ -1.77
CCDC87Q9NVE4 Y_RNA.240-201ENST00000364469 95 ntBASIC4.01□□□□□ -1.77
CCDC87Q9NVE4 Y_RNA.415-201ENST00000384012 112 ntBASIC4.01□□□□□ -1.77
CCDC87Q9NVE4 RNU6-966P-201ENST00000516479 104 ntBASIC4.01□□□□□ -1.77
CCDC87Q9NVE4 RNU6-107P-201ENST00000516643 102 ntBASIC4.01□□□□□ -1.77
CCDC87Q9NVE4 RNU6-255P-201ENST00000516957 105 ntBASIC4.01□□□□□ -1.77
CCDC87Q9NVE4 RNU2-12P-201ENST00000517216 168 ntBASIC4.01□□□□□ -1.77
CCDC87Q9NVE4 MIR5692C2-201ENST00000577959 77 ntBASIC4.01□□□□□ -1.77
CCDC87Q9NVE4 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC4.01□□□□□ -1.77
CCDC87Q9NVE4 U2.22-201ENST00000636441 106 ntBASIC4.01□□□□□ -1.77
CCDC87Q9NVE4 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC4.01□□□□□ -1.77
CCDC87Q9NVE4 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC87Q9NVE4 BCLAF1P1-201ENST00000505813 2752 ntBASIC4.01□□□□□ -1.77
CCDC87Q9NVE4 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC87Q9NVE4 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms