Protein–RNA interactions for Protein: Q9H9Y2

RPF1, Ribosome production factor 1, humanhuman

Known RBP Predictions only

Length 349 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPF1Q9H9Y2 MIR6128-201ENST00000615528 109 ntBASIC1.93□□□□□ -2.1
RPF1Q9H9Y2 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.93□□□□□ -2.1
RPF1Q9H9Y2 KPNA2P1-201ENST00000458289 1591 ntBASIC1.93□□□□□ -2.1
RPF1Q9H9Y2 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
RPF1Q9H9Y2 CBX3P1-201ENST00000325243 554 ntBASIC1.92□□□□□ -2.1
RPF1Q9H9Y2 Y_RNA.72-201ENST00000362894 103 ntBASIC1.92□□□□□ -2.1
RPF1Q9H9Y2 Y_RNA.160-201ENST00000363677 92 ntBASIC1.92□□□□□ -2.1
RPF1Q9H9Y2 Y_RNA.279-201ENST00000364763 95 ntBASIC1.92□□□□□ -2.1
RPF1Q9H9Y2 MT-TL1-201ENST00000386347 75 ntBASIC1.92□□□□□ -2.1
RPF1Q9H9Y2 SNORA12.2-201ENST00000391040 156 ntBASIC1.92□□□□□ -2.1
RPF1Q9H9Y2 SUMO2P12-201ENST00000405924 140 ntBASIC1.92□□□□□ -2.1
RPF1Q9H9Y2 RNA5SP489-201ENST00000410986 109 ntBASIC1.92□□□□□ -2.1
RPF1Q9H9Y2 AL358453.1-201ENST00000422522 250 ntBASIC1.92□□□□□ -2.1
RPF1Q9H9Y2 USP9YP30-201ENST00000430729 455 ntBASIC1.92□□□□□ -2.1
RPF1Q9H9Y2 Z82188.1-201ENST00000436709 154 ntBASIC1.92□□□□□ -2.1
RPF1Q9H9Y2 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC1.92□□□□□ -2.1
RPF1Q9H9Y2 AC087477.1-201ENST00000465747 340 ntBASIC1.92□□□□□ -2.1
RPF1Q9H9Y2 AC132942.1-201ENST00000486753 483 ntBASIC1.92□□□□□ -2.1
RPF1Q9H9Y2 RNA5SP364-201ENST00000516938 78 ntBASIC1.92□□□□□ -2.1
RPF1Q9H9Y2 RNA5SP490-201ENST00000517141 136 ntBASIC1.92□□□□□ -2.1
RPF1Q9H9Y2 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.92□□□□□ -2.1
RPF1Q9H9Y2 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.92□□□□□ -2.1
RPF1Q9H9Y2 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.92□□□□□ -2.1
RPF1Q9H9Y2 AC010928.2-201ENST00000588017 287 ntBASIC1.92□□□□□ -2.1
RPF1Q9H9Y2 AC091932.3-201ENST00000624223 323 ntBASIC1.92□□□□□ -2.1
RPF1Q9H9Y2 Y_RNA.99-201ENST00000363138 105 ntBASIC1.91□□□□□ -2.1
RPF1Q9H9Y2 Y_RNA.140-201ENST00000363474 103 ntBASIC1.91□□□□□ -2.1
RPF1Q9H9Y2 Y_RNA.184-201ENST00000363884 108 ntBASIC1.91□□□□□ -2.1
RPF1Q9H9Y2 RNU6-1283P-201ENST00000365314 105 ntBASIC1.91□□□□□ -2.1
RPF1Q9H9Y2 SNORA18.2-201ENST00000383865 132 ntBASIC1.91□□□□□ -2.1
RPF1Q9H9Y2 Y_RNA.390-201ENST00000383932 102 ntBASIC1.91□□□□□ -2.1
RPF1Q9H9Y2 RNU6-842P-201ENST00000384269 107 ntBASIC1.91□□□□□ -2.1
RPF1Q9H9Y2 Y_RNA.473-201ENST00000384333 102 ntBASIC1.91□□□□□ -2.1
RPF1Q9H9Y2 SNORA51.11-201ENST00000384442 131 ntBASIC1.91□□□□□ -2.1
RPF1Q9H9Y2 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
RPF1Q9H9Y2 RNU6-876P-201ENST00000391295 104 ntBASIC1.91□□□□□ -2.1
RPF1Q9H9Y2 MIR548F5-201ENST00000408421 86 ntBASIC1.91□□□□□ -2.1
RPF1Q9H9Y2 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
RPF1Q9H9Y2 MTND1P23-201ENST00000416931 372 ntBASIC1.91□□□□□ -2.1
RPF1Q9H9Y2 RPL23AP6-201ENST00000446637 472 ntBASIC1.91□□□□□ -2.1
RPF1Q9H9Y2 TOMM22P6-201ENST00000465035 409 ntBASIC1.91□□□□□ -2.1
RPF1Q9H9Y2 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.91□□□□□ -2.1
RPF1Q9H9Y2 SNORA25.15-201ENST00000516487 89 ntBASIC1.91□□□□□ -2.1
RPF1Q9H9Y2 AP005660.1-201ENST00000522972 293 ntBASIC1.91□□□□□ -2.1
RPF1Q9H9Y2 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.91□□□□□ -2.1
RPF1Q9H9Y2 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC1.91□□□□□ -2.1
RPF1Q9H9Y2 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.91□□□□□ -2.1
RPF1Q9H9Y2 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.91□□□□□ -2.1
RPF1Q9H9Y2 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.91□□□□□ -2.1
RPF1Q9H9Y2 MIR340-201ENST00000362125 95 ntBASIC1.9□□□□□ -2.11
RPF1Q9H9Y2 RNU1-58P-201ENST00000362413 163 ntBASIC1.9□□□□□ -2.11
RPF1Q9H9Y2 RNU1-17P-201ENST00000363022 152 ntBASIC1.9□□□□□ -2.11
RPF1Q9H9Y2 RNU4-52P-201ENST00000384209 138 ntBASIC1.9□□□□□ -2.11
RPF1Q9H9Y2 U8.10-201ENST00000384260 133 ntBASIC1.9□□□□□ -2.11
RPF1Q9H9Y2 SNORA8-201ENST00000384574 139 ntBASIC1.9□□□□□ -2.11
RPF1Q9H9Y2 RNU11-3P-201ENST00000391111 133 ntBASIC1.9□□□□□ -2.11
RPF1Q9H9Y2 RNA5SP212-201ENST00000391223 107 ntBASIC1.9□□□□□ -2.11
RPF1Q9H9Y2 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
RPF1Q9H9Y2 FGF7P8-201ENST00000402994 292 ntBASIC1.9□□□□□ -2.11
RPF1Q9H9Y2 MIR548K-201ENST00000408406 116 ntBASIC1.9□□□□□ -2.11
RPF1Q9H9Y2 RPS26P42-201ENST00000413485 326 ntBASIC1.9□□□□□ -2.11
RPF1Q9H9Y2 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.9□□□□□ -2.11
RPF1Q9H9Y2 AC244636.1-201ENST00000421152 228 ntBASIC1.9□□□□□ -2.11
RPF1Q9H9Y2 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.9□□□□□ -2.11
RPF1Q9H9Y2 OR2AQ1P-201ENST00000451972 200 ntBASIC1.9□□□□□ -2.11
RPF1Q9H9Y2 ACA59.1-201ENST00000515966 143 ntBASIC1.9□□□□□ -2.11
RPF1Q9H9Y2 RNU7-30P-201ENST00000516835 62 ntBASIC1.9□□□□□ -2.11
RPF1Q9H9Y2 RNU6-250P-201ENST00000516958 103 ntBASIC1.9□□□□□ -2.11
RPF1Q9H9Y2 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.9□□□□□ -2.11
RPF1Q9H9Y2 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.9□□□□□ -2.11
RPF1Q9H9Y2 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.9□□□□□ -2.11
RPF1Q9H9Y2 MIR8081-201ENST00000611533 95 ntBASIC1.9□□□□□ -2.11
RPF1Q9H9Y2 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.9□□□□□ -2.11
RPF1Q9H9Y2 AC005296.1-201ENST00000616145 209 ntBASIC1.9□□□□□ -2.11
RPF1Q9H9Y2 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.9□□□□□ -2.11
RPF1Q9H9Y2 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
RPF1Q9H9Y2 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.9□□□□□ -2.11
RPF1Q9H9Y2 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.89□□□□□ -2.11
RPF1Q9H9Y2 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
RPF1Q9H9Y2 RNU1-76P-201ENST00000362903 159 ntBASIC1.89□□□□□ -2.11
RPF1Q9H9Y2 SNORD114-6-201ENST00000364393 72 ntBASIC1.89□□□□□ -2.11
RPF1Q9H9Y2 Y_RNA.332-201ENST00000365271 113 ntBASIC1.89□□□□□ -2.11
RPF1Q9H9Y2 Y_RNA.339-201ENST00000365325 102 ntBASIC1.89□□□□□ -2.11
RPF1Q9H9Y2 RNU6-767P-201ENST00000384132 107 ntBASIC1.89□□□□□ -2.11
RPF1Q9H9Y2 MIR597-201ENST00000384968 97 ntBASIC1.89□□□□□ -2.11
RPF1Q9H9Y2 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
RPF1Q9H9Y2 AL357139.1-201ENST00000407792 426 ntBASIC1.89□□□□□ -2.11
RPF1Q9H9Y2 RNU6-174P-201ENST00000410406 106 ntBASIC1.89□□□□□ -2.11
RPF1Q9H9Y2 AC004866.1-201ENST00000411748 78 ntBASIC1.89□□□□□ -2.11
RPF1Q9H9Y2 PDCL2P1-201ENST00000419302 352 ntBASIC1.89□□□□□ -2.11
RPF1Q9H9Y2 EIF4EP2-201ENST00000422816 654 ntBASIC1.89□□□□□ -2.11
RPF1Q9H9Y2 SNRPEP8-201ENST00000442866 260 ntBASIC1.89□□□□□ -2.11
RPF1Q9H9Y2 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC1.89□□□□□ -2.11
RPF1Q9H9Y2 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC1.89□□□□□ -2.11
RPF1Q9H9Y2 RNU7-14P-201ENST00000459331 62 ntBASIC1.89□□□□□ -2.11
RPF1Q9H9Y2 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.89□□□□□ -2.11
RPF1Q9H9Y2 RNU5F-4P-201ENST00000516581 114 ntBASIC1.89□□□□□ -2.11
RPF1Q9H9Y2 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.89□□□□□ -2.11
RPF1Q9H9Y2 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC1.89□□□□□ -2.11
RPF1Q9H9Y2 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 170.1 ms