Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 RNU6ATAC23P-201ENST00000408448 123 ntBASIC3.16□□□□□ -1.9
PCIF1Q9H4Z3 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.16□□□□□ -1.9
PCIF1Q9H4Z3 MTND4LP30-201ENST00000454092 297 ntBASIC3.16□□□□□ -1.9
PCIF1Q9H4Z3 RNU6-625P-201ENST00000459412 107 ntBASIC3.16□□□□□ -1.9
PCIF1Q9H4Z3 AC140059.1-201ENST00000489238 361 ntBASIC3.16□□□□□ -1.9
PCIF1Q9H4Z3 RPS23P5-201ENST00000495419 428 ntBASIC3.16□□□□□ -1.9
PCIF1Q9H4Z3 AC107222.1-201ENST00000510899 637 ntBASIC3.16□□□□□ -1.9
PCIF1Q9H4Z3 RNU6-1023P-201ENST00000516137 106 ntBASIC3.16□□□□□ -1.9
PCIF1Q9H4Z3 Y_RNA.673-201ENST00000516306 88 ntBASIC3.16□□□□□ -1.9
PCIF1Q9H4Z3 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.16□□□□□ -1.9
PCIF1Q9H4Z3 AC055872.1-201ENST00000570978 278 ntBASIC3.16□□□□□ -1.9
PCIF1Q9H4Z3 AC005000.2-201ENST00000605468 310 ntBASIC3.16□□□□□ -1.9
PCIF1Q9H4Z3 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.16□□□□□ -1.9
PCIF1Q9H4Z3 MIR7515-201ENST00000637837 67 ntBASIC3.16□□□□□ -1.9
PCIF1Q9H4Z3 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
PCIF1Q9H4Z3 RNU1-35P-201ENST00000362782 153 ntBASIC3.15□□□□□ -1.91
PCIF1Q9H4Z3 RNU6-290P-201ENST00000365212 101 ntBASIC3.15□□□□□ -1.91
PCIF1Q9H4Z3 SNORA9.2-201ENST00000365361 133 ntBASIC3.15□□□□□ -1.91
PCIF1Q9H4Z3 Y_RNA.415-201ENST00000384012 112 ntBASIC3.15□□□□□ -1.91
PCIF1Q9H4Z3 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.15□□□□□ -1.91
PCIF1Q9H4Z3 RNU6-847P-201ENST00000411115 108 ntBASIC3.15□□□□□ -1.91
PCIF1Q9H4Z3 ELOCP21-201ENST00000412558 336 ntBASIC3.15□□□□□ -1.91
PCIF1Q9H4Z3 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC3.15□□□□□ -1.91
PCIF1Q9H4Z3 RPL30P4-201ENST00000429309 333 ntBASIC3.15□□□□□ -1.91
PCIF1Q9H4Z3 AC009969.1-201ENST00000438726 172 ntBASIC3.15□□□□□ -1.91
PCIF1Q9H4Z3 AC004386.2-201ENST00000441858 148 ntBASIC3.15□□□□□ -1.91
PCIF1Q9H4Z3 AP004217.1-201ENST00000480579 346 ntBASIC3.15□□□□□ -1.91
PCIF1Q9H4Z3 HSPE1P18-201ENST00000517602 280 ntBASIC3.15□□□□□ -1.91
PCIF1Q9H4Z3 AC018448.1-201ENST00000552843 316 ntBASIC3.15□□□□□ -1.91
PCIF1Q9H4Z3 AC027176.1-201ENST00000560204 514 ntBASIC3.15□□□□□ -1.91
PCIF1Q9H4Z3 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.15□□□□□ -1.91
PCIF1Q9H4Z3 AC010900.2-201ENST00000604508 210 ntBASIC3.15□□□□□ -1.91
PCIF1Q9H4Z3 AC011373.1-201ENST00000607270 237 ntBASIC3.15□□□□□ -1.91
PCIF1Q9H4Z3 AC127459.3-201ENST00000624328 466 ntBASIC3.15□□□□□ -1.91
PCIF1Q9H4Z3 AC090517.3-201ENST00000625170 141 ntBASIC3.15□□□□□ -1.91
PCIF1Q9H4Z3 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.15□□□□□ -1.91
PCIF1Q9H4Z3 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
PCIF1Q9H4Z3 AC009487.2-201ENST00000420969 6821 ntBASIC3.14□□□□□ -1.91
PCIF1Q9H4Z3 RNU4-90P-201ENST00000362773 141 ntBASIC3.14□□□□□ -1.91
PCIF1Q9H4Z3 SNORD32B-201ENST00000364460 84 ntBASIC3.14□□□□□ -1.91
PCIF1Q9H4Z3 RNU5A-5P-201ENST00000411054 116 ntBASIC3.14□□□□□ -1.91
PCIF1Q9H4Z3 AL139132.1-201ENST00000431587 344 ntBASIC3.14□□□□□ -1.91
PCIF1Q9H4Z3 AC091179.1-201ENST00000461606 579 ntBASIC3.14□□□□□ -1.91
PCIF1Q9H4Z3 SEM1P1-201ENST00000506694 209 ntBASIC3.14□□□□□ -1.91
PCIF1Q9H4Z3 AC074133.1-201ENST00000515696 183 ntBASIC3.14□□□□□ -1.91
PCIF1Q9H4Z3 RNU7-110P-201ENST00000516891 62 ntBASIC3.14□□□□□ -1.91
PCIF1Q9H4Z3 CYCSP23-201ENST00000519781 313 ntBASIC3.14□□□□□ -1.91
PCIF1Q9H4Z3 AP002001.1-203ENST00000534002 267 ntBASIC3.14□□□□□ -1.91
PCIF1Q9H4Z3 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC3.14□□□□□ -1.91
PCIF1Q9H4Z3 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC3.14□□□□□ -1.91
PCIF1Q9H4Z3 AC005176.2-201ENST00000596933 147 ntBASIC3.14□□□□□ -1.91
PCIF1Q9H4Z3 AC010620.2-201ENST00000600135 313 ntBASIC3.14□□□□□ -1.91
PCIF1Q9H4Z3 AL713866.2-201ENST00000603579 219 ntBASIC3.14□□□□□ -1.91
PCIF1Q9H4Z3 SNORD113-5-201ENST00000607261 78 ntBASIC3.14□□□□□ -1.91
PCIF1Q9H4Z3 TCL6_2.1-201ENST00000615162 119 ntBASIC3.14□□□□□ -1.91
PCIF1Q9H4Z3 SNORA50A-202ENST00000629536 136 ntBASIC3.14□□□□□ -1.91
PCIF1Q9H4Z3 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC3.14□□□□□ -1.91
PCIF1Q9H4Z3 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
PCIF1Q9H4Z3 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.13□□□□□ -1.91
PCIF1Q9H4Z3 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.13□□□□□ -1.91
PCIF1Q9H4Z3 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
PCIF1Q9H4Z3 Y_RNA.230-201ENST00000364348 109 ntBASIC3.13□□□□□ -1.91
PCIF1Q9H4Z3 RNU6-1175P-201ENST00000365200 107 ntBASIC3.13□□□□□ -1.91
PCIF1Q9H4Z3 MIR29B2-201ENST00000385055 81 ntBASIC3.13□□□□□ -1.91
PCIF1Q9H4Z3 AL033519.2-201ENST00000403958 392 ntBASIC3.13□□□□□ -1.91
PCIF1Q9H4Z3 RNA5SP504-201ENST00000410676 117 ntBASIC3.13□□□□□ -1.91
PCIF1Q9H4Z3 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.13□□□□□ -1.91
PCIF1Q9H4Z3 RAB28P5-201ENST00000427490 651 ntBASIC3.13□□□□□ -1.91
PCIF1Q9H4Z3 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.13□□□□□ -1.91
PCIF1Q9H4Z3 MICF-203ENST00000432679 129 ntBASIC3.13□□□□□ -1.91
PCIF1Q9H4Z3 AC009237.7-201ENST00000447357 229 ntBASIC3.13□□□□□ -1.91
PCIF1Q9H4Z3 RPL23AP3-201ENST00000453844 468 ntBASIC3.13□□□□□ -1.91
PCIF1Q9H4Z3 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.13□□□□□ -1.91
PCIF1Q9H4Z3 AC092185.1-201ENST00000491371 97 ntBASIC3.13□□□□□ -1.91
PCIF1Q9H4Z3 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.13□□□□□ -1.91
PCIF1Q9H4Z3 KRTAP13-6P-201ENST00000508999 371 ntBASIC3.13□□□□□ -1.91
PCIF1Q9H4Z3 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC3.13□□□□□ -1.91
PCIF1Q9H4Z3 SCARNA24.2-201ENST00000516968 130 ntBASIC3.13□□□□□ -1.91
PCIF1Q9H4Z3 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.13□□□□□ -1.91
PCIF1Q9H4Z3 MIR5006-201ENST00000583027 110 ntBASIC3.13□□□□□ -1.91
PCIF1Q9H4Z3 AL137790.1-201ENST00000634283 177 ntBASIC3.13□□□□□ -1.91
PCIF1Q9H4Z3 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.13□□□□□ -1.91
PCIF1Q9H4Z3 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.12□□□□□ -1.91
PCIF1Q9H4Z3 AC103988.1-201ENST00000566382 2177 ntBASIC3.12□□□□□ -1.91
PCIF1Q9H4Z3 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
PCIF1Q9H4Z3 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
PCIF1Q9H4Z3 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
PCIF1Q9H4Z3 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
PCIF1Q9H4Z3 SNORA68.1-201ENST00000364537 132 ntBASIC3.12□□□□□ -1.91
PCIF1Q9H4Z3 Y_RNA.257-201ENST00000364596 102 ntBASIC3.12□□□□□ -1.91
PCIF1Q9H4Z3 Y_RNA.416-201ENST00000384014 113 ntBASIC3.12□□□□□ -1.91
PCIF1Q9H4Z3 RNU6-1026P-201ENST00000384465 108 ntBASIC3.12□□□□□ -1.91
PCIF1Q9H4Z3 RNU6-1274P-201ENST00000384557 107 ntBASIC3.12□□□□□ -1.91
PCIF1Q9H4Z3 RNU6-21P-201ENST00000384710 107 ntBASIC3.12□□□□□ -1.91
PCIF1Q9H4Z3 MIR181A2-201ENST00000384863 110 ntBASIC3.12□□□□□ -1.91
PCIF1Q9H4Z3 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
PCIF1Q9H4Z3 MIR548H3-201ENST00000408771 118 ntBASIC3.12□□□□□ -1.91
PCIF1Q9H4Z3 Y_RNA.597-201ENST00000410463 100 ntBASIC3.12□□□□□ -1.91
PCIF1Q9H4Z3 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC3.12□□□□□ -1.91
PCIF1Q9H4Z3 AC083906.5-201ENST00000503722 328 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms