Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AC012640.5-201ENST00000623897 319 ntBASIC1.8□□□□□ -2.12
LIME1Q9H400 AC099654.5-201ENST00000636479 350 ntBASIC1.8□□□□□ -2.12
LIME1Q9H400 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
LIME1Q9H400 RNU6-595P-201ENST00000363944 107 ntBASIC1.79□□□□□ -2.12
LIME1Q9H400 Y_RNA.533-201ENST00000384596 114 ntBASIC1.79□□□□□ -2.12
LIME1Q9H400 MIR1262-201ENST00000408276 93 ntBASIC1.79□□□□□ -2.12
LIME1Q9H400 RNU4-14P-201ENST00000410858 122 ntBASIC1.79□□□□□ -2.12
LIME1Q9H400 RNU2-41P-201ENST00000410991 178 ntBASIC1.79□□□□□ -2.12
LIME1Q9H400 AL021397.1-201ENST00000451806 248 ntBASIC1.79□□□□□ -2.12
LIME1Q9H400 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.79□□□□□ -2.12
LIME1Q9H400 MTND4P17-201ENST00000470444 350 ntBASIC1.79□□□□□ -2.12
LIME1Q9H400 FO393415.2-201ENST00000480085 343 ntBASIC1.79□□□□□ -2.12
LIME1Q9H400 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.79□□□□□ -2.12
LIME1Q9H400 RPL23AP63-201ENST00000498752 471 ntBASIC1.79□□□□□ -2.12
LIME1Q9H400 RNU7-193P-201ENST00000516723 65 ntBASIC1.79□□□□□ -2.12
LIME1Q9H400 Y_RNA.708-201ENST00000516950 96 ntBASIC1.79□□□□□ -2.12
LIME1Q9H400 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.79□□□□□ -2.12
LIME1Q9H400 GNAI2P1-201ENST00000541815 315 ntBASIC1.79□□□□□ -2.12
LIME1Q9H400 AL121579.1-201ENST00000555129 305 ntBASIC1.79□□□□□ -2.12
LIME1Q9H400 AC026470.2-201ENST00000561492 181 ntBASIC1.79□□□□□ -2.12
LIME1Q9H400 MIR3126-201ENST00000577443 74 ntBASIC1.79□□□□□ -2.12
LIME1Q9H400 AC026271.5-201ENST00000577873 130 ntBASIC1.79□□□□□ -2.12
LIME1Q9H400 MIR5701-3-201ENST00000578890 82 ntBASIC1.79□□□□□ -2.12
LIME1Q9H400 MIR548S-201ENST00000581352 82 ntBASIC1.79□□□□□ -2.12
LIME1Q9H400 MIR5701-1-201ENST00000585138 82 ntBASIC1.79□□□□□ -2.12
LIME1Q9H400 AC016727.2-201ENST00000603988 621 ntBASIC1.79□□□□□ -2.12
LIME1Q9H400 RMST_6.1-201ENST00000611980 203 ntBASIC1.79□□□□□ -2.12
LIME1Q9H400 MIR5701-2-201ENST00000615634 82 ntBASIC1.79□□□□□ -2.12
LIME1Q9H400 AC092794.2-201ENST00000620933 563 ntBASIC1.79□□□□□ -2.12
LIME1Q9H400 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.79□□□□□ -2.12
LIME1Q9H400 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
LIME1Q9H400 KPNA2P1-201ENST00000458289 1591 ntBASIC1.79□□□□□ -2.12
LIME1Q9H400 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC1.78□□□□□ -2.12
LIME1Q9H400 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC1.78□□□□□ -2.12
LIME1Q9H400 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
LIME1Q9H400 Y_RNA.99-201ENST00000363138 105 ntBASIC1.78□□□□□ -2.12
LIME1Q9H400 RNA5SP138-201ENST00000365098 114 ntBASIC1.78□□□□□ -2.12
LIME1Q9H400 Y_RNA.332-201ENST00000365271 113 ntBASIC1.78□□□□□ -2.12
LIME1Q9H400 RNA5SP37-201ENST00000365420 130 ntBASIC1.78□□□□□ -2.12
LIME1Q9H400 SNORD14D-201ENST00000384390 87 ntBASIC1.78□□□□□ -2.12
LIME1Q9H400 RNU6-1093P-201ENST00000391194 107 ntBASIC1.78□□□□□ -2.12
LIME1Q9H400 HMGN2P39-201ENST00000398005 273 ntBASIC1.78□□□□□ -2.12
LIME1Q9H400 AL357139.1-201ENST00000407792 426 ntBASIC1.78□□□□□ -2.12
LIME1Q9H400 RNU6-1050P-201ENST00000410388 107 ntBASIC1.78□□□□□ -2.12
LIME1Q9H400 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC1.78□□□□□ -2.12
LIME1Q9H400 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.78□□□□□ -2.12
LIME1Q9H400 Z82188.1-201ENST00000436709 154 ntBASIC1.78□□□□□ -2.12
LIME1Q9H400 Y_RNA.635-201ENST00000459041 101 ntBASIC1.78□□□□□ -2.12
LIME1Q9H400 AC107032.1-201ENST00000485945 480 ntBASIC1.78□□□□□ -2.12
LIME1Q9H400 RPL30P10-201ENST00000488148 337 ntBASIC1.78□□□□□ -2.12
LIME1Q9H400 ATP5EP1-201ENST00000510257 156 ntBASIC1.78□□□□□ -2.12
LIME1Q9H400 MIR449C-201ENST00000516047 92 ntBASIC1.78□□□□□ -2.12
LIME1Q9H400 RNU6-277P-201ENST00000516272 106 ntBASIC1.78□□□□□ -2.12
LIME1Q9H400 AC110588.1-201ENST00000559699 137 ntBASIC1.78□□□□□ -2.12
LIME1Q9H400 AL031274.2-201ENST00000599419 203 ntBASIC1.78□□□□□ -2.12
LIME1Q9H400 AL359314.1-201ENST00000616913 261 ntBASIC1.78□□□□□ -2.12
LIME1Q9H400 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.78□□□□□ -2.12
LIME1Q9H400 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.78□□□□□ -2.12
LIME1Q9H400 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
LIME1Q9H400 Clostridiales-1.3-201ENST00000637703 147 ntBASIC1.78□□□□□ -2.12
LIME1Q9H400 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.78□□□□□ -2.12
LIME1Q9H400 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
LIME1Q9H400 AL596028.1-201ENST00000326971 197 ntBASIC1.77□□□□□ -2.13
LIME1Q9H400 RNU6-137P-201ENST00000363680 108 ntBASIC1.77□□□□□ -2.13
LIME1Q9H400 RNU6-17P-201ENST00000384245 107 ntBASIC1.77□□□□□ -2.13
LIME1Q9H400 RNU6-18P-201ENST00000384527 107 ntBASIC1.77□□□□□ -2.13
LIME1Q9H400 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.77□□□□□ -2.13
LIME1Q9H400 RNA5SP270-201ENST00000411361 118 ntBASIC1.77□□□□□ -2.13
LIME1Q9H400 AL139156.1-201ENST00000412785 841 ntBASIC1.77□□□□□ -2.13
LIME1Q9H400 MTATP6P23-201ENST00000440153 476 ntBASIC1.77□□□□□ -2.13
LIME1Q9H400 AC025033.1-201ENST00000463883 194 ntBASIC1.77□□□□□ -2.13
LIME1Q9H400 AC091951.2-201ENST00000500762 203 ntBASIC1.77□□□□□ -2.13
LIME1Q9H400 FGF7P4-201ENST00000509595 295 ntBASIC1.77□□□□□ -2.13
LIME1Q9H400 AC093259.1-201ENST00000509755 300 ntBASIC1.77□□□□□ -2.13
LIME1Q9H400 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.77□□□□□ -2.13
LIME1Q9H400 RNU6-1098P-201ENST00000516772 96 ntBASIC1.77□□□□□ -2.13
LIME1Q9H400 AC087441.2-201ENST00000529141 262 ntBASIC1.77□□□□□ -2.13
LIME1Q9H400 CBX3P8-201ENST00000532412 525 ntBASIC1.77□□□□□ -2.13
LIME1Q9H400 AC027288.2-201ENST00000553028 243 ntBASIC1.77□□□□□ -2.13
LIME1Q9H400 AC090517.1-201ENST00000569307 266 ntBASIC1.77□□□□□ -2.13
LIME1Q9H400 AC104581.2-201ENST00000572227 430 ntBASIC1.77□□□□□ -2.13
LIME1Q9H400 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.77□□□□□ -2.13
LIME1Q9H400 AC005014.2-201ENST00000607795 599 ntBASIC1.77□□□□□ -2.13
LIME1Q9H400 AC009229.3-201ENST00000608056 282 ntBASIC1.77□□□□□ -2.13
LIME1Q9H400 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.77□□□□□ -2.13
LIME1Q9H400 AC005562.2-201ENST00000618264 111 ntBASIC1.77□□□□□ -2.13
LIME1Q9H400 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.77□□□□□ -2.13
LIME1Q9H400 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.77□□□□□ -2.13
LIME1Q9H400 BX322639.1-202ENST00000423987 2213 ntBASIC1.76□□□□□ -2.13
LIME1Q9H400 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
LIME1Q9H400 MIR340-201ENST00000362125 95 ntBASIC1.76□□□□□ -2.13
LIME1Q9H400 Y_RNA.142-201ENST00000363491 102 ntBASIC1.76□□□□□ -2.13
LIME1Q9H400 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.76□□□□□ -2.13
LIME1Q9H400 SNORA18.2-201ENST00000383865 132 ntBASIC1.76□□□□□ -2.13
LIME1Q9H400 Y_RNA.404-201ENST00000383978 102 ntBASIC1.76□□□□□ -2.13
LIME1Q9H400 SNORA6-201ENST00000384033 151 ntBASIC1.76□□□□□ -2.13
LIME1Q9H400 Y_RNA.473-201ENST00000384333 102 ntBASIC1.76□□□□□ -2.13
LIME1Q9H400 MIR487A-201ENST00000385009 80 ntBASIC1.76□□□□□ -2.13
LIME1Q9H400 MIR29C-201ENST00000385231 88 ntBASIC1.76□□□□□ -2.13
LIME1Q9H400 SNORA40.19-201ENST00000390846 128 ntBASIC1.76□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms