Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 RPL23AP75-201ENST00000491601 451 ntBASIC2.4□□□□□ -2.03
USP44Q9H0E7 RNA5SP384-201ENST00000516615 116 ntBASIC2.4□□□□□ -2.03
USP44Q9H0E7 RNA5SP82-201ENST00000516707 92 ntBASIC2.4□□□□□ -2.03
USP44Q9H0E7 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.4□□□□□ -2.03
USP44Q9H0E7 AC005899.2-201ENST00000584353 90 ntBASIC2.4□□□□□ -2.03
USP44Q9H0E7 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
USP44Q9H0E7 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.39□□□□□ -2.03
USP44Q9H0E7 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.39□□□□□ -2.03
USP44Q9H0E7 Y_RNA.2-201ENST00000362330 96 ntBASIC2.39□□□□□ -2.03
USP44Q9H0E7 Y_RNA.48-201ENST00000362710 103 ntBASIC2.39□□□□□ -2.03
USP44Q9H0E7 RNU5F-3P-201ENST00000363767 117 ntBASIC2.39□□□□□ -2.03
USP44Q9H0E7 RNA5SP37-201ENST00000365420 130 ntBASIC2.39□□□□□ -2.03
USP44Q9H0E7 RNU6-1297P-201ENST00000384415 104 ntBASIC2.39□□□□□ -2.03
USP44Q9H0E7 Y_RNA.533-201ENST00000384596 114 ntBASIC2.39□□□□□ -2.03
USP44Q9H0E7 RNU6-331P-201ENST00000384724 107 ntBASIC2.39□□□□□ -2.03
USP44Q9H0E7 RNU6-1093P-201ENST00000391194 107 ntBASIC2.39□□□□□ -2.03
USP44Q9H0E7 AC003989.2-201ENST00000440224 169 ntBASIC2.39□□□□□ -2.03
USP44Q9H0E7 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.39□□□□□ -2.03
USP44Q9H0E7 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.39□□□□□ -2.03
USP44Q9H0E7 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.39□□□□□ -2.03
USP44Q9H0E7 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC2.39□□□□□ -2.03
USP44Q9H0E7 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC2.39□□□□□ -2.03
USP44Q9H0E7 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.39□□□□□ -2.03
USP44Q9H0E7 SNRPGP20-201ENST00000604477 205 ntBASIC2.39□□□□□ -2.03
USP44Q9H0E7 MIR6895-201ENST00000613497 78 ntBASIC2.39□□□□□ -2.03
USP44Q9H0E7 PISRT1.1-201ENST00000616930 107 ntBASIC2.39□□□□□ -2.03
USP44Q9H0E7 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.39□□□□□ -2.03
USP44Q9H0E7 ZNF299P-201ENST00000406845 1804 ntBASIC2.38□□□□□ -2.03
USP44Q9H0E7 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
USP44Q9H0E7 RNU4-79P-201ENST00000362764 141 ntBASIC2.38□□□□□ -2.03
USP44Q9H0E7 SNORD115-8-201ENST00000363856 82 ntBASIC2.38□□□□□ -2.03
USP44Q9H0E7 SNORD115-38-201ENST00000365037 82 ntBASIC2.38□□□□□ -2.03
USP44Q9H0E7 RNU6-234P-201ENST00000365229 104 ntBASIC2.38□□□□□ -2.03
USP44Q9H0E7 RNU6-378P-201ENST00000384324 107 ntBASIC2.38□□□□□ -2.03
USP44Q9H0E7 Y_RNA.509-201ENST00000384506 99 ntBASIC2.38□□□□□ -2.03
USP44Q9H0E7 RNU6-310P-201ENST00000384655 107 ntBASIC2.38□□□□□ -2.03
USP44Q9H0E7 Y_RNA.646-201ENST00000410980 101 ntBASIC2.38□□□□□ -2.03
USP44Q9H0E7 RNA5SP270-201ENST00000411361 118 ntBASIC2.38□□□□□ -2.03
USP44Q9H0E7 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
USP44Q9H0E7 AC087477.1-201ENST00000465747 340 ntBASIC2.38□□□□□ -2.03
USP44Q9H0E7 AF186996.7-201ENST00000492781 209 ntBASIC2.38□□□□□ -2.03
USP44Q9H0E7 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.38□□□□□ -2.03
USP44Q9H0E7 RNA5SP182-201ENST00000516064 82 ntBASIC2.38□□□□□ -2.03
USP44Q9H0E7 Y_RNA.675-201ENST00000516389 149 ntBASIC2.38□□□□□ -2.03
USP44Q9H0E7 CBX3P8-201ENST00000532412 525 ntBASIC2.38□□□□□ -2.03
USP44Q9H0E7 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.38□□□□□ -2.03
USP44Q9H0E7 AC009127.3-201ENST00000570531 403 ntBASIC2.38□□□□□ -2.03
USP44Q9H0E7 B3GNTL1P2-201ENST00000603673 288 ntBASIC2.38□□□□□ -2.03
USP44Q9H0E7 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.38□□□□□ -2.03
USP44Q9H0E7 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC2.37□□□□□ -2.03
USP44Q9H0E7 AC131280.1-202ENST00000624067 4211 ntBASIC2.37□□□□□ -2.03
USP44Q9H0E7 MIR504-201ENST00000385065 83 ntBASIC2.37□□□□□ -2.03
USP44Q9H0E7 AC243428.1-201ENST00000421099 264 ntBASIC2.37□□□□□ -2.03
USP44Q9H0E7 AL358453.1-201ENST00000422522 250 ntBASIC2.37□□□□□ -2.03
USP44Q9H0E7 USMG5P1-201ENST00000425964 177 ntBASIC2.37□□□□□ -2.03
USP44Q9H0E7 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.37□□□□□ -2.03
USP44Q9H0E7 MTCO3P10-201ENST00000455912 772 ntBASIC2.37□□□□□ -2.03
USP44Q9H0E7 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.37□□□□□ -2.03
USP44Q9H0E7 RNU7-175P-201ENST00000515915 61 ntBASIC2.37□□□□□ -2.03
USP44Q9H0E7 Y_RNA.718-201ENST00000517110 102 ntBASIC2.37□□□□□ -2.03
USP44Q9H0E7 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC2.37□□□□□ -2.03
USP44Q9H0E7 MIR5690-201ENST00000583739 73 ntBASIC2.37□□□□□ -2.03
USP44Q9H0E7 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC2.37□□□□□ -2.03
USP44Q9H0E7 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.37□□□□□ -2.03
USP44Q9H0E7 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
USP44Q9H0E7 RNU1-76P-201ENST00000362903 159 ntBASIC2.36□□□□□ -2.03
USP44Q9H0E7 Y_RNA.99-201ENST00000363138 105 ntBASIC2.36□□□□□ -2.03
USP44Q9H0E7 MIR153-2-201ENST00000385225 87 ntBASIC2.36□□□□□ -2.03
USP44Q9H0E7 RNY4P36-201ENST00000391116 96 ntBASIC2.36□□□□□ -2.03
USP44Q9H0E7 Z82188.1-201ENST00000436709 154 ntBASIC2.36□□□□□ -2.03
USP44Q9H0E7 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.36□□□□□ -2.03
USP44Q9H0E7 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC2.36□□□□□ -2.03
USP44Q9H0E7 snoU13.6-201ENST00000458785 104 ntBASIC2.36□□□□□ -2.03
USP44Q9H0E7 snoU13.30-201ENST00000458951 104 ntBASIC2.36□□□□□ -2.03
USP44Q9H0E7 SNORD19B-201ENST00000459623 84 ntBASIC2.36□□□□□ -2.03
USP44Q9H0E7 RPS23P5-201ENST00000495419 428 ntBASIC2.36□□□□□ -2.03
USP44Q9H0E7 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC2.36□□□□□ -2.03
USP44Q9H0E7 RPS29P11-201ENST00000496507 171 ntBASIC2.36□□□□□ -2.03
USP44Q9H0E7 SNORA4.4-201ENST00000515921 135 ntBASIC2.36□□□□□ -2.03
USP44Q9H0E7 RNU4ATAC7P-201ENST00000516280 125 ntBASIC2.36□□□□□ -2.03
USP44Q9H0E7 SCARNA16.2-201ENST00000516520 172 ntBASIC2.36□□□□□ -2.03
USP44Q9H0E7 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.36□□□□□ -2.03
USP44Q9H0E7 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC2.36□□□□□ -2.03
USP44Q9H0E7 MIR3124-201ENST00000582636 67 ntBASIC2.36□□□□□ -2.03
USP44Q9H0E7 AC010928.2-201ENST00000588017 287 ntBASIC2.36□□□□□ -2.03
USP44Q9H0E7 SNORD14A-201ENST00000606526 91 ntBASIC2.36□□□□□ -2.03
USP44Q9H0E7 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.36□□□□□ -2.03
USP44Q9H0E7 Y_RNA.61-201ENST00000362835 102 ntBASIC2.35□□□□□ -2.03
USP44Q9H0E7 RNU6-595P-201ENST00000363944 107 ntBASIC2.35□□□□□ -2.03
USP44Q9H0E7 Y_RNA.259-201ENST00000364619 101 ntBASIC2.35□□□□□ -2.03
USP44Q9H0E7 RNA5SP138-201ENST00000365098 114 ntBASIC2.35□□□□□ -2.03
USP44Q9H0E7 RNU6-245P-201ENST00000384020 107 ntBASIC2.35□□□□□ -2.03
USP44Q9H0E7 SNORA40.18-201ENST00000391200 128 ntBASIC2.35□□□□□ -2.03
USP44Q9H0E7 MTCYBP4-201ENST00000401524 249 ntBASIC2.35□□□□□ -2.03
USP44Q9H0E7 AC019129.1-201ENST00000403786 261 ntBASIC2.35□□□□□ -2.03
USP44Q9H0E7 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC2.35□□□□□ -2.03
USP44Q9H0E7 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC2.35□□□□□ -2.03
USP44Q9H0E7 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.35□□□□□ -2.03
USP44Q9H0E7 AL035666.1-201ENST00000446195 348 ntBASIC2.35□□□□□ -2.03
USP44Q9H0E7 RPL30P15-201ENST00000457129 321 ntBASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms