Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
CHMP4AQ9BY43 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
CHMP4AQ9BY43 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC2.29□□□□□ -2.04
CHMP4AQ9BY43 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.29□□□□□ -2.04
CHMP4AQ9BY43 HSPE1P9-201ENST00000440046 311 ntBASIC2.29□□□□□ -2.04
CHMP4AQ9BY43 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC2.29□□□□□ -2.04
CHMP4AQ9BY43 AC108210.2-201ENST00000503681 201 ntBASIC2.29□□□□□ -2.04
CHMP4AQ9BY43 AC092436.3-201ENST00000511788 257 ntBASIC2.29□□□□□ -2.04
CHMP4AQ9BY43 MIR3618-201ENST00000580330 88 ntBASIC2.29□□□□□ -2.04
CHMP4AQ9BY43 AC010928.2-201ENST00000588017 287 ntBASIC2.29□□□□□ -2.04
CHMP4AQ9BY43 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.29□□□□□ -2.04
CHMP4AQ9BY43 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC2.29□□□□□ -2.04
CHMP4AQ9BY43 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC2.29□□□□□ -2.04
CHMP4AQ9BY43 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
CHMP4AQ9BY43 Y_RNA.167-201ENST00000363735 109 ntBASIC2.28□□□□□ -2.04
CHMP4AQ9BY43 MIR586-201ENST00000385035 97 ntBASIC2.28□□□□□ -2.04
CHMP4AQ9BY43 MIR9-3-201ENST00000385084 90 ntBASIC2.28□□□□□ -2.04
CHMP4AQ9BY43 MIR450B-201ENST00000401182 78 ntBASIC2.28□□□□□ -2.04
CHMP4AQ9BY43 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC2.28□□□□□ -2.04
CHMP4AQ9BY43 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.28□□□□□ -2.04
CHMP4AQ9BY43 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC2.28□□□□□ -2.04
CHMP4AQ9BY43 RNA5SP54-201ENST00000516951 92 ntBASIC2.28□□□□□ -2.04
CHMP4AQ9BY43 RNU6-250P-201ENST00000516958 103 ntBASIC2.28□□□□□ -2.04
CHMP4AQ9BY43 CPDP1-201ENST00000579660 283 ntBASIC2.28□□□□□ -2.04
CHMP4AQ9BY43 SNRPGP19-201ENST00000603826 189 ntBASIC2.28□□□□□ -2.04
CHMP4AQ9BY43 AP000907.4-201ENST00000604143 237 ntBASIC2.28□□□□□ -2.04
CHMP4AQ9BY43 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.28□□□□□ -2.04
CHMP4AQ9BY43 AC084768.2-201ENST00000622736 221 ntBASIC2.28□□□□□ -2.04
CHMP4AQ9BY43 AL359757.2-201ENST00000624309 274 ntBASIC2.28□□□□□ -2.04
CHMP4AQ9BY43 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.27□□□□□ -2.05
CHMP4AQ9BY43 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
CHMP4AQ9BY43 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC2.27□□□□□ -2.05
CHMP4AQ9BY43 RNU6-862P-201ENST00000362804 105 ntBASIC2.27□□□□□ -2.05
CHMP4AQ9BY43 Y_RNA.123-201ENST00000363338 102 ntBASIC2.27□□□□□ -2.05
CHMP4AQ9BY43 RNU6-522P-201ENST00000364497 107 ntBASIC2.27□□□□□ -2.05
CHMP4AQ9BY43 RNU6-950P-201ENST00000384651 107 ntBASIC2.27□□□□□ -2.05
CHMP4AQ9BY43 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC2.27□□□□□ -2.05
CHMP4AQ9BY43 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.27□□□□□ -2.05
CHMP4AQ9BY43 MTCO1P20-201ENST00000425366 358 ntBASIC2.27□□□□□ -2.05
CHMP4AQ9BY43 AL645568.3-201ENST00000433683 316 ntBASIC2.27□□□□□ -2.05
CHMP4AQ9BY43 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC2.27□□□□□ -2.05
CHMP4AQ9BY43 NFU1P2-201ENST00000448700 469 ntBASIC2.27□□□□□ -2.05
CHMP4AQ9BY43 HSPE1P24-201ENST00000450782 238 ntBASIC2.27□□□□□ -2.05
CHMP4AQ9BY43 snoU13.6-201ENST00000458785 104 ntBASIC2.27□□□□□ -2.05
CHMP4AQ9BY43 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.27□□□□□ -2.05
CHMP4AQ9BY43 RN7SL274P-201ENST00000492268 272 ntBASIC2.27□□□□□ -2.05
CHMP4AQ9BY43 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.27□□□□□ -2.05
CHMP4AQ9BY43 AC011406.1-201ENST00000512440 370 ntBASIC2.27□□□□□ -2.05
CHMP4AQ9BY43 CTHRC1P1-201ENST00000605383 469 ntBASIC2.27□□□□□ -2.05
CHMP4AQ9BY43 MIR502-201ENST00000606349 86 ntBASIC2.27□□□□□ -2.05
CHMP4AQ9BY43 AC093783.1-201ENST00000612976 329 ntBASIC2.27□□□□□ -2.05
CHMP4AQ9BY43 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.26□□□□□ -2.05
CHMP4AQ9BY43 Y_RNA.38-201ENST00000362617 102 ntBASIC2.26□□□□□ -2.05
CHMP4AQ9BY43 RNU5F-3P-201ENST00000363767 117 ntBASIC2.26□□□□□ -2.05
CHMP4AQ9BY43 RNU6-1090P-201ENST00000364065 94 ntBASIC2.26□□□□□ -2.05
CHMP4AQ9BY43 Y_RNA.318-201ENST00000365131 97 ntBASIC2.26□□□□□ -2.05
CHMP4AQ9BY43 RNU6-439P-201ENST00000384188 106 ntBASIC2.26□□□□□ -2.05
CHMP4AQ9BY43 RNU6-975P-201ENST00000384296 105 ntBASIC2.26□□□□□ -2.05
CHMP4AQ9BY43 RNU6-482P-201ENST00000391068 107 ntBASIC2.26□□□□□ -2.05
CHMP4AQ9BY43 RNU6-908P-201ENST00000410160 94 ntBASIC2.26□□□□□ -2.05
CHMP4AQ9BY43 Y_RNA.615-201ENST00000410769 117 ntBASIC2.26□□□□□ -2.05
CHMP4AQ9BY43 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC2.26□□□□□ -2.05
CHMP4AQ9BY43 AC004386.2-201ENST00000441858 148 ntBASIC2.26□□□□□ -2.05
CHMP4AQ9BY43 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC2.26□□□□□ -2.05
CHMP4AQ9BY43 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC2.26□□□□□ -2.05
CHMP4AQ9BY43 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.26□□□□□ -2.05
CHMP4AQ9BY43 SNORA25.15-201ENST00000516487 89 ntBASIC2.26□□□□□ -2.05
CHMP4AQ9BY43 RNU6-902P-201ENST00000517212 91 ntBASIC2.26□□□□□ -2.05
CHMP4AQ9BY43 AC024995.1-201ENST00000523014 93 ntBASIC2.26□□□□□ -2.05
CHMP4AQ9BY43 MIR3122-201ENST00000577243 73 ntBASIC2.26□□□□□ -2.05
CHMP4AQ9BY43 ICE2P2-201ENST00000483823 2787 ntBASIC2.26□□□□□ -2.05
CHMP4AQ9BY43 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.25□□□□□ -2.05
CHMP4AQ9BY43 RNU6-1252P-201ENST00000363054 104 ntBASIC2.25□□□□□ -2.05
CHMP4AQ9BY43 RNU6-623P-201ENST00000363143 105 ntBASIC2.25□□□□□ -2.05
CHMP4AQ9BY43 RNU6-245P-201ENST00000384020 107 ntBASIC2.25□□□□□ -2.05
CHMP4AQ9BY43 MIR521-1-201ENST00000384902 87 ntBASIC2.25□□□□□ -2.05
CHMP4AQ9BY43 RNU6-325P-201ENST00000411132 105 ntBASIC2.25□□□□□ -2.05
CHMP4AQ9BY43 RPS20P15-201ENST00000412792 311 ntBASIC2.25□□□□□ -2.05
CHMP4AQ9BY43 AL589823.1-201ENST00000429577 183 ntBASIC2.25□□□□□ -2.05
CHMP4AQ9BY43 AC245047.4-201ENST00000433189 144 ntBASIC2.25□□□□□ -2.05
CHMP4AQ9BY43 AC099677.2-201ENST00000436385 175 ntBASIC2.25□□□□□ -2.05
CHMP4AQ9BY43 AC026371.1-201ENST00000551867 419 ntBASIC2.25□□□□□ -2.05
CHMP4AQ9BY43 SNORA77B-201ENST00000578179 125 ntBASIC2.25□□□□□ -2.05
CHMP4AQ9BY43 RNU6ATAC35P-201ENST00000609276 444 ntBASIC2.25□□□□□ -2.05
CHMP4AQ9BY43 FAM157A-202ENST00000615155 405 ntBASIC2.25□□□□□ -2.05
CHMP4AQ9BY43 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC2.25□□□□□ -2.05
CHMP4AQ9BY43 MIR1321-201ENST00000637766 79 ntBASIC2.25□□□□□ -2.05
CHMP4AQ9BY43 ZNF72P-201ENST00000425869 1908 ntBASIC2.25□□□□□ -2.05
CHMP4AQ9BY43 RNU6-545P-201ENST00000362681 104 ntBASIC2.24□□□□□ -2.05
CHMP4AQ9BY43 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC2.24□□□□□ -2.05
CHMP4AQ9BY43 RPL23AP63-201ENST00000498752 471 ntBASIC2.24□□□□□ -2.05
CHMP4AQ9BY43 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC2.24□□□□□ -2.05
CHMP4AQ9BY43 RNU6-237P-201ENST00000515985 71 ntBASIC2.24□□□□□ -2.05
CHMP4AQ9BY43 RNU6-344P-201ENST00000516635 111 ntBASIC2.24□□□□□ -2.05
CHMP4AQ9BY43 AC084364.2-201ENST00000546924 395 ntBASIC2.24□□□□□ -2.05
CHMP4AQ9BY43 MIR4419B-201ENST00000577260 68 ntBASIC2.24□□□□□ -2.05
CHMP4AQ9BY43 FAS-AS1.2-201ENST00000620386 170 ntBASIC2.24□□□□□ -2.05
CHMP4AQ9BY43 AL121890.5-201ENST00000620848 304 ntBASIC2.24□□□□□ -2.05
CHMP4AQ9BY43 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC2.24□□□□□ -2.05
CHMP4AQ9BY43 AC068205.3-201ENST00000636385 468 ntBASIC2.24□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms