Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MTCO2P27-201ENST00000420740 428 ntBASIC1.95□□□□□ -2.1
NKX3-1Q99801 OOSP1P1-201ENST00000423265 274 ntBASIC1.95□□□□□ -2.1
NKX3-1Q99801 MTND3P23-201ENST00000431980 347 ntBASIC1.95□□□□□ -2.1
NKX3-1Q99801 RNU7-152P-201ENST00000458982 64 ntBASIC1.95□□□□□ -2.1
NKX3-1Q99801 U8.22-201ENST00000459141 133 ntBASIC1.95□□□□□ -2.1
NKX3-1Q99801 RN7SKP210-201ENST00000459176 261 ntBASIC1.95□□□□□ -2.1
NKX3-1Q99801 AC007215.1-201ENST00000464893 276 ntBASIC1.95□□□□□ -2.1
NKX3-1Q99801 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.95□□□□□ -2.1
NKX3-1Q99801 RNU6-991P-201ENST00000516168 107 ntBASIC1.95□□□□□ -2.1
NKX3-1Q99801 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.95□□□□□ -2.1
NKX3-1Q99801 AC005899.2-201ENST00000584353 90 ntBASIC1.95□□□□□ -2.1
NKX3-1Q99801 AL050343.2-201ENST00000607338 280 ntBASIC1.95□□□□□ -2.1
NKX3-1Q99801 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.95□□□□□ -2.1
NKX3-1Q99801 MIR6766-201ENST00000622641 72 ntBASIC1.95□□□□□ -2.1
NKX3-1Q99801 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC1.95□□□□□ -2.1
NKX3-1Q99801 RNU6-797P-201ENST00000363101 109 ntBASIC1.94□□□□□ -2.1
NKX3-1Q99801 U8.2-201ENST00000363156 134 ntBASIC1.94□□□□□ -2.1
NKX3-1Q99801 Y_RNA.187-201ENST00000363918 113 ntBASIC1.94□□□□□ -2.1
NKX3-1Q99801 Y_RNA.319-201ENST00000365138 92 ntBASIC1.94□□□□□ -2.1
NKX3-1Q99801 MIR153-2-201ENST00000385225 87 ntBASIC1.94□□□□□ -2.1
NKX3-1Q99801 MIR190B-201ENST00000401119 79 ntBASIC1.94□□□□□ -2.1
NKX3-1Q99801 MIR1262-201ENST00000408276 93 ntBASIC1.94□□□□□ -2.1
NKX3-1Q99801 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.94□□□□□ -2.1
NKX3-1Q99801 AC092423.1-201ENST00000430165 186 ntBASIC1.94□□□□□ -2.1
NKX3-1Q99801 AC004386.2-201ENST00000441858 148 ntBASIC1.94□□□□□ -2.1
NKX3-1Q99801 HMGN2P18-201ENST00000450680 270 ntBASIC1.94□□□□□ -2.1
NKX3-1Q99801 AP000870.1-201ENST00000472927 406 ntBASIC1.94□□□□□ -2.1
NKX3-1Q99801 AC027575.1-201ENST00000481064 460 ntBASIC1.94□□□□□ -2.1
NKX3-1Q99801 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.94□□□□□ -2.1
NKX3-1Q99801 AC105758.1-201ENST00000506038 399 ntBASIC1.94□□□□□ -2.1
NKX3-1Q99801 RNU2-44P-201ENST00000516795 194 ntBASIC1.94□□□□□ -2.1
NKX3-1Q99801 RNU6-699P-201ENST00000517081 110 ntBASIC1.94□□□□□ -2.1
NKX3-1Q99801 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.94□□□□□ -2.1
NKX3-1Q99801 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.94□□□□□ -2.1
NKX3-1Q99801 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.94□□□□□ -2.1
NKX3-1Q99801 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.94□□□□□ -2.1
NKX3-1Q99801 AC025754.2-201ENST00000606491 432 ntBASIC1.94□□□□□ -2.1
NKX3-1Q99801 AC116312.1-201ENST00000606841 314 ntBASIC1.94□□□□□ -2.1
NKX3-1Q99801 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.94□□□□□ -2.1
NKX3-1Q99801 MIR6840-201ENST00000611937 71 ntBASIC1.94□□□□□ -2.1
NKX3-1Q99801 AL590808.1-201ENST00000618696 141 ntBASIC1.94□□□□□ -2.1
NKX3-1Q99801 AC064859.1-201ENST00000624741 174 ntBASIC1.94□□□□□ -2.1
NKX3-1Q99801 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
NKX3-1Q99801 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC1.94□□□□□ -2.1
NKX3-1Q99801 AC016717.2-201ENST00000609089 5141 ntBASIC1.94□□□□□ -2.1
NKX3-1Q99801 SNORA3A-201ENST00000364113 130 ntBASIC1.93□□□□□ -2.1
NKX3-1Q99801 RNU6-234P-201ENST00000365229 104 ntBASIC1.93□□□□□ -2.1
NKX3-1Q99801 XGY1-201ENST00000381172 446 ntBASIC1.93□□□□□ -2.1
NKX3-1Q99801 SNORA6-201ENST00000384033 151 ntBASIC1.93□□□□□ -2.1
NKX3-1Q99801 RNU6-611P-201ENST00000384276 104 ntBASIC1.93□□□□□ -2.1
NKX3-1Q99801 RNU4-53P-201ENST00000410828 140 ntBASIC1.93□□□□□ -2.1
NKX3-1Q99801 AC236972.2-201ENST00000434979 310 ntBASIC1.93□□□□□ -2.1
NKX3-1Q99801 PRELID3BP1-201ENST00000457142 540 ntBASIC1.93□□□□□ -2.1
NKX3-1Q99801 AC104435.1-201ENST00000483483 166 ntBASIC1.93□□□□□ -2.1
NKX3-1Q99801 AC079804.2-201ENST00000490376 200 ntBASIC1.93□□□□□ -2.1
NKX3-1Q99801 AC008549.1-201ENST00000512900 643 ntBASIC1.93□□□□□ -2.1
NKX3-1Q99801 MIR5694-201ENST00000581190 76 ntBASIC1.93□□□□□ -2.1
NKX3-1Q99801 7SK.7-201ENST00000603504 247 ntBASIC1.93□□□□□ -2.1
NKX3-1Q99801 AC100812.1-201ENST00000607622 580 ntBASIC1.93□□□□□ -2.1
NKX3-1Q99801 AC005562.2-201ENST00000618264 111 ntBASIC1.93□□□□□ -2.1
NKX3-1Q99801 AC137590.2-201ENST00000619709 240 ntBASIC1.93□□□□□ -2.1
NKX3-1Q99801 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.93□□□□□ -2.1
NKX3-1Q99801 MTND5P16-201ENST00000460269 1703 ntBASIC1.93□□□□□ -2.1
NKX3-1Q99801 MTND4P29-201ENST00000503122 1372 ntBASIC1.93□□□□□ -2.1
NKX3-1Q99801 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC1.93□□□□□ -2.1
NKX3-1Q99801 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
NKX3-1Q99801 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
NKX3-1Q99801 RNU6-545P-201ENST00000362681 104 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 RNU1-76P-201ENST00000362903 159 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 SNORD115-8-201ENST00000363856 82 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 SNORD115-38-201ENST00000365037 82 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 Y_RNA.358-201ENST00000365491 99 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 RNU6-1040P-201ENST00000383974 107 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 Y_RNA.535-201ENST00000384612 99 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 Y_RNA.557-201ENST00000384680 107 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 MIR10B-201ENST00000385011 110 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 RNA5SP213-201ENST00000391031 106 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 RNU6-700P-201ENST00000391043 107 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 RNU6-159P-201ENST00000391080 106 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 RNU6-1156P-201ENST00000410365 100 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 RNA5SP338-201ENST00000410495 85 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC1.92□□□□□ -2.1
NKX3-1Q99801 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC1.92□□□□□ -2.1
NKX3-1Q99801 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC1.92□□□□□ -2.1
NKX3-1Q99801 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.92□□□□□ -2.1
NKX3-1Q99801 RNU7-14P-201ENST00000459331 62 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 RNU7-87P-201ENST00000459343 62 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 AC093259.1-201ENST00000509755 300 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC1.92□□□□□ -2.1
NKX3-1Q99801 RNU5F-4P-201ENST00000516581 114 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 RNU6-307P-201ENST00000516743 106 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 Y_RNA.706-201ENST00000516933 99 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 RNU6-264P-201ENST00000517134 104 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 NDUFA5P6-201ENST00000542110 379 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 ANP32BP3-201ENST00000559213 706 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 SUB1P3-201ENST00000564581 315 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 AC004584.2-201ENST00000570407 410 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 MIR5006-201ENST00000583027 110 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 AC080078.3-201ENST00000605407 463 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 170.6 ms