Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.34□□□□□ -2.19
CCDC54Q8NEL0 MIR6845-201ENST00000613182 61 ntBASIC1.34□□□□□ -2.19
CCDC54Q8NEL0 AC130454.1-201ENST00000622948 401 ntBASIC1.34□□□□□ -2.19
CCDC54Q8NEL0 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.34□□□□□ -2.2
CCDC54Q8NEL0 CBX3P1-201ENST00000325243 554 ntBASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 RNU6-562P-201ENST00000362731 107 ntBASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 Y_RNA.100-201ENST00000363141 102 ntBASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 SNORA33-201ENST00000363664 130 ntBASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 Y_RNA.402-201ENST00000383972 102 ntBASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 RNU6-968P-201ENST00000384076 107 ntBASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 RNU6-831P-201ENST00000384548 107 ntBASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 RNA5SP494-201ENST00000410653 129 ntBASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 HMGB1P18-201ENST00000438801 619 ntBASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 AC004386.2-201ENST00000441858 148 ntBASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 AC016717.1-201ENST00000448918 286 ntBASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 AC087477.1-201ENST00000465747 340 ntBASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 AC005908.1-201ENST00000468701 347 ntBASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 RPS23P5-201ENST00000495419 428 ntBASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 RNU1-41P-201ENST00000516161 162 ntBASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 RNU1-48P-201ENST00000516400 162 ntBASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 MIR5094-201ENST00000578766 85 ntBASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 AC005786.1-201ENST00000588553 154 ntBASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 AC023043.2-201ENST00000589678 1026 ntBASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 CYP2C61P-201ENST00000604072 290 ntBASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 AL136221.1-201ENST00000621449 509 ntBASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
CCDC54Q8NEL0 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.32□□□□□ -2.2
CCDC54Q8NEL0 RNU6-862P-201ENST00000362804 105 ntBASIC1.32□□□□□ -2.2
CCDC54Q8NEL0 Y_RNA.414-201ENST00000384011 101 ntBASIC1.32□□□□□ -2.2
CCDC54Q8NEL0 AL627390.1-201ENST00000396055 340 ntBASIC1.32□□□□□ -2.2
CCDC54Q8NEL0 SDAD1P3-201ENST00000427380 333 ntBASIC1.32□□□□□ -2.2
CCDC54Q8NEL0 OR2AQ1P-201ENST00000451972 200 ntBASIC1.32□□□□□ -2.2
CCDC54Q8NEL0 APOA2-205ENST00000468465 421 ntTSL 2 BASIC1.32□□□□□ -2.2
CCDC54Q8NEL0 AC114801.2-201ENST00000503825 781 ntBASIC1.32□□□□□ -2.2
CCDC54Q8NEL0 RNA5SP437-201ENST00000517249 129 ntBASIC1.32□□□□□ -2.2
CCDC54Q8NEL0 AK6P2-201ENST00000549020 471 ntBASIC1.32□□□□□ -2.2
CCDC54Q8NEL0 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.32□□□□□ -2.2
CCDC54Q8NEL0 RMST_6.1-201ENST00000611980 203 ntBASIC1.32□□□□□ -2.2
CCDC54Q8NEL0 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.32□□□□□ -2.2
CCDC54Q8NEL0 AC005562.2-201ENST00000618264 111 ntBASIC1.32□□□□□ -2.2
CCDC54Q8NEL0 SCARNA4-201ENST00000629045 128 ntBASIC1.32□□□□□ -2.2
CCDC54Q8NEL0 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
CCDC54Q8NEL0 RNU6-438P-201ENST00000365561 103 ntBASIC1.31□□□□□ -2.2
CCDC54Q8NEL0 RNU6-877P-201ENST00000383868 107 ntBASIC1.31□□□□□ -2.2
CCDC54Q8NEL0 SNORD116-11-201ENST00000383882 92 ntBASIC1.31□□□□□ -2.2
CCDC54Q8NEL0 RNU6-128P-201ENST00000383976 107 ntBASIC1.31□□□□□ -2.2
CCDC54Q8NEL0 Y_RNA.530-201ENST00000384587 101 ntBASIC1.31□□□□□ -2.2
CCDC54Q8NEL0 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.31□□□□□ -2.2
CCDC54Q8NEL0 MIR1304-201ENST00000408243 91 ntBASIC1.31□□□□□ -2.2
CCDC54Q8NEL0 MIR1283-1-201ENST00000408494 87 ntBASIC1.31□□□□□ -2.2
CCDC54Q8NEL0 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.31□□□□□ -2.2
CCDC54Q8NEL0 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.31□□□□□ -2.2
CCDC54Q8NEL0 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.31□□□□□ -2.2
CCDC54Q8NEL0 AC007677.1-201ENST00000445757 515 ntBASIC1.31□□□□□ -2.2
CCDC54Q8NEL0 TRBVA-201ENST00000498804 316 ntBASIC1.31□□□□□ -2.2
CCDC54Q8NEL0 MTCO2P30-201ENST00000503662 364 ntBASIC1.31□□□□□ -2.2
CCDC54Q8NEL0 AC011352.1-201ENST00000512300 793 ntBASIC1.31□□□□□ -2.2
CCDC54Q8NEL0 RNU6-856P-201ENST00000516959 98 ntBASIC1.31□□□□□ -2.2
CCDC54Q8NEL0 RNU6-1314P-201ENST00000517139 104 ntBASIC1.31□□□□□ -2.2
CCDC54Q8NEL0 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.31□□□□□ -2.2
CCDC54Q8NEL0 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.31□□□□□ -2.2
CCDC54Q8NEL0 SNORD53B-201ENST00000577887 78 ntBASIC1.31□□□□□ -2.2
CCDC54Q8NEL0 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.31□□□□□ -2.2
CCDC54Q8NEL0 AC011494.1-201ENST00000596454 237 ntBASIC1.31□□□□□ -2.2
CCDC54Q8NEL0 PRR13P7-201ENST00000605538 430 ntBASIC1.31□□□□□ -2.2
CCDC54Q8NEL0 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.31□□□□□ -2.2
CCDC54Q8NEL0 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.31□□□□□ -2.2
CCDC54Q8NEL0 AC095038.3-201ENST00000634439 195 ntBASIC1.31□□□□□ -2.2
CCDC54Q8NEL0 MIR3688-2-201ENST00000636963 87 ntBASIC1.31□□□□□ -2.2
CCDC54Q8NEL0 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 AC233981.2-201ENST00000611524 1614 ntBASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 AL159152.1-201ENST00000635019 2587 ntBASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 RNU6-1059P-201ENST00000363752 98 ntBASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 RNU1-42P-201ENST00000364033 160 ntBASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 RNU4-12P-201ENST00000365233 139 ntBASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 RNU6-306P-201ENST00000384617 107 ntBASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 MIR517A-201ENST00000385001 87 ntBASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 MIR23A-201ENST00000385245 73 ntBASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 MIR548B-201ENST00000385247 97 ntBASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 MIR320A-201ENST00000385302 82 ntBASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 RNU6-1106P-201ENST00000390845 107 ntBASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 SNORD115-47-201ENST00000391226 86 ntBASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 AC016909.1-201ENST00000415916 166 ntBASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 Z82205.1-201ENST00000428456 297 ntBASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 AL445305.1-201ENST00000432577 575 ntBASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 AL513124.1-201ENST00000450410 614 ntBASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 RPS29P23-201ENST00000458635 123 ntBASIC1.3□□□□□ -2.2
CCDC54Q8NEL0 RPL30P10-201ENST00000488148 337 ntBASIC1.3□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms