Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC009994.1-201ENST00000606889 253 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 AC064836.2-201ENST00000609491 462 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 AL138726.1-201ENST00000614873 333 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 AC092268.1-201ENST00000342691 405 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-845P-201ENST00000362578 103 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 Y_RNA.166-201ENST00000363730 102 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 Y_RNA.212-201ENST00000364177 102 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 SNORD81.2-201ENST00000365153 76 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-438P-201ENST00000365561 103 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-997P-201ENST00000384725 107 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 RNU2-2P-201ENST00000410396 191 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 AL590632.1-201ENST00000424289 371 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 AMD1P1-201ENST00000457220 922 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 RNU7-138P-201ENST00000459479 64 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 AC104564.1-201ENST00000493028 407 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 AC092436.3-201ENST00000511788 257 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 AC107393.1-201ENST00000512403 346 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-256P-201ENST00000516747 97 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 SUMO2P18-201ENST00000518873 252 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 MIR3923-201ENST00000579521 83 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 AC023043.2-201ENST00000589678 1026 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 RPL17P51-201ENST00000605218 238 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 LARP7P1-201ENST00000605576 316 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 U2.15-201ENST00000611544 191 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 U2.16-201ENST00000613119 191 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 U2.12-201ENST00000613778 191 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 U2.20-201ENST00000613956 192 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 U2.9-201ENST00000615427 191 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 U2.11-201ENST00000616345 191 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 U2.2-201ENST00000616535 191 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 U2.3-201ENST00000617785 191 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 U2.19-201ENST00000618602 191 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 RNU2-1-201ENST00000618664 191 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 U2.6-201ENST00000619225 191 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 U2.5-201ENST00000619465 191 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 U2.10-201ENST00000620268 191 ntBASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.64□□□□□ -2.15
ZNF540Q8NDQ6 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-428P-201ENST00000362942 107 ntBASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 SNORD113-7-201ENST00000363762 77 ntBASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 SNORD114-6-201ENST00000364393 72 ntBASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 Y_RNA.339-201ENST00000365325 102 ntBASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-767P-201ENST00000384132 107 ntBASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-43P-201ENST00000384302 107 ntBASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 Y_RNA.474-201ENST00000384341 102 ntBASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 SNORA40.18-201ENST00000391200 128 ntBASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 RNU1-78P-201ENST00000391248 165 ntBASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 MIR1267-201ENST00000408723 78 ntBASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 RN7SKP61-201ENST00000410642 295 ntBASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 AL590135.1-201ENST00000422215 156 ntBASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 AC019205.3-201ENST00000424573 156 ntBASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 AL353572.1-201ENST00000442490 417 ntBASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 AC016700.2-201ENST00000446011 156 ntBASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 MTND1P11-201ENST00000456661 876 ntBASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 AC010409.1-201ENST00000487382 476 ntBASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 AC015911.1-201ENST00000495111 156 ntBASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 AC114801.2-201ENST00000503825 781 ntBASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 RPL39P5-202ENST00000512505 151 ntBASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-875P-201ENST00000516488 106 ntBASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-567P-201ENST00000516746 107 ntBASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-323P-201ENST00000521915 107 ntBASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 AC025423.5-201ENST00000550230 219 ntBASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 MIR3941-201ENST00000582572 103 ntBASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 AC005730.3-201ENST00000583067 366 ntBASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-85P-201ENST00000605989 107 ntBASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 AC009033.1-201ENST00000624279 431 ntBASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
ZNF540Q8NDQ6 RNA5SP363-201ENST00000365072 115 ntBASIC1.62□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-1329P-201ENST00000365664 107 ntBASIC1.62□□□□□ -2.15
ZNF540Q8NDQ6 SNORA32.2-201ENST00000384049 122 ntBASIC1.62□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-95P-201ENST00000384697 107 ntBASIC1.62□□□□□ -2.15
ZNF540Q8NDQ6 MIR450B-201ENST00000401182 78 ntBASIC1.62□□□□□ -2.15
ZNF540Q8NDQ6 MTND3P8-201ENST00000412909 339 ntBASIC1.62□□□□□ -2.15
ZNF540Q8NDQ6 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.62□□□□□ -2.15
ZNF540Q8NDQ6 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
ZNF540Q8NDQ6 AC098614.3-201ENST00000438957 440 ntBASIC1.62□□□□□ -2.15
ZNF540Q8NDQ6 AL359672.1-201ENST00000442302 409 ntBASIC1.62□□□□□ -2.15
ZNF540Q8NDQ6 AC245517.4-201ENST00000448601 281 ntBASIC1.62□□□□□ -2.15
ZNF540Q8NDQ6 MTND1P17-201ENST00000448961 204 ntBASIC1.62□□□□□ -2.15
ZNF540Q8NDQ6 SNRPGP7-201ENST00000469016 106 ntBASIC1.62□□□□□ -2.15
ZNF540Q8NDQ6 AC008628.2-201ENST00000502605 298 ntBASIC1.62□□□□□ -2.15
ZNF540Q8NDQ6 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.62□□□□□ -2.15
ZNF540Q8NDQ6 AC096745.1-201ENST00000509945 370 ntBASIC1.62□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 121.5 ms