Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RNU6-271P-201ENST00000363858 105 ntBASIC1.55□□□□□ -2.16
HDDC3Q8N4P3 RNA5SP363-201ENST00000365072 115 ntBASIC1.55□□□□□ -2.16
HDDC3Q8N4P3 Y_RNA.378-201ENST00000365652 113 ntBASIC1.55□□□□□ -2.16
HDDC3Q8N4P3 RNU6-1286P-201ENST00000383871 107 ntBASIC1.55□□□□□ -2.16
HDDC3Q8N4P3 RNU6-214P-201ENST00000384130 107 ntBASIC1.55□□□□□ -2.16
HDDC3Q8N4P3 RNU6-997P-201ENST00000384725 107 ntBASIC1.55□□□□□ -2.16
HDDC3Q8N4P3 AF228730.1-201ENST00000397972 663 ntBASIC1.55□□□□□ -2.16
HDDC3Q8N4P3 MIR1323-201ENST00000408090 73 ntBASIC1.55□□□□□ -2.16
HDDC3Q8N4P3 AL663109.1-201ENST00000411498 844 ntBASIC1.55□□□□□ -2.16
HDDC3Q8N4P3 TIMM9P3-201ENST00000428659 274 ntBASIC1.55□□□□□ -2.16
HDDC3Q8N4P3 MRPS10P2-201ENST00000431226 381 ntBASIC1.55□□□□□ -2.16
HDDC3Q8N4P3 AC004386.2-201ENST00000441858 148 ntBASIC1.55□□□□□ -2.16
HDDC3Q8N4P3 AL359672.1-201ENST00000442302 409 ntBASIC1.55□□□□□ -2.16
HDDC3Q8N4P3 Y_RNA.654-201ENST00000497848 106 ntBASIC1.55□□□□□ -2.16
HDDC3Q8N4P3 AC091133.4-201ENST00000511142 308 ntBASIC1.55□□□□□ -2.16
HDDC3Q8N4P3 AC067942.3-201ENST00000512025 362 ntBASIC1.55□□□□□ -2.16
HDDC3Q8N4P3 AC084364.2-201ENST00000546924 395 ntBASIC1.55□□□□□ -2.16
HDDC3Q8N4P3 AC016727.2-201ENST00000603988 621 ntBASIC1.55□□□□□ -2.16
HDDC3Q8N4P3 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.55□□□□□ -2.16
HDDC3Q8N4P3 TCL6_2.1-201ENST00000615162 119 ntBASIC1.55□□□□□ -2.16
HDDC3Q8N4P3 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.54□□□□□ -2.16
HDDC3Q8N4P3 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
HDDC3Q8N4P3 RNU6-1322P-201ENST00000364309 107 ntBASIC1.54□□□□□ -2.16
HDDC3Q8N4P3 RNU6-38P-201ENST00000384085 107 ntBASIC1.54□□□□□ -2.16
HDDC3Q8N4P3 RNU6-933P-201ENST00000384424 107 ntBASIC1.54□□□□□ -2.16
HDDC3Q8N4P3 RPL21P1-201ENST00000399532 476 ntBASIC1.54□□□□□ -2.16
HDDC3Q8N4P3 C8orf59P1-201ENST00000429930 303 ntBASIC1.54□□□□□ -2.16
HDDC3Q8N4P3 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.54□□□□□ -2.16
HDDC3Q8N4P3 AMD1P1-201ENST00000457220 922 ntBASIC1.54□□□□□ -2.16
HDDC3Q8N4P3 RNU1-123P-201ENST00000458950 160 ntBASIC1.54□□□□□ -2.16
HDDC3Q8N4P3 AC083798.1-201ENST00000472671 131 ntBASIC1.54□□□□□ -2.16
HDDC3Q8N4P3 AC011406.1-201ENST00000512440 370 ntBASIC1.54□□□□□ -2.16
HDDC3Q8N4P3 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC1.54□□□□□ -2.16
HDDC3Q8N4P3 NTS-203ENST00000551529 801 ntTSL 3 BASIC1.54□□□□□ -2.16
HDDC3Q8N4P3 SCOCP1-201ENST00000554676 349 ntBASIC1.54□□□□□ -2.16
HDDC3Q8N4P3 AL118558.2-201ENST00000556294 238 ntBASIC1.54□□□□□ -2.16
HDDC3Q8N4P3 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC1.54□□□□□ -2.16
HDDC3Q8N4P3 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC1.54□□□□□ -2.16
HDDC3Q8N4P3 SNORA77B-201ENST00000578179 125 ntBASIC1.54□□□□□ -2.16
HDDC3Q8N4P3 MIR5692C1-201ENST00000585309 91 ntBASIC1.54□□□□□ -2.16
HDDC3Q8N4P3 AP000907.4-201ENST00000604143 237 ntBASIC1.54□□□□□ -2.16
HDDC3Q8N4P3 CTHRC1P1-201ENST00000605383 469 ntBASIC1.54□□□□□ -2.16
HDDC3Q8N4P3 AP001330.5-201ENST00000607176 411 ntBASIC1.54□□□□□ -2.16
HDDC3Q8N4P3 AC017083.3-201ENST00000609955 700 ntBASIC1.54□□□□□ -2.16
HDDC3Q8N4P3 AC091895.1-201ENST00000624494 256 ntBASIC1.54□□□□□ -2.16
HDDC3Q8N4P3 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
HDDC3Q8N4P3 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.53□□□□□ -2.16
HDDC3Q8N4P3 SNORA69-201ENST00000383895 132 ntBASIC1.53□□□□□ -2.16
HDDC3Q8N4P3 Y_RNA.481-201ENST00000384373 102 ntBASIC1.53□□□□□ -2.16
HDDC3Q8N4P3 RNY3P9-201ENST00000384727 106 ntBASIC1.53□□□□□ -2.16
HDDC3Q8N4P3 MIR521-1-201ENST00000384902 87 ntBASIC1.53□□□□□ -2.16
HDDC3Q8N4P3 MIR548B-201ENST00000385247 97 ntBASIC1.53□□□□□ -2.16
HDDC3Q8N4P3 RPS26P42-201ENST00000413485 326 ntBASIC1.53□□□□□ -2.16
HDDC3Q8N4P3 MTCO2P16-201ENST00000436962 677 ntBASIC1.53□□□□□ -2.16
HDDC3Q8N4P3 AC074290.1-201ENST00000448883 135 ntBASIC1.53□□□□□ -2.16
HDDC3Q8N4P3 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.53□□□□□ -2.16
HDDC3Q8N4P3 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC1.53□□□□□ -2.16
HDDC3Q8N4P3 AC104383.1-201ENST00000530297 370 ntBASIC1.53□□□□□ -2.16
HDDC3Q8N4P3 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC1.53□□□□□ -2.16
HDDC3Q8N4P3 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.53□□□□□ -2.16
HDDC3Q8N4P3 AL157687.1-201ENST00000554853 619 ntBASIC1.53□□□□□ -2.16
HDDC3Q8N4P3 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.53□□□□□ -2.16
HDDC3Q8N4P3 RN7SKP299-201ENST00000606679 301 ntBASIC1.53□□□□□ -2.16
HDDC3Q8N4P3 AC092807.2-201ENST00000609367 243 ntBASIC1.53□□□□□ -2.16
HDDC3Q8N4P3 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.53□□□□□ -2.16
HDDC3Q8N4P3 AC126177.8-201ENST00000618339 1015 ntBASIC1.53□□□□□ -2.16
HDDC3Q8N4P3 Y_RNA.409-201ENST00000383990 98 ntBASIC1.52□□□□□ -2.17
HDDC3Q8N4P3 AC060773.1-201ENST00000421698 310 ntBASIC1.52□□□□□ -2.17
HDDC3Q8N4P3 CST2P1-201ENST00000425770 87 ntBASIC1.52□□□□□ -2.17
HDDC3Q8N4P3 MTATP6P17-201ENST00000431030 672 ntBASIC1.52□□□□□ -2.17
HDDC3Q8N4P3 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC1.52□□□□□ -2.17
HDDC3Q8N4P3 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC1.52□□□□□ -2.17
HDDC3Q8N4P3 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC1.52□□□□□ -2.17
HDDC3Q8N4P3 SRRM1P2-201ENST00000464531 1192 ntBASIC1.52□□□□□ -2.17
HDDC3Q8N4P3 RPS26P55-201ENST00000471178 356 ntBASIC1.52□□□□□ -2.17
HDDC3Q8N4P3 HMGN2P9-201ENST00000476875 229 ntBASIC1.52□□□□□ -2.17
HDDC3Q8N4P3 AC091885.1-201ENST00000506658 268 ntBASIC1.52□□□□□ -2.17
HDDC3Q8N4P3 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.52□□□□□ -2.17
HDDC3Q8N4P3 RNU6-948P-201ENST00000516374 107 ntBASIC1.52□□□□□ -2.17
HDDC3Q8N4P3 RNA5SP384-201ENST00000516615 116 ntBASIC1.52□□□□□ -2.17
HDDC3Q8N4P3 AC026407.1-201ENST00000518369 204 ntBASIC1.52□□□□□ -2.17
HDDC3Q8N4P3 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
HDDC3Q8N4P3 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.52□□□□□ -2.17
HDDC3Q8N4P3 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.52□□□□□ -2.17
HDDC3Q8N4P3 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC1.52□□□□□ -2.17
HDDC3Q8N4P3 MIR3611-201ENST00000584484 83 ntBASIC1.52□□□□□ -2.17
HDDC3Q8N4P3 MIR6078-201ENST00000611069 100 ntBASIC1.52□□□□□ -2.17
HDDC3Q8N4P3 AL353770.2-201ENST00000620024 78 ntBASIC1.52□□□□□ -2.17
HDDC3Q8N4P3 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC1.52□□□□□ -2.17
HDDC3Q8N4P3 BX322639.1-202ENST00000423987 2213 ntBASIC1.52□□□□□ -2.17
HDDC3Q8N4P3 AL161722.3-201ENST00000605789 2983 ntBASIC1.52□□□□□ -2.17
HDDC3Q8N4P3 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.52□□□□□ -2.17
HDDC3Q8N4P3 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.51□□□□□ -2.17
HDDC3Q8N4P3 RNU5B-2P-201ENST00000363036 113 ntBASIC1.51□□□□□ -2.17
HDDC3Q8N4P3 MIR1304-201ENST00000408243 91 ntBASIC1.51□□□□□ -2.17
HDDC3Q8N4P3 MIR320B2-201ENST00000408479 138 ntBASIC1.51□□□□□ -2.17
HDDC3Q8N4P3 RNU6-325P-201ENST00000411132 105 ntBASIC1.51□□□□□ -2.17
HDDC3Q8N4P3 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.51□□□□□ -2.17
HDDC3Q8N4P3 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.51□□□□□ -2.17
HDDC3Q8N4P3 RNU6-1208P-201ENST00000459588 107 ntBASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 143.1 ms