Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 Y_RNA.394-201ENST00000383942 103 ntBASIC2.55□□□□□ -2
SYNE3Q6ZMZ3 MIR32-201ENST00000384965 70 ntBASIC2.55□□□□□ -2
SYNE3Q6ZMZ3 RNU6-700P-201ENST00000391043 107 ntBASIC2.55□□□□□ -2
SYNE3Q6ZMZ3 AL078595.1-201ENST00000404458 226 ntBASIC2.55□□□□□ -2
SYNE3Q6ZMZ3 SNORA11.4-201ENST00000408823 129 ntBASIC2.55□□□□□ -2
SYNE3Q6ZMZ3 MTND5P6-201ENST00000422338 1798 ntBASIC2.55□□□□□ -2
SYNE3Q6ZMZ3 AC018865.2-201ENST00000423631 129 ntBASIC2.55□□□□□ -2
SYNE3Q6ZMZ3 AL137792.2-201ENST00000443484 235 ntBASIC2.55□□□□□ -2
SYNE3Q6ZMZ3 AC132942.1-201ENST00000486753 483 ntBASIC2.55□□□□□ -2
SYNE3Q6ZMZ3 RNU6-1170P-201ENST00000515974 106 ntBASIC2.55□□□□□ -2
SYNE3Q6ZMZ3 RNU6-120P-201ENST00000516077 103 ntBASIC2.55□□□□□ -2
SYNE3Q6ZMZ3 RNA5SP54-201ENST00000516951 92 ntBASIC2.55□□□□□ -2
SYNE3Q6ZMZ3 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC2.55□□□□□ -2
SYNE3Q6ZMZ3 CBX3P7-201ENST00000532876 502 ntBASIC2.55□□□□□ -2
SYNE3Q6ZMZ3 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC2.55□□□□□ -2
SYNE3Q6ZMZ3 MIR4298-201ENST00000584380 73 ntBASIC2.55□□□□□ -2
SYNE3Q6ZMZ3 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.55□□□□□ -2
SYNE3Q6ZMZ3 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.55□□□□□ -2
SYNE3Q6ZMZ3 Y_RNA.5-201ENST00000362334 102 ntBASIC2.54□□□□□ -2
SYNE3Q6ZMZ3 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.54□□□□□ -2
SYNE3Q6ZMZ3 SNORA12-201ENST00000391162 147 ntBASIC2.54□□□□□ -2
SYNE3Q6ZMZ3 MIR190B-201ENST00000401119 79 ntBASIC2.54□□□□□ -2
SYNE3Q6ZMZ3 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.54□□□□□ -2
SYNE3Q6ZMZ3 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.54□□□□□ -2
SYNE3Q6ZMZ3 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.54□□□□□ -2
SYNE3Q6ZMZ3 AC099799.1-201ENST00000439809 192 ntBASIC2.54□□□□□ -2
SYNE3Q6ZMZ3 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.54□□□□□ -2
SYNE3Q6ZMZ3 RNU6-1198P-201ENST00000516904 67 ntBASIC2.54□□□□□ -2
SYNE3Q6ZMZ3 RNU6-264P-201ENST00000517134 104 ntBASIC2.54□□□□□ -2
SYNE3Q6ZMZ3 RNU6-58P-201ENST00000517143 103 ntBASIC2.54□□□□□ -2
SYNE3Q6ZMZ3 DEFB131C-201ENST00000528817 165 ntBASIC2.54□□□□□ -2
SYNE3Q6ZMZ3 AC022616.8-201ENST00000533569 253 ntBASIC2.54□□□□□ -2
SYNE3Q6ZMZ3 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.54□□□□□ -2
SYNE3Q6ZMZ3 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC2.54□□□□□ -2
SYNE3Q6ZMZ3 AC016727.2-201ENST00000603988 621 ntBASIC2.54□□□□□ -2
SYNE3Q6ZMZ3 AL355802.3-201ENST00000607571 545 ntBASIC2.54□□□□□ -2
SYNE3Q6ZMZ3 AL132822.1-201ENST00000617063 513 ntBASIC2.54□□□□□ -2
SYNE3Q6ZMZ3 AC064859.1-201ENST00000624741 174 ntBASIC2.54□□□□□ -2
SYNE3Q6ZMZ3 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
SYNE3Q6ZMZ3 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.53□□□□□ -2
SYNE3Q6ZMZ3 RNA5SP126-201ENST00000365092 109 ntBASIC2.53□□□□□ -2
SYNE3Q6ZMZ3 Y_RNA.319-201ENST00000365138 92 ntBASIC2.53□□□□□ -2
SYNE3Q6ZMZ3 RNU6-245P-201ENST00000384020 107 ntBASIC2.53□□□□□ -2
SYNE3Q6ZMZ3 MIR561-201ENST00000385216 97 ntBASIC2.53□□□□□ -2
SYNE3Q6ZMZ3 AL355497.1-201ENST00000406262 551 ntBASIC2.53□□□□□ -2
SYNE3Q6ZMZ3 RNA5SP425-201ENST00000410336 112 ntBASIC2.53□□□□□ -2
SYNE3Q6ZMZ3 Z98742.3-201ENST00000418637 326 ntBASIC2.53□□□□□ -2
SYNE3Q6ZMZ3 AC007098.1-201ENST00000420122 367 ntBASIC2.53□□□□□ -2
SYNE3Q6ZMZ3 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.53□□□□□ -2
SYNE3Q6ZMZ3 UBE2V1P7-201ENST00000446395 340 ntBASIC2.53□□□□□ -2
SYNE3Q6ZMZ3 AC027575.1-201ENST00000481064 460 ntBASIC2.53□□□□□ -2
SYNE3Q6ZMZ3 SCARNA16.3-201ENST00000516595 184 ntBASIC2.53□□□□□ -2
SYNE3Q6ZMZ3 Y_RNA.706-201ENST00000516933 99 ntBASIC2.53□□□□□ -2
SYNE3Q6ZMZ3 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.53□□□□□ -2
SYNE3Q6ZMZ3 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.53□□□□□ -2
SYNE3Q6ZMZ3 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
SYNE3Q6ZMZ3 AC131280.1-202ENST00000624067 4211 ntBASIC2.52□□□□□ -2.01
SYNE3Q6ZMZ3 RNU6-99P-201ENST00000364721 107 ntBASIC2.52□□□□□ -2.01
SYNE3Q6ZMZ3 RNU1-115P-201ENST00000365329 160 ntBASIC2.52□□□□□ -2.01
SYNE3Q6ZMZ3 Y_RNA.364-201ENST00000365532 101 ntBASIC2.52□□□□□ -2.01
SYNE3Q6ZMZ3 Y_RNA.496-201ENST00000384444 101 ntBASIC2.52□□□□□ -2.01
SYNE3Q6ZMZ3 MIR487A-201ENST00000385009 80 ntBASIC2.52□□□□□ -2.01
SYNE3Q6ZMZ3 RNU6-159P-201ENST00000391080 106 ntBASIC2.52□□□□□ -2.01
SYNE3Q6ZMZ3 RNU6-1093P-201ENST00000391194 107 ntBASIC2.52□□□□□ -2.01
SYNE3Q6ZMZ3 MRPS18CP6-201ENST00000423587 223 ntBASIC2.52□□□□□ -2.01
SYNE3Q6ZMZ3 MIR2053-201ENST00000459295 91 ntBASIC2.52□□□□□ -2.01
SYNE3Q6ZMZ3 ANXA2P1-201ENST00000505539 926 ntBASIC2.52□□□□□ -2.01
SYNE3Q6ZMZ3 RNU6-1114P-201ENST00000516022 107 ntBASIC2.52□□□□□ -2.01
SYNE3Q6ZMZ3 NDUFA5P6-201ENST00000542110 379 ntBASIC2.52□□□□□ -2.01
SYNE3Q6ZMZ3 AL355297.2-201ENST00000604792 129 ntBASIC2.52□□□□□ -2.01
SYNE3Q6ZMZ3 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC2.52□□□□□ -2.01
SYNE3Q6ZMZ3 AC087588.2-201ENST00000617667 426 ntBASIC2.52□□□□□ -2.01
SYNE3Q6ZMZ3 AC090971.5-201ENST00000621102 293 ntBASIC2.52□□□□□ -2.01
SYNE3Q6ZMZ3 uc_338.22-201ENST00000622722 187 ntBASIC2.52□□□□□ -2.01
SYNE3Q6ZMZ3 MPP6-209ENST00000625307 126 ntTSL 5 BASIC2.52□□□□□ -2.01
SYNE3Q6ZMZ3 AL596028.1-201ENST00000326971 197 ntBASIC2.51□□□□□ -2.01
SYNE3Q6ZMZ3 RNU6-546P-201ENST00000383991 107 ntBASIC2.51□□□□□ -2.01
SYNE3Q6ZMZ3 MIR10B-201ENST00000385011 110 ntBASIC2.51□□□□□ -2.01
SYNE3Q6ZMZ3 SNORA3.2-201ENST00000408221 125 ntBASIC2.51□□□□□ -2.01
SYNE3Q6ZMZ3 MIR1294-201ENST00000408503 142 ntBASIC2.51□□□□□ -2.01
SYNE3Q6ZMZ3 RNU6-1156P-201ENST00000410365 100 ntBASIC2.51□□□□□ -2.01
SYNE3Q6ZMZ3 AL354751.2-201ENST00000415471 210 ntBASIC2.51□□□□□ -2.01
SYNE3Q6ZMZ3 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.51□□□□□ -2.01
SYNE3Q6ZMZ3 RPL23AP50-201ENST00000434149 455 ntBASIC2.51□□□□□ -2.01
SYNE3Q6ZMZ3 MTCYBP6-201ENST00000441810 138 ntBASIC2.51□□□□□ -2.01
SYNE3Q6ZMZ3 AL035666.1-201ENST00000446195 348 ntBASIC2.51□□□□□ -2.01
SYNE3Q6ZMZ3 TOMM22P6-201ENST00000465035 409 ntBASIC2.51□□□□□ -2.01
SYNE3Q6ZMZ3 RNU7-4P-201ENST00000516961 62 ntBASIC2.51□□□□□ -2.01
SYNE3Q6ZMZ3 RNU6-699P-201ENST00000517081 110 ntBASIC2.51□□□□□ -2.01
SYNE3Q6ZMZ3 AC091544.4-201ENST00000555268 342 ntBASIC2.51□□□□□ -2.01
SYNE3Q6ZMZ3 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC2.51□□□□□ -2.01
SYNE3Q6ZMZ3 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.51□□□□□ -2.01
SYNE3Q6ZMZ3 MIR1273D-201ENST00000577266 86 ntBASIC2.51□□□□□ -2.01
SYNE3Q6ZMZ3 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.51□□□□□ -2.01
SYNE3Q6ZMZ3 AC138305.3-201ENST00000624988 240 ntBASIC2.51□□□□□ -2.01
SYNE3Q6ZMZ3 RNU6-234P-201ENST00000365229 104 ntBASIC2.5□□□□□ -2.01
SYNE3Q6ZMZ3 SNORA25B-201ENST00000365507 128 ntBASIC2.5□□□□□ -2.01
SYNE3Q6ZMZ3 RNU6-26P-201ENST00000383985 107 ntBASIC2.5□□□□□ -2.01
SYNE3Q6ZMZ3 RNU6-611P-201ENST00000384276 104 ntBASIC2.5□□□□□ -2.01
SYNE3Q6ZMZ3 RNU2-32P-201ENST00000411193 191 ntBASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms