Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC-0.26□□□□□ -2.45
USF3Q68DE3 RNU6-817P-201ENST00000391083 104 ntBASIC-0.26□□□□□ -2.45
USF3Q68DE3 MIR938-201ENST00000401216 83 ntBASIC-0.26□□□□□ -2.45
USF3Q68DE3 AC007969.2-201ENST00000441891 191 ntBASIC-0.26□□□□□ -2.45
USF3Q68DE3 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC-0.26□□□□□ -2.45
USF3Q68DE3 AC074198.2-201ENST00000508153 258 ntBASIC-0.26□□□□□ -2.45
USF3Q68DE3 DEFB108A-201ENST00000530110 222 ntBASIC-0.26□□□□□ -2.45
USF3Q68DE3 AL391840.1-201ENST00000571144 367 ntBASIC-0.26□□□□□ -2.45
USF3Q68DE3 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC-0.26□□□□□ -2.45
USF3Q68DE3 AL606834.3-201ENST00000602615 496 ntBASIC-0.26□□□□□ -2.45
USF3Q68DE3 AL136317.1-201ENST00000612653 226 ntBASIC-0.26□□□□□ -2.45
USF3Q68DE3 AL359075.3-201ENST00000613288 217 ntBASIC-0.26□□□□□ -2.45
USF3Q68DE3 SNORD98-201ENST00000636377 67 ntBASIC-0.26□□□□□ -2.45
USF3Q68DE3 AC132825.7-201ENST00000638744 335 ntBASIC-0.26□□□□□ -2.45
USF3Q68DE3 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC-0.27□□□□□ -2.45
USF3Q68DE3 SNORD113.3-201ENST00000364630 78 ntBASIC-0.27□□□□□ -2.45
USF3Q68DE3 RNU6-744P-201ENST00000365557 107 ntBASIC-0.27□□□□□ -2.45
USF3Q68DE3 RNU6-1316P-201ENST00000384242 108 ntBASIC-0.27□□□□□ -2.45
USF3Q68DE3 RNU6-925P-201ENST00000384629 104 ntBASIC-0.27□□□□□ -2.45
USF3Q68DE3 MIR544A-201ENST00000384855 91 ntBASIC-0.27□□□□□ -2.45
USF3Q68DE3 MIR153-2-201ENST00000385225 87 ntBASIC-0.27□□□□□ -2.45
USF3Q68DE3 RNU6ATAC25P-201ENST00000408798 117 ntBASIC-0.27□□□□□ -2.45
USF3Q68DE3 AC244670.1-201ENST00000436879 112 ntBASIC-0.27□□□□□ -2.45
USF3Q68DE3 RPL18AP17-201ENST00000455326 198 ntBASIC-0.27□□□□□ -2.45
USF3Q68DE3 RPL39P36-201ENST00000490784 156 ntBASIC-0.27□□□□□ -2.45
USF3Q68DE3 AC074133.1-201ENST00000515696 183 ntBASIC-0.27□□□□□ -2.45
USF3Q68DE3 RNU6-914P-201ENST00000516749 109 ntBASIC-0.27□□□□□ -2.45
USF3Q68DE3 Y_RNA.700-201ENST00000516806 100 ntBASIC-0.27□□□□□ -2.45
USF3Q68DE3 OR8K2P-201ENST00000524645 927 ntBASIC-0.27□□□□□ -2.45
USF3Q68DE3 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC-0.27□□□□□ -2.45
USF3Q68DE3 AC174048.1-201ENST00000603389 144 ntBASIC-0.27□□□□□ -2.45
USF3Q68DE3 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC-0.27□□□□□ -2.45
USF3Q68DE3 uc_338.16-201ENST00000621804 95 ntBASIC-0.27□□□□□ -2.45
USF3Q68DE3 RNU6-353P-201ENST00000364266 108 ntBASIC-0.28□□□□□ -2.45
USF3Q68DE3 RNU4-76P-201ENST00000364509 141 ntBASIC-0.28□□□□□ -2.45
USF3Q68DE3 Y_RNA.324-201ENST00000365165 102 ntBASIC-0.28□□□□□ -2.45
USF3Q68DE3 SNORD49B-201ENST00000365172 72 ntBASIC-0.28□□□□□ -2.45
USF3Q68DE3 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC-0.28□□□□□ -2.45
USF3Q68DE3 RNU6-549P-201ENST00000384433 107 ntBASIC-0.28□□□□□ -2.45
USF3Q68DE3 SNORA2B-201ENST00000384583 137 ntBASIC-0.28□□□□□ -2.45
USF3Q68DE3 SNORA26.3-201ENST00000391119 136 ntBASIC-0.28□□□□□ -2.45
USF3Q68DE3 AC007000.2-201ENST00000442564 487 ntBASIC-0.28□□□□□ -2.45
USF3Q68DE3 ELOCP24-201ENST00000456370 334 ntBASIC-0.28□□□□□ -2.45
USF3Q68DE3 AC093899.1-201ENST00000457984 376 ntBASIC-0.28□□□□□ -2.45
USF3Q68DE3 RNU7-140P-201ENST00000459546 60 ntBASIC-0.28□□□□□ -2.45
USF3Q68DE3 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC-0.28□□□□□ -2.45
USF3Q68DE3 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC-0.28□□□□□ -2.45
USF3Q68DE3 MIR4723-201ENST00000585070 81 ntBASIC-0.28□□□□□ -2.45
USF3Q68DE3 RNU6-562P-201ENST00000362731 107 ntBASIC-0.28□□□□□ -2.45
USF3Q68DE3 SNORA32.1-201ENST00000364514 115 ntBASIC-0.28□□□□□ -2.45
USF3Q68DE3 Y_RNA.362-201ENST00000365518 110 ntBASIC-0.28□□□□□ -2.45
USF3Q68DE3 RNU6-48P-201ENST00000384161 107 ntBASIC-0.28□□□□□ -2.45
USF3Q68DE3 MIR301A-201ENST00000385261 86 ntBASIC-0.28□□□□□ -2.45
USF3Q68DE3 SNORD41-201ENST00000386967 70 ntBASIC-0.28□□□□□ -2.45
USF3Q68DE3 RNA5SP451-201ENST00000410588 110 ntBASIC-0.28□□□□□ -2.45
USF3Q68DE3 RNU6-293P-201ENST00000411259 106 ntBASIC-0.28□□□□□ -2.45
USF3Q68DE3 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC-0.28□□□□□ -2.45
USF3Q68DE3 MTND1P20-201ENST00000430341 950 ntBASIC-0.28□□□□□ -2.45
USF3Q68DE3 SNORD4A-201ENST00000459174 72 ntBASIC-0.28□□□□□ -2.45
USF3Q68DE3 AC112206.4-201ENST00000515142 405 ntBASIC-0.28□□□□□ -2.45
USF3Q68DE3 RNU6-1069P-201ENST00000516612 133 ntBASIC-0.28□□□□□ -2.45
USF3Q68DE3 DEFB131D-201ENST00000526803 184 ntBASIC-0.28□□□□□ -2.45
USF3Q68DE3 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC-0.28□□□□□ -2.45
USF3Q68DE3 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC-0.28□□□□□ -2.45
USF3Q68DE3 MIR4743-201ENST00000584576 69 ntBASIC-0.28□□□□□ -2.45
USF3Q68DE3 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC-0.28□□□□□ -2.45
USF3Q68DE3 RNA5SP201-201ENST00000410316 124 ntBASIC-0.29□□□□□ -2.46
USF3Q68DE3 RNU6-575P-201ENST00000411326 105 ntBASIC-0.29□□□□□ -2.46
USF3Q68DE3 RNU6-57P-201ENST00000411348 103 ntBASIC-0.29□□□□□ -2.46
USF3Q68DE3 AC016909.1-201ENST00000415916 166 ntBASIC-0.29□□□□□ -2.46
USF3Q68DE3 UBE2D3P3-201ENST00000426992 425 ntBASIC-0.29□□□□□ -2.46
USF3Q68DE3 OFD1P4Y-201ENST00000455273 1179 ntBASIC-0.29□□□□□ -2.46
USF3Q68DE3 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC-0.29□□□□□ -2.46
USF3Q68DE3 AC119751.4-201ENST00000507498 357 ntBASIC-0.29□□□□□ -2.46
USF3Q68DE3 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC-0.29□□□□□ -2.46
USF3Q68DE3 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC-0.29□□□□□ -2.46
USF3Q68DE3 AL034555.1-201ENST00000604816 211 ntBASIC-0.29□□□□□ -2.46
USF3Q68DE3 AC063943.3-201ENST00000615562 356 ntBASIC-0.29□□□□□ -2.46
USF3Q68DE3 AL450472.1-202ENST00000637286 180 ntBASIC-0.29□□□□□ -2.46
USF3Q68DE3 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC-0.29□□□□□ -2.46
USF3Q68DE3 RNU6-1099P-201ENST00000363533 107 ntBASIC-0.29□□□□□ -2.46
USF3Q68DE3 RNU6-853P-201ENST00000364306 107 ntBASIC-0.29□□□□□ -2.46
USF3Q68DE3 SNORA32.2-201ENST00000384049 122 ntBASIC-0.29□□□□□ -2.46
USF3Q68DE3 MIR891A-201ENST00000401237 79 ntBASIC-0.29□□□□□ -2.46
USF3Q68DE3 RN7SKP266-201ENST00000410232 287 ntBASIC-0.29□□□□□ -2.46
USF3Q68DE3 HIGD1AP15-201ENST00000416198 280 ntBASIC-0.29□□□□□ -2.46
USF3Q68DE3 AL353777.1-201ENST00000425552 326 ntBASIC-0.29□□□□□ -2.46
USF3Q68DE3 NDUFB1P2-201ENST00000449477 176 ntBASIC-0.29□□□□□ -2.46
USF3Q68DE3 NDUFA4P2-201ENST00000489989 244 ntBASIC-0.29□□□□□ -2.46
USF3Q68DE3 OR9P1P-201ENST00000496431 281 ntBASIC-0.29□□□□□ -2.46
USF3Q68DE3 AC026414.1-201ENST00000504046 698 ntBASIC-0.29□□□□□ -2.46
USF3Q68DE3 AC113347.3-201ENST00000509113 148 ntBASIC-0.29□□□□□ -2.46
USF3Q68DE3 AC091874.1-201ENST00000511402 339 ntBASIC-0.29□□□□□ -2.46
USF3Q68DE3 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC-0.29□□□□□ -2.46
USF3Q68DE3 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC-0.29□□□□□ -2.46
USF3Q68DE3 AC122134.1-202ENST00000569111 1201 ntBASIC-0.29□□□□□ -2.46
USF3Q68DE3 AC131055.1-201ENST00000584626 316 ntBASIC-0.29□□□□□ -2.46
USF3Q68DE3 PCGEM1.1-201ENST00000613431 131 ntBASIC-0.29□□□□□ -2.46
USF3Q68DE3 CDR1-202ENST00000625883 1485 ntBASIC-0.29□□□□□ -2.46
USF3Q68DE3 RNU6-369P-201ENST00000362515 102 ntBASIC-0.3□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms