Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.98□□□□□ -1.93
VPS53Q5VIR6 RPS15AP11-201ENST00000594193 385 ntBASIC2.98□□□□□ -1.93
VPS53Q5VIR6 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.98□□□□□ -1.93
VPS53Q5VIR6 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.98□□□□□ -1.93
VPS53Q5VIR6 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.98□□□□□ -1.93
VPS53Q5VIR6 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.97□□□□□ -1.93
VPS53Q5VIR6 RNU6-1010P-201ENST00000362757 107 ntBASIC2.97□□□□□ -1.93
VPS53Q5VIR6 RNU6-137P-201ENST00000363680 108 ntBASIC2.97□□□□□ -1.93
VPS53Q5VIR6 Y_RNA.500-201ENST00000384466 111 ntBASIC2.97□□□□□ -1.93
VPS53Q5VIR6 MIR32-201ENST00000384965 70 ntBASIC2.97□□□□□ -1.93
VPS53Q5VIR6 AC097463.2-201ENST00000421074 142 ntBASIC2.97□□□□□ -1.93
VPS53Q5VIR6 RNU7-87P-201ENST00000459343 62 ntBASIC2.97□□□□□ -1.93
VPS53Q5VIR6 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.97□□□□□ -1.93
VPS53Q5VIR6 SNRPGP7-201ENST00000469016 106 ntBASIC2.97□□□□□ -1.93
VPS53Q5VIR6 SRP72-202ENST00000504757 745 ntTSL 2 BASIC2.97□□□□□ -1.93
VPS53Q5VIR6 AC105137.2-201ENST00000569073 466 ntBASIC2.97□□□□□ -1.93
VPS53Q5VIR6 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.97□□□□□ -1.93
VPS53Q5VIR6 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.97□□□□□ -1.93
VPS53Q5VIR6 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.96□□□□□ -1.93
VPS53Q5VIR6 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
VPS53Q5VIR6 RNU6-238P-201ENST00000363313 106 ntBASIC2.96□□□□□ -1.94
VPS53Q5VIR6 Y_RNA.193-201ENST00000363979 102 ntBASIC2.96□□□□□ -1.94
VPS53Q5VIR6 RNU6-702P-201ENST00000364982 107 ntBASIC2.96□□□□□ -1.94
VPS53Q5VIR6 U8.10-201ENST00000384260 133 ntBASIC2.96□□□□□ -1.94
VPS53Q5VIR6 RNU6-220P-201ENST00000390919 107 ntBASIC2.96□□□□□ -1.94
VPS53Q5VIR6 RNU1-139P-201ENST00000391307 165 ntBASIC2.96□□□□□ -1.94
VPS53Q5VIR6 RPS26P42-201ENST00000413485 326 ntBASIC2.96□□□□□ -1.94
VPS53Q5VIR6 SDAD1P3-201ENST00000427380 333 ntBASIC2.96□□□□□ -1.94
VPS53Q5VIR6 RPL30P4-201ENST00000429309 333 ntBASIC2.96□□□□□ -1.94
VPS53Q5VIR6 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.96□□□□□ -1.94
VPS53Q5VIR6 SNORA25.11-201ENST00000515935 105 ntBASIC2.96□□□□□ -1.94
VPS53Q5VIR6 AC023824.2-201ENST00000566185 400 ntBASIC2.96□□□□□ -1.94
VPS53Q5VIR6 AC105245.1-201ENST00000581934 244 ntBASIC2.96□□□□□ -1.94
VPS53Q5VIR6 RAC1P9-201ENST00000604990 392 ntBASIC2.96□□□□□ -1.94
VPS53Q5VIR6 AL121655.1-201ENST00000605811 308 ntBASIC2.96□□□□□ -1.94
VPS53Q5VIR6 AC010205.1-201ENST00000616668 449 ntBASIC2.96□□□□□ -1.94
VPS53Q5VIR6 MESTIT1_1.1-201ENST00000618871 140 ntBASIC2.96□□□□□ -1.94
VPS53Q5VIR6 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.95□□□□□ -1.94
VPS53Q5VIR6 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.95□□□□□ -1.94
VPS53Q5VIR6 SNORD115-8-201ENST00000363856 82 ntBASIC2.95□□□□□ -1.94
VPS53Q5VIR6 SNORD115-38-201ENST00000365037 82 ntBASIC2.95□□□□□ -1.94
VPS53Q5VIR6 RNU6-708P-201ENST00000384217 107 ntBASIC2.95□□□□□ -1.94
VPS53Q5VIR6 RNU6-611P-201ENST00000384276 104 ntBASIC2.95□□□□□ -1.94
VPS53Q5VIR6 Y_RNA.471-201ENST00000384312 102 ntBASIC2.95□□□□□ -1.94
VPS53Q5VIR6 SNORA67.4-201ENST00000384688 142 ntBASIC2.95□□□□□ -1.94
VPS53Q5VIR6 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
VPS53Q5VIR6 USP9YP16-201ENST00000430287 407 ntBASIC2.95□□□□□ -1.94
VPS53Q5VIR6 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC2.95□□□□□ -1.94
VPS53Q5VIR6 USP9YP23-201ENST00000455085 407 ntBASIC2.95□□□□□ -1.94
VPS53Q5VIR6 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC2.95□□□□□ -1.94
VPS53Q5VIR6 U8.22-201ENST00000459141 133 ntBASIC2.95□□□□□ -1.94
VPS53Q5VIR6 snoU13.14-201ENST00000459372 104 ntBASIC2.95□□□□□ -1.94
VPS53Q5VIR6 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.95□□□□□ -1.94
VPS53Q5VIR6 RNU6-1114P-201ENST00000516022 107 ntBASIC2.95□□□□□ -1.94
VPS53Q5VIR6 RNU6-1143P-201ENST00000516125 104 ntBASIC2.95□□□□□ -1.94
VPS53Q5VIR6 RNU6-567P-201ENST00000516746 107 ntBASIC2.95□□□□□ -1.94
VPS53Q5VIR6 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC2.95□□□□□ -1.94
VPS53Q5VIR6 AC079598.5-201ENST00000547460 117 ntBASIC2.95□□□□□ -1.94
VPS53Q5VIR6 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.95□□□□□ -1.94
VPS53Q5VIR6 AC090517.1-201ENST00000569307 266 ntBASIC2.95□□□□□ -1.94
VPS53Q5VIR6 MYL12BP1-201ENST00000569826 507 ntBASIC2.95□□□□□ -1.94
VPS53Q5VIR6 MIR3136-201ENST00000583498 78 ntBASIC2.95□□□□□ -1.94
VPS53Q5VIR6 AC006006.1-201ENST00000603082 144 ntBASIC2.95□□□□□ -1.94
VPS53Q5VIR6 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.95□□□□□ -1.94
VPS53Q5VIR6 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.95□□□□□ -1.94
VPS53Q5VIR6 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.95□□□□□ -1.94
VPS53Q5VIR6 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.94□□□□□ -1.94
VPS53Q5VIR6 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
VPS53Q5VIR6 MIR449A-201ENST00000362113 91 ntBASIC2.94□□□□□ -1.94
VPS53Q5VIR6 VTRNA1-1-201ENST00000363120 99 ntBASIC2.94□□□□□ -1.94
VPS53Q5VIR6 Y_RNA.214-201ENST00000364201 112 ntBASIC2.94□□□□□ -1.94
VPS53Q5VIR6 RNU6-26P-201ENST00000383985 107 ntBASIC2.94□□□□□ -1.94
VPS53Q5VIR6 SNORA36A-201ENST00000384221 132 ntBASIC2.94□□□□□ -1.94
VPS53Q5VIR6 RNA5SP213-201ENST00000391031 106 ntBASIC2.94□□□□□ -1.94
VPS53Q5VIR6 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.94□□□□□ -1.94
VPS53Q5VIR6 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.94□□□□□ -1.94
VPS53Q5VIR6 RPEP5-201ENST00000441137 268 ntBASIC2.94□□□□□ -1.94
VPS53Q5VIR6 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.94□□□□□ -1.94
VPS53Q5VIR6 RNU6-1198P-201ENST00000516904 67 ntBASIC2.94□□□□□ -1.94
VPS53Q5VIR6 AC027288.2-201ENST00000553028 243 ntBASIC2.94□□□□□ -1.94
VPS53Q5VIR6 U4.3-201ENST00000621047 82 ntBASIC2.94□□□□□ -1.94
VPS53Q5VIR6 MIR8062-201ENST00000621515 85 ntBASIC2.94□□□□□ -1.94
VPS53Q5VIR6 MAPK10-266ENST00000641066 6555 ntBASIC2.94□□□□□ -1.94
VPS53Q5VIR6 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.93□□□□□ -1.94
VPS53Q5VIR6 RNU6-222P-201ENST00000362438 107 ntBASIC2.93□□□□□ -1.94
VPS53Q5VIR6 RNU6-1159P-201ENST00000362933 107 ntBASIC2.93□□□□□ -1.94
VPS53Q5VIR6 SNORD114-19-201ENST00000363072 75 ntBASIC2.93□□□□□ -1.94
VPS53Q5VIR6 Y_RNA.183-201ENST00000363882 113 ntBASIC2.93□□□□□ -1.94
VPS53Q5VIR6 Y_RNA.319-201ENST00000365138 92 ntBASIC2.93□□□□□ -1.94
VPS53Q5VIR6 RNU6-713P-201ENST00000384761 107 ntBASIC2.93□□□□□ -1.94
VPS53Q5VIR6 MT-TG-201ENST00000387429 68 ntBASIC2.93□□□□□ -1.94
VPS53Q5VIR6 Y_RNA.618-201ENST00000410949 107 ntBASIC2.93□□□□□ -1.94
VPS53Q5VIR6 ELOCP20-201ENST00000422460 345 ntBASIC2.93□□□□□ -1.94
VPS53Q5VIR6 AC012306.1-201ENST00000423267 114 ntBASIC2.93□□□□□ -1.94
VPS53Q5VIR6 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.93□□□□□ -1.94
VPS53Q5VIR6 EIF1P2-201ENST00000428233 350 ntBASIC2.93□□□□□ -1.94
VPS53Q5VIR6 DYNLT3P2-201ENST00000442517 295 ntBASIC2.93□□□□□ -1.94
VPS53Q5VIR6 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC2.93□□□□□ -1.94
VPS53Q5VIR6 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.93□□□□□ -1.94
VPS53Q5VIR6 AC112771.1-201ENST00000463581 102 ntBASIC2.93□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms