Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC092423.1-201ENST00000430165 186 ntBASIC2.05□□□□□ -2.08
PDLIM3Q53GG5 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC2.05□□□□□ -2.08
PDLIM3Q53GG5 snoU13.18-201ENST00000459483 104 ntBASIC2.05□□□□□ -2.08
PDLIM3Q53GG5 Y_RNA.718-201ENST00000517110 102 ntBASIC2.05□□□□□ -2.08
PDLIM3Q53GG5 RNU6-667P-201ENST00000517186 102 ntBASIC2.05□□□□□ -2.08
PDLIM3Q53GG5 SNORA31.25-201ENST00000517242 134 ntBASIC2.05□□□□□ -2.08
PDLIM3Q53GG5 AL590705.4-201ENST00000532209 134 ntBASIC2.05□□□□□ -2.08
PDLIM3Q53GG5 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC2.05□□□□□ -2.08
PDLIM3Q53GG5 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.05□□□□□ -2.08
PDLIM3Q53GG5 MIR4529-201ENST00000578110 78 ntBASIC2.05□□□□□ -2.08
PDLIM3Q53GG5 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
PDLIM3Q53GG5 AC016727.2-201ENST00000603988 621 ntBASIC2.05□□□□□ -2.08
PDLIM3Q53GG5 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC2.05□□□□□ -2.08
PDLIM3Q53GG5 MIR1244-1-201ENST00000612829 85 ntBASIC2.05□□□□□ -2.08
PDLIM3Q53GG5 MIR1244-3-201ENST00000635744 85 ntBASIC2.05□□□□□ -2.08
PDLIM3Q53GG5 MIR1244-2-201ENST00000636449 85 ntBASIC2.05□□□□□ -2.08
PDLIM3Q53GG5 MIR1244-4-202ENST00000636813 85 ntBASIC2.05□□□□□ -2.08
PDLIM3Q53GG5 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
PDLIM3Q53GG5 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.05□□□□□ -2.08
PDLIM3Q53GG5 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
PDLIM3Q53GG5 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.04□□□□□ -2.08
PDLIM3Q53GG5 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
PDLIM3Q53GG5 SNORA25B-201ENST00000365507 128 ntBASIC2.04□□□□□ -2.08
PDLIM3Q53GG5 SNORA18.2-201ENST00000383865 132 ntBASIC2.04□□□□□ -2.08
PDLIM3Q53GG5 Y_RNA.419-201ENST00000384041 102 ntBASIC2.04□□□□□ -2.08
PDLIM3Q53GG5 RNY4P36-201ENST00000391116 96 ntBASIC2.04□□□□□ -2.08
PDLIM3Q53GG5 EDDM3CP-201ENST00000415977 425 ntBASIC2.04□□□□□ -2.08
PDLIM3Q53GG5 ZNF204P-201ENST00000416749 2397 ntBASIC2.04□□□□□ -2.08
PDLIM3Q53GG5 AC243428.1-201ENST00000421099 264 ntBASIC2.04□□□□□ -2.08
PDLIM3Q53GG5 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.04□□□□□ -2.08
PDLIM3Q53GG5 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.04□□□□□ -2.08
PDLIM3Q53GG5 snoU13.30-201ENST00000458951 104 ntBASIC2.04□□□□□ -2.08
PDLIM3Q53GG5 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC2.04□□□□□ -2.08
PDLIM3Q53GG5 AC022493.2-201ENST00000506122 481 ntBASIC2.04□□□□□ -2.08
PDLIM3Q53GG5 AC097473.1-201ENST00000508142 408 ntBASIC2.04□□□□□ -2.08
PDLIM3Q53GG5 FGF7P4-201ENST00000509595 295 ntBASIC2.04□□□□□ -2.08
PDLIM3Q53GG5 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.04□□□□□ -2.08
PDLIM3Q53GG5 RNU7-175P-201ENST00000515915 61 ntBASIC2.04□□□□□ -2.08
PDLIM3Q53GG5 RNU6-264P-201ENST00000517134 104 ntBASIC2.04□□□□□ -2.08
PDLIM3Q53GG5 EIF4A1P12-201ENST00000551910 141 ntBASIC2.04□□□□□ -2.08
PDLIM3Q53GG5 AL117336.2-201ENST00000602435 335 ntBASIC2.04□□□□□ -2.08
PDLIM3Q53GG5 AL355802.3-201ENST00000607571 545 ntBASIC2.04□□□□□ -2.08
PDLIM3Q53GG5 AC104985.2-201ENST00000620598 500 ntBASIC2.04□□□□□ -2.08
PDLIM3Q53GG5 AL359697.1-201ENST00000624879 587 ntBASIC2.04□□□□□ -2.08
PDLIM3Q53GG5 MIR1248-201ENST00000629190 106 ntBASIC2.04□□□□□ -2.08
PDLIM3Q53GG5 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.04□□□□□ -2.08
PDLIM3Q53GG5 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 Y_RNA.116-201ENST00000363292 103 ntBASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 RNU6-595P-201ENST00000363944 107 ntBASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 SNORD114-30-201ENST00000364448 72 ntBASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 RNU6-99P-201ENST00000364721 107 ntBASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 RNU6-596P-201ENST00000365395 98 ntBASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 AL356057.3-201ENST00000402607 340 ntBASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 MTCYBP2-201ENST00000407745 171 ntBASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 RNA5SP201-201ENST00000410316 124 ntBASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 MTCO2P27-201ENST00000420740 428 ntBASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 MTND3P23-201ENST00000431980 347 ntBASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 RN7SKP210-201ENST00000459176 261 ntBASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 AC055731.1-201ENST00000474387 401 ntBASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 RPS27P21-201ENST00000486977 252 ntBASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 RNU5F-4P-201ENST00000516581 114 ntBASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 SNORA48.11-201ENST00000517015 89 ntBASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 RNA5SP402-201ENST00000517148 110 ntBASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 RNU2-19P-201ENST00000517288 84 ntBASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 ANP32BP3-201ENST00000559213 706 ntBASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 MIR1273D-201ENST00000577266 86 ntBASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 MIR5696-201ENST00000578474 85 ntBASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 AL133255.1-201ENST00000606374 441 ntBASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 AC126177.8-201ENST00000618339 1015 ntBASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 SCARNA4-201ENST00000629045 128 ntBASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
PDLIM3Q53GG5 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
PDLIM3Q53GG5 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
PDLIM3Q53GG5 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
PDLIM3Q53GG5 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
PDLIM3Q53GG5 RNU6-222P-201ENST00000362438 107 ntBASIC2.02□□□□□ -2.09
PDLIM3Q53GG5 RNU4-79P-201ENST00000362764 141 ntBASIC2.02□□□□□ -2.09
PDLIM3Q53GG5 SNORA16B-201ENST00000364674 135 ntBASIC2.02□□□□□ -2.09
PDLIM3Q53GG5 MIR17-201ENST00000385012 84 ntBASIC2.02□□□□□ -2.09
PDLIM3Q53GG5 SNORA12.2-201ENST00000391040 156 ntBASIC2.02□□□□□ -2.09
PDLIM3Q53GG5 RNU6-700P-201ENST00000391043 107 ntBASIC2.02□□□□□ -2.09
PDLIM3Q53GG5 U3.40-201ENST00000408706 208 ntBASIC2.02□□□□□ -2.09
PDLIM3Q53GG5 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.02□□□□□ -2.09
PDLIM3Q53GG5 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.02□□□□□ -2.09
PDLIM3Q53GG5 AC236972.2-201ENST00000434979 310 ntBASIC2.02□□□□□ -2.09
PDLIM3Q53GG5 OR2AQ1P-201ENST00000451972 200 ntBASIC2.02□□□□□ -2.09
PDLIM3Q53GG5 SNORD19B-201ENST00000459623 84 ntBASIC2.02□□□□□ -2.09
PDLIM3Q53GG5 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC2.02□□□□□ -2.09
PDLIM3Q53GG5 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC2.02□□□□□ -2.09
PDLIM3Q53GG5 AC093303.1-201ENST00000514549 295 ntBASIC2.02□□□□□ -2.09
PDLIM3Q53GG5 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC2.02□□□□□ -2.09
PDLIM3Q53GG5 UBL5P4-201ENST00000562584 236 ntBASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms