Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 RNU6-107P-201ENST00000516643 102 ntBASIC3.37□□□□□ -1.87
SF3A1Q15459 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC3.37□□□□□ -1.87
SF3A1Q15459 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.37□□□□□ -1.87
SF3A1Q15459 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
SF3A1Q15459 AC068205.3-201ENST00000636385 468 ntBASIC3.37□□□□□ -1.87
SF3A1Q15459 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.37□□□□□ -1.87
SF3A1Q15459 SNORA71.1-201ENST00000364523 117 ntBASIC3.36□□□□□ -1.87
SF3A1Q15459 SNORD87-201ENST00000364849 89 ntBASIC3.36□□□□□ -1.87
SF3A1Q15459 RNU6-1145P-201ENST00000384246 107 ntBASIC3.36□□□□□ -1.87
SF3A1Q15459 MIR606-201ENST00000384851 96 ntBASIC3.36□□□□□ -1.87
SF3A1Q15459 AL451074.5-201ENST00000415894 435 ntBASIC3.36□□□□□ -1.87
SF3A1Q15459 FCF1P4-201ENST00000448326 183 ntBASIC3.36□□□□□ -1.87
SF3A1Q15459 AC007395.1-201ENST00000451333 677 ntBASIC3.36□□□□□ -1.87
SF3A1Q15459 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC3.36□□□□□ -1.87
SF3A1Q15459 PRELID3BP1-201ENST00000457142 540 ntBASIC3.36□□□□□ -1.87
SF3A1Q15459 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.36□□□□□ -1.87
SF3A1Q15459 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.36□□□□□ -1.87
SF3A1Q15459 SCARNA15.1-201ENST00000516384 125 ntBASIC3.36□□□□□ -1.87
SF3A1Q15459 PRELID2P1-201ENST00000552837 301 ntBASIC3.36□□□□□ -1.87
SF3A1Q15459 MIR3126-201ENST00000577443 74 ntBASIC3.36□□□□□ -1.87
SF3A1Q15459 AC104695.3-201ENST00000604052 296 ntBASIC3.36□□□□□ -1.87
SF3A1Q15459 DLEU2_2.2-201ENST00000615474 90 ntBASIC3.36□□□□□ -1.87
SF3A1Q15459 AL078596.1-201ENST00000624856 447 ntBASIC3.36□□□□□ -1.87
SF3A1Q15459 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC3.36□□□□□ -1.87
SF3A1Q15459 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.35□□□□□ -1.87
SF3A1Q15459 SNORD31B-201ENST00000364977 69 ntBASIC3.35□□□□□ -1.87
SF3A1Q15459 RNU6-823P-201ENST00000391042 103 ntBASIC3.35□□□□□ -1.87
SF3A1Q15459 MIR300-201ENST00000401138 83 ntBASIC3.35□□□□□ -1.87
SF3A1Q15459 MIR1283-1-201ENST00000408494 87 ntBASIC3.35□□□□□ -1.87
SF3A1Q15459 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.35□□□□□ -1.87
SF3A1Q15459 RPS29P6-201ENST00000438196 145 ntBASIC3.35□□□□□ -1.87
SF3A1Q15459 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC3.35□□□□□ -1.87
SF3A1Q15459 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC3.35□□□□□ -1.87
SF3A1Q15459 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC3.35□□□□□ -1.87
SF3A1Q15459 AC010469.2-201ENST00000496412 480 ntBASIC3.35□□□□□ -1.87
SF3A1Q15459 AC093852.1-201ENST00000503587 266 ntBASIC3.35□□□□□ -1.87
SF3A1Q15459 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC3.35□□□□□ -1.87
SF3A1Q15459 AC093259.1-201ENST00000509755 300 ntBASIC3.35□□□□□ -1.87
SF3A1Q15459 SNORA40.9-201ENST00000515895 93 ntBASIC3.35□□□□□ -1.87
SF3A1Q15459 AC022616.4-201ENST00000522985 181 ntBASIC3.35□□□□□ -1.87
SF3A1Q15459 AC011476.5-201ENST00000615594 130 ntBASIC3.35□□□□□ -1.87
SF3A1Q15459 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC3.35□□□□□ -1.87
SF3A1Q15459 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
SF3A1Q15459 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
SF3A1Q15459 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC3.35□□□□□ -1.87
SF3A1Q15459 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
SF3A1Q15459 AP006437.1-201ENST00000641440 3685 ntBASIC3.34□□□□□ -1.87
SF3A1Q15459 RNU1-35P-201ENST00000362782 153 ntBASIC3.34□□□□□ -1.87
SF3A1Q15459 Y_RNA.455-201ENST00000384230 98 ntBASIC3.34□□□□□ -1.87
SF3A1Q15459 COTL1P1-201ENST00000422309 375 ntBASIC3.34□□□□□ -1.87
SF3A1Q15459 SDAD1P3-201ENST00000427380 333 ntBASIC3.34□□□□□ -1.87
SF3A1Q15459 AL118496.2-201ENST00000448300 230 ntBASIC3.34□□□□□ -1.87
SF3A1Q15459 PCNPP5-201ENST00000452246 481 ntBASIC3.34□□□□□ -1.87
SF3A1Q15459 AL137159.1-201ENST00000452808 512 ntBASIC3.34□□□□□ -1.87
SF3A1Q15459 AC114982.1-201ENST00000469402 321 ntBASIC3.34□□□□□ -1.87
SF3A1Q15459 RNU6-1137P-201ENST00000517073 99 ntBASIC3.34□□□□□ -1.87
SF3A1Q15459 CYCSP23-201ENST00000519781 313 ntBASIC3.34□□□□□ -1.87
SF3A1Q15459 LARP7P3-201ENST00000579888 337 ntBASIC3.34□□□□□ -1.87
SF3A1Q15459 MIR4659A-201ENST00000580269 81 ntBASIC3.34□□□□□ -1.87
SF3A1Q15459 AL357075.2-201ENST00000614906 189 ntBASIC3.34□□□□□ -1.87
SF3A1Q15459 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
SF3A1Q15459 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC3.33□□□□□ -1.88
SF3A1Q15459 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.33□□□□□ -1.88
SF3A1Q15459 Y_RNA.471-201ENST00000384312 102 ntBASIC3.33□□□□□ -1.88
SF3A1Q15459 RNU6-1160P-201ENST00000384546 104 ntBASIC3.33□□□□□ -1.88
SF3A1Q15459 AC113618.1-201ENST00000416747 285 ntBASIC3.33□□□□□ -1.88
SF3A1Q15459 AC022018.1-201ENST00000430685 241 ntBASIC3.33□□□□□ -1.88
SF3A1Q15459 AC074290.1-201ENST00000448883 135 ntBASIC3.33□□□□□ -1.88
SF3A1Q15459 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC3.33□□□□□ -1.88
SF3A1Q15459 RPL23AP94-201ENST00000512518 302 ntBASIC3.33□□□□□ -1.88
SF3A1Q15459 NDUFA5P6-201ENST00000542110 379 ntBASIC3.33□□□□□ -1.88
SF3A1Q15459 AC026271.5-201ENST00000577873 130 ntBASIC3.33□□□□□ -1.88
SF3A1Q15459 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.33□□□□□ -1.88
SF3A1Q15459 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SF3A1Q15459 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SF3A1Q15459 SNORA9.2-201ENST00000365361 133 ntBASIC3.32□□□□□ -1.88
SF3A1Q15459 MIR586-201ENST00000385035 97 ntBASIC3.32□□□□□ -1.88
SF3A1Q15459 MIR181B1-201ENST00000385240 110 ntBASIC3.32□□□□□ -1.88
SF3A1Q15459 RNU6-625P-201ENST00000459412 107 ntBASIC3.32□□□□□ -1.88
SF3A1Q15459 S100A11P2-201ENST00000467589 312 ntBASIC3.32□□□□□ -1.88
SF3A1Q15459 UBE2DNL-203ENST00000474922 222 ntBASIC3.32□□□□□ -1.88
SF3A1Q15459 HMGN2P9-201ENST00000476875 229 ntBASIC3.32□□□□□ -1.88
SF3A1Q15459 RNA5SP341-201ENST00000516261 117 ntBASIC3.32□□□□□ -1.88
SF3A1Q15459 RNU6-764P-201ENST00000516396 105 ntBASIC3.32□□□□□ -1.88
SF3A1Q15459 RNU6-1012P-201ENST00000516606 109 ntBASIC3.32□□□□□ -1.88
SF3A1Q15459 Y_RNA.715-201ENST00000517082 110 ntBASIC3.32□□□□□ -1.88
SF3A1Q15459 CYCSP26-201ENST00000534107 320 ntBASIC3.32□□□□□ -1.88
SF3A1Q15459 AC107016.2-201ENST00000547968 190 ntBASIC3.32□□□□□ -1.88
SF3A1Q15459 EIF4BP1-201ENST00000554881 351 ntBASIC3.32□□□□□ -1.88
SF3A1Q15459 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.32□□□□□ -1.88
SF3A1Q15459 AC006386.2-201ENST00000624491 75 ntBASIC3.32□□□□□ -1.88
SF3A1Q15459 AC012005.1-201ENST00000624575 75 ntBASIC3.32□□□□□ -1.88
SF3A1Q15459 AC008873.1-201ENST00000625051 138 ntBASIC3.32□□□□□ -1.88
SF3A1Q15459 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.32□□□□□ -1.88
SF3A1Q15459 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SF3A1Q15459 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SF3A1Q15459 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
SF3A1Q15459 VTRNA1-1-201ENST00000363120 99 ntBASIC3.31□□□□□ -1.88
SF3A1Q15459 Y_RNA.162-201ENST00000363683 102 ntBASIC3.31□□□□□ -1.88
SF3A1Q15459 RNU1-148P-201ENST00000384472 162 ntBASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 115.3 ms