Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.6□□□□□ -1.99
HOXA4Q00056 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC2.6□□□□□ -1.99
HOXA4Q00056 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
HOXA4Q00056 AC073346.2-201ENST00000624724 2058 ntBASIC2.59□□□□□ -1.99
HOXA4Q00056 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC2.59□□□□□ -1.99
HOXA4Q00056 AC073325.2-201ENST00000339545 159 ntBASIC2.59□□□□□ -1.99
HOXA4Q00056 Y_RNA.76-201ENST00000362931 109 ntBASIC2.59□□□□□ -1.99
HOXA4Q00056 SNORA72.2-201ENST00000365028 127 ntBASIC2.59□□□□□ -1.99
HOXA4Q00056 Y_RNA.383-201ENST00000383855 97 ntBASIC2.59□□□□□ -1.99
HOXA4Q00056 RNU6-209P-201ENST00000384118 107 ntBASIC2.59□□□□□ -1.99
HOXA4Q00056 SNORA9-201ENST00000384215 133 ntBASIC2.59□□□□□ -1.99
HOXA4Q00056 SNORA7.4-201ENST00000384249 137 ntBASIC2.59□□□□□ -1.99
HOXA4Q00056 MIR491-201ENST00000384877 84 ntBASIC2.59□□□□□ -1.99
HOXA4Q00056 SNORA11.1-201ENST00000408133 129 ntBASIC2.59□□□□□ -1.99
HOXA4Q00056 RNA5SP504-201ENST00000410676 117 ntBASIC2.59□□□□□ -1.99
HOXA4Q00056 RNU6-1328P-201ENST00000410938 106 ntBASIC2.59□□□□□ -1.99
HOXA4Q00056 RNU6-1199P-201ENST00000411249 104 ntBASIC2.59□□□□□ -1.99
HOXA4Q00056 RPL23AP36-201ENST00000413895 458 ntBASIC2.59□□□□□ -1.99
HOXA4Q00056 AL390729.2-201ENST00000416137 156 ntBASIC2.59□□□□□ -1.99
HOXA4Q00056 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.59□□□□□ -1.99
HOXA4Q00056 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC2.59□□□□□ -1.99
HOXA4Q00056 RPS12P18-201ENST00000442381 270 ntBASIC2.59□□□□□ -1.99
HOXA4Q00056 MRPS10P1-201ENST00000448483 130 ntBASIC2.59□□□□□ -1.99
HOXA4Q00056 AC091179.1-201ENST00000461606 579 ntBASIC2.59□□□□□ -1.99
HOXA4Q00056 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.59□□□□□ -1.99
HOXA4Q00056 RN7SL330P-201ENST00000469709 307 ntBASIC2.59□□□□□ -1.99
HOXA4Q00056 RN7SL807P-201ENST00000470923 297 ntBASIC2.59□□□□□ -1.99
HOXA4Q00056 AC140059.1-201ENST00000489238 361 ntBASIC2.59□□□□□ -1.99
HOXA4Q00056 RPL21P9-201ENST00000556149 474 ntBASIC2.59□□□□□ -1.99
HOXA4Q00056 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.59□□□□□ -1.99
HOXA4Q00056 MIR5047-201ENST00000579212 100 ntBASIC2.59□□□□□ -1.99
HOXA4Q00056 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.59□□□□□ -1.99
HOXA4Q00056 AC008739.2-201ENST00000597006 317 ntBASIC2.59□□□□□ -1.99
HOXA4Q00056 AC091953.5-201ENST00000622919 233 ntBASIC2.59□□□□□ -1.99
HOXA4Q00056 AC091932.3-201ENST00000624223 323 ntBASIC2.59□□□□□ -1.99
HOXA4Q00056 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.59□□□□□ -2
HOXA4Q00056 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.59□□□□□ -2
HOXA4Q00056 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.59□□□□□ -2
HOXA4Q00056 AC026241.1-201ENST00000517873 2142 ntBASIC2.59□□□□□ -2
HOXA4Q00056 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.58□□□□□ -2
HOXA4Q00056 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.58□□□□□ -2
HOXA4Q00056 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC2.58□□□□□ -2
HOXA4Q00056 AC091152.2-201ENST00000591628 2569 ntBASIC2.58□□□□□ -2
HOXA4Q00056 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.58□□□□□ -2
HOXA4Q00056 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
HOXA4Q00056 Y_RNA.44-201ENST00000362676 108 ntBASIC2.58□□□□□ -2
HOXA4Q00056 RNY1-201ENST00000364228 113 ntBASIC2.58□□□□□ -2
HOXA4Q00056 RNU6-740P-201ENST00000364734 105 ntBASIC2.58□□□□□ -2
HOXA4Q00056 RNU6-1083P-201ENST00000384022 107 ntBASIC2.58□□□□□ -2
HOXA4Q00056 Y_RNA.418-201ENST00000384029 102 ntBASIC2.58□□□□□ -2
HOXA4Q00056 RNU6-651P-201ENST00000411040 105 ntBASIC2.58□□□□□ -2
HOXA4Q00056 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.58□□□□□ -2
HOXA4Q00056 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.58□□□□□ -2
HOXA4Q00056 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC2.58□□□□□ -2
HOXA4Q00056 RPS27P29-201ENST00000463110 252 ntBASIC2.58□□□□□ -2
HOXA4Q00056 RNA5SP217-201ENST00000515959 91 ntBASIC2.58□□□□□ -2
HOXA4Q00056 RNU4-71P-201ENST00000516258 113 ntBASIC2.58□□□□□ -2
HOXA4Q00056 RNA5SP341-201ENST00000516261 117 ntBASIC2.58□□□□□ -2
HOXA4Q00056 RNU4ATAC15P-201ENST00000516415 126 ntBASIC2.58□□□□□ -2
HOXA4Q00056 RNU6-107P-201ENST00000516643 102 ntBASIC2.58□□□□□ -2
HOXA4Q00056 RNU1-117P-201ENST00000517041 158 ntBASIC2.58□□□□□ -2
HOXA4Q00056 MIR3186-201ENST00000577404 85 ntBASIC2.58□□□□□ -2
HOXA4Q00056 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.58□□□□□ -2
HOXA4Q00056 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC2.58□□□□□ -2
HOXA4Q00056 AL590240.4-201ENST00000616908 390 ntBASIC2.58□□□□□ -2
HOXA4Q00056 AC092628.2-201ENST00000622492 339 ntBASIC2.58□□□□□ -2
HOXA4Q00056 MIR7515-201ENST00000637837 67 ntBASIC2.58□□□□□ -2
HOXA4Q00056 ANKRD30BP1-201ENST00000451052 2186 ntBASIC2.57□□□□□ -2
HOXA4Q00056 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.57□□□□□ -2
HOXA4Q00056 RNA5SP139-201ENST00000364340 117 ntBASIC2.57□□□□□ -2
HOXA4Q00056 AL603908.1-201ENST00000406098 201 ntBASIC2.57□□□□□ -2
HOXA4Q00056 RNU4-47P-201ENST00000410876 114 ntBASIC2.57□□□□□ -2
HOXA4Q00056 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC2.57□□□□□ -2
HOXA4Q00056 AL139156.1-201ENST00000412785 841 ntBASIC2.57□□□□□ -2
HOXA4Q00056 POLR2KP2-201ENST00000438155 177 ntBASIC2.57□□□□□ -2
HOXA4Q00056 RNA5SP112-201ENST00000515937 99 ntBASIC2.57□□□□□ -2
HOXA4Q00056 AC093331.1-201ENST00000521474 169 ntBASIC2.57□□□□□ -2
HOXA4Q00056 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC2.57□□□□□ -2
HOXA4Q00056 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.57□□□□□ -2
HOXA4Q00056 AC107294.3-201ENST00000609211 526 ntBASIC2.57□□□□□ -2
HOXA4Q00056 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.57□□□□□ -2
HOXA4Q00056 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.57□□□□□ -2
HOXA4Q00056 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.57□□□□□ -2
HOXA4Q00056 AC090517.3-201ENST00000625170 141 ntBASIC2.57□□□□□ -2
HOXA4Q00056 AC073476.4-201ENST00000628409 72 ntBASIC2.57□□□□□ -2
HOXA4Q00056 MIR3674-201ENST00000636576 68 ntBASIC2.57□□□□□ -2
HOXA4Q00056 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.57□□□□□ -2
HOXA4Q00056 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
HOXA4Q00056 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.56□□□□□ -2
HOXA4Q00056 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.56□□□□□ -2
HOXA4Q00056 MIR410-201ENST00000362222 80 ntBASIC2.56□□□□□ -2
HOXA4Q00056 RNU1-72P-201ENST00000362976 153 ntBASIC2.56□□□□□ -2
HOXA4Q00056 Y_RNA.117-201ENST00000363294 101 ntBASIC2.56□□□□□ -2
HOXA4Q00056 RNU6-454P-201ENST00000364292 107 ntBASIC2.56□□□□□ -2
HOXA4Q00056 SNORD32B-201ENST00000364460 84 ntBASIC2.56□□□□□ -2
HOXA4Q00056 Y_RNA.274-201ENST00000364714 101 ntBASIC2.56□□□□□ -2
HOXA4Q00056 SNORD15B-201ENST00000384714 146 ntBASIC2.56□□□□□ -2
HOXA4Q00056 Y_RNA.597-201ENST00000410463 100 ntBASIC2.56□□□□□ -2
HOXA4Q00056 RNA5SP475-201ENST00000410568 110 ntBASIC2.56□□□□□ -2
HOXA4Q00056 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms