Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.78□□□□□ -2.12
COL4A4P53420 RNU7-169P-201ENST00000459456 61 ntBASIC1.78□□□□□ -2.12
COL4A4P53420 MTND3P25-201ENST00000509243 135 ntBASIC1.78□□□□□ -2.12
COL4A4P53420 AC096745.1-201ENST00000509945 370 ntBASIC1.78□□□□□ -2.12
COL4A4P53420 AC025755.1-201ENST00000521306 278 ntBASIC1.78□□□□□ -2.12
COL4A4P53420 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.78□□□□□ -2.12
COL4A4P53420 AP003733.2-201ENST00000529409 171 ntBASIC1.78□□□□□ -2.12
COL4A4P53420 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC1.78□□□□□ -2.12
COL4A4P53420 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC1.78□□□□□ -2.12
COL4A4P53420 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.78□□□□□ -2.12
COL4A4P53420 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC1.78□□□□□ -2.12
COL4A4P53420 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC1.78□□□□□ -2.12
COL4A4P53420 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC1.78□□□□□ -2.12
COL4A4P53420 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC1.78□□□□□ -2.12
COL4A4P53420 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.78□□□□□ -2.12
COL4A4P53420 MIR4273-201ENST00000582824 84 ntBASIC1.78□□□□□ -2.12
COL4A4P53420 AL355877.2-201ENST00000603670 358 ntBASIC1.78□□□□□ -2.12
COL4A4P53420 AC025588.3-201ENST00000604182 274 ntBASIC1.78□□□□□ -2.12
COL4A4P53420 AC012443.1-201ENST00000605605 231 ntBASIC1.78□□□□□ -2.12
COL4A4P53420 MIR6130-201ENST00000619419 109 ntBASIC1.78□□□□□ -2.12
COL4A4P53420 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC1.78□□□□□ -2.12
COL4A4P53420 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
COL4A4P53420 RNY1P16-201ENST00000363063 111 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 Y_RNA.106-201ENST00000363189 100 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 Y_RNA.458-201ENST00000384240 102 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 MIR215-201ENST00000384858 110 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 MIR625-201ENST00000385047 85 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 RNU6-1093P-201ENST00000391194 107 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 AL030996.1-201ENST00000411430 235 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 MTCO3P19-201ENST00000415864 321 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.77□□□□□ -2.13
COL4A4P53420 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC1.77□□□□□ -2.13
COL4A4P53420 AC234775.1-201ENST00000454247 670 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC1.77□□□□□ -2.13
COL4A4P53420 RPL39P38-201ENST00000467018 153 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 RPS15AP34-201ENST00000487776 387 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 AP005660.1-201ENST00000522972 293 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 ERHP1-201ENST00000523006 310 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
COL4A4P53420 SNRPGP16-201ENST00000533275 226 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC1.77□□□□□ -2.13
COL4A4P53420 ZNF192P1-203ENST00000565888 810 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 CPDP1-201ENST00000579660 283 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 MIR5188-201ENST00000583467 113 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 VN1R91P-201ENST00000594377 169 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 AC009779.6-201ENST00000603972 165 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 AL158032.1-201ENST00000605401 106 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 MIR4496-201ENST00000635896 61 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
COL4A4P53420 AC068700.1-201ENST00000565862 3754 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 Y_RNA.20-201ENST00000362479 113 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 Y_RNA.214-201ENST00000364201 112 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 Y_RNA.539-201ENST00000384635 107 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 SNORA69.1-201ENST00000390904 137 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 RNU4-61P-201ENST00000411243 107 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 RNU6-607P-201ENST00000411283 108 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 AL160275.3-201ENST00000423876 471 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC1.77□□□□□ -2.13
COL4A4P53420 NDUFB1P2-201ENST00000449477 176 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC1.77□□□□□ -2.13
COL4A4P53420 TRBVB-201ENST00000477100 408 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 RNU6-182P-201ENST00000516970 105 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 RNU6-570P-201ENST00000517051 105 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
COL4A4P53420 AP006587.4-201ENST00000526053 529 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 AC004792.1-201ENST00000614523 137 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 AL157834.3-201ENST00000615543 103 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 AC137590.2-201ENST00000619709 240 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 MIR4275-201ENST00000636486 87 ntBASIC1.77□□□□□ -2.13
COL4A4P53420 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.76□□□□□ -2.13
COL4A4P53420 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.76□□□□□ -2.13
COL4A4P53420 Y_RNA.65-201ENST00000362846 100 ntBASIC1.76□□□□□ -2.13
COL4A4P53420 Y_RNA.117-201ENST00000363294 101 ntBASIC1.76□□□□□ -2.13
COL4A4P53420 RNU6-715P-201ENST00000365204 103 ntBASIC1.76□□□□□ -2.13
COL4A4P53420 MIR598-201ENST00000384868 97 ntBASIC1.76□□□□□ -2.13
COL4A4P53420 RNU4-65P-201ENST00000410473 140 ntBASIC1.76□□□□□ -2.13
COL4A4P53420 RNU2-38P-201ENST00000410856 79 ntBASIC1.76□□□□□ -2.13
COL4A4P53420 RNU2-71P-201ENST00000411395 189 ntBASIC1.76□□□□□ -2.13
COL4A4P53420 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.76□□□□□ -2.13
COL4A4P53420 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC1.76□□□□□ -2.13
COL4A4P53420 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.76□□□□□ -2.13
COL4A4P53420 PRELID3BP1-201ENST00000457142 540 ntBASIC1.76□□□□□ -2.13
COL4A4P53420 FO393415.2-201ENST00000480085 343 ntBASIC1.76□□□□□ -2.13
COL4A4P53420 AC016065.2-201ENST00000514530 444 ntBASIC1.76□□□□□ -2.13
COL4A4P53420 SNORA31.3-201ENST00000516029 96 ntBASIC1.76□□□□□ -2.13
COL4A4P53420 RNU6-1338P-201ENST00000516328 91 ntBASIC1.76□□□□□ -2.13
COL4A4P53420 RNU6-897P-201ENST00000517135 105 ntBASIC1.76□□□□□ -2.13
COL4A4P53420 AC069113.1-201ENST00000517763 267 ntBASIC1.76□□□□□ -2.13
COL4A4P53420 AC104576.1-201ENST00000524225 88 ntBASIC1.76□□□□□ -2.13
COL4A4P53420 AC025423.5-201ENST00000550230 219 ntBASIC1.76□□□□□ -2.13
COL4A4P53420 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC1.76□□□□□ -2.13
COL4A4P53420 AC015720.1-201ENST00000565251 277 ntBASIC1.76□□□□□ -2.13
COL4A4P53420 AC008669.1-201ENST00000565823 2178 ntBASIC1.76□□□□□ -2.13
COL4A4P53420 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC1.76□□□□□ -2.13
COL4A4P53420 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.75□□□□□ -2.13
COL4A4P53420 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.75□□□□□ -2.13
COL4A4P53420 AL157777.2-201ENST00000258070 137 ntBASIC1.75□□□□□ -2.13
COL4A4P53420 Y_RNA.19-201ENST00000362462 99 ntBASIC1.75□□□□□ -2.13
COL4A4P53420 RNA5SP295-201ENST00000362655 121 ntBASIC1.75□□□□□ -2.13
COL4A4P53420 Y_RNA.60-201ENST00000362831 98 ntBASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 145.5 ms