Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 Z82188.1-201ENST00000436709 154 ntBASIC2□□□□□ -2.09
LHX1P48742 AL035666.1-201ENST00000446195 348 ntBASIC2□□□□□ -2.09
LHX1P48742 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC2□□□□□ -2.09
LHX1P48742 AC055731.1-201ENST00000474387 401 ntBASIC2□□□□□ -2.09
LHX1P48742 AC116353.2-201ENST00000505332 712 ntBASIC2□□□□□ -2.09
LHX1P48742 AC026782.1-201ENST00000512952 449 ntBASIC2□□□□□ -2.09
LHX1P48742 MIR514B-201ENST00000516774 80 ntBASIC2□□□□□ -2.09
LHX1P48742 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC2□□□□□ -2.09
LHX1P48742 MIR4801-201ENST00000582704 82 ntBASIC2□□□□□ -2.09
LHX1P48742 AC010928.2-201ENST00000588017 287 ntBASIC2□□□□□ -2.09
LHX1P48742 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2□□□□□ -2.09
LHX1P48742 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2□□□□□ -2.09
LHX1P48742 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.99□□□□□ -2.09
LHX1P48742 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.99□□□□□ -2.09
LHX1P48742 SNORD115-32-201ENST00000364079 82 ntBASIC1.99□□□□□ -2.09
LHX1P48742 RNU6-842P-201ENST00000384269 107 ntBASIC1.99□□□□□ -2.09
LHX1P48742 U3.40-201ENST00000408706 208 ntBASIC1.99□□□□□ -2.09
LHX1P48742 AC243428.1-201ENST00000421099 264 ntBASIC1.99□□□□□ -2.09
LHX1P48742 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.99□□□□□ -2.09
LHX1P48742 AC007677.1-201ENST00000445757 515 ntBASIC1.99□□□□□ -2.09
LHX1P48742 MTND3P10-201ENST00000450967 341 ntBASIC1.99□□□□□ -2.09
LHX1P48742 snoU13.30-201ENST00000458951 104 ntBASIC1.99□□□□□ -2.09
LHX1P48742 AC007215.1-201ENST00000464893 276 ntBASIC1.99□□□□□ -2.09
LHX1P48742 TOMM22P6-201ENST00000465035 409 ntBASIC1.99□□□□□ -2.09
LHX1P48742 RNU2-44P-201ENST00000516795 194 ntBASIC1.99□□□□□ -2.09
LHX1P48742 DEFB131C-201ENST00000528817 165 ntBASIC1.99□□□□□ -2.09
LHX1P48742 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.99□□□□□ -2.09
LHX1P48742 DEFB122-202ENST00000569013 197 ntBASIC1.99□□□□□ -2.09
LHX1P48742 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.99□□□□□ -2.09
LHX1P48742 AC011494.1-201ENST00000596454 237 ntBASIC1.99□□□□□ -2.09
LHX1P48742 MIR6845-201ENST00000613182 61 ntBASIC1.99□□□□□ -2.09
LHX1P48742 WT1-AS_8.1-201ENST00000615200 275 ntBASIC1.99□□□□□ -2.09
LHX1P48742 TPTEP1-208ENST00000636884 213 ntBASIC1.99□□□□□ -2.09
LHX1P48742 ZNF299P-201ENST00000406845 1804 ntBASIC1.98□□□□□ -2.09
LHX1P48742 Y_RNA.88-201ENST00000363029 99 ntBASIC1.98□□□□□ -2.09
LHX1P48742 SNORD31B-201ENST00000364977 69 ntBASIC1.98□□□□□ -2.09
LHX1P48742 SNORD81.2-201ENST00000365153 76 ntBASIC1.98□□□□□ -2.09
LHX1P48742 Y_RNA.332-201ENST00000365271 113 ntBASIC1.98□□□□□ -2.09
LHX1P48742 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.98□□□□□ -2.09
LHX1P48742 U8.10-201ENST00000384260 133 ntBASIC1.98□□□□□ -2.09
LHX1P48742 Y_RNA.473-201ENST00000384333 102 ntBASIC1.98□□□□□ -2.09
LHX1P48742 Y_RNA.482-201ENST00000384377 111 ntBASIC1.98□□□□□ -2.09
LHX1P48742 MIR487A-201ENST00000385009 80 ntBASIC1.98□□□□□ -2.09
LHX1P48742 MIR549A-201ENST00000385268 96 ntBASIC1.98□□□□□ -2.09
LHX1P48742 MIR320B2-201ENST00000408479 138 ntBASIC1.98□□□□□ -2.09
LHX1P48742 Y_RNA.594-201ENST00000410373 140 ntBASIC1.98□□□□□ -2.09
LHX1P48742 RNU6-1050P-201ENST00000410388 107 ntBASIC1.98□□□□□ -2.09
LHX1P48742 NCOR1P3-201ENST00000420479 303 ntBASIC1.98□□□□□ -2.09
LHX1P48742 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.98□□□□□ -2.09
LHX1P48742 BX510359.4-201ENST00000423750 193 ntBASIC1.98□□□□□ -2.09
LHX1P48742 AL591806.2-201ENST00000433122 173 ntBASIC1.98□□□□□ -2.09
LHX1P48742 snoU13.23-201ENST00000458863 104 ntBASIC1.98□□□□□ -2.09
LHX1P48742 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.98□□□□□ -2.09
LHX1P48742 Y_RNA.708-201ENST00000516950 96 ntBASIC1.98□□□□□ -2.09
LHX1P48742 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.98□□□□□ -2.09
LHX1P48742 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.98□□□□□ -2.09
LHX1P48742 MIR5006-201ENST00000583027 110 ntBASIC1.98□□□□□ -2.09
LHX1P48742 MIR4448-201ENST00000584360 86 ntBASIC1.98□□□□□ -2.09
LHX1P48742 SNRPGP20-201ENST00000604477 205 ntBASIC1.98□□□□□ -2.09
LHX1P48742 RMST_6.1-201ENST00000611980 203 ntBASIC1.98□□□□□ -2.09
LHX1P48742 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.98□□□□□ -2.09
LHX1P48742 TCL6_2.1-201ENST00000615162 119 ntBASIC1.98□□□□□ -2.09
LHX1P48742 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.98□□□□□ -2.09
LHX1P48742 AC099654.5-201ENST00000636479 350 ntBASIC1.98□□□□□ -2.09
LHX1P48742 AP000553.5-201ENST00000641933 54 ntBASIC1.98□□□□□ -2.09
LHX1P48742 MTND4P1-201ENST00000457501 1466 ntBASIC1.98□□□□□ -2.09
LHX1P48742 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.98□□□□□ -2.09
LHX1P48742 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
LHX1P48742 Y_RNA.2-201ENST00000362330 96 ntBASIC1.97□□□□□ -2.09
LHX1P48742 RNU6-1164P-201ENST00000364428 107 ntBASIC1.97□□□□□ -2.09
LHX1P48742 SNORA16B-201ENST00000364674 135 ntBASIC1.97□□□□□ -2.09
LHX1P48742 RNU6-160P-201ENST00000384591 107 ntBASIC1.97□□□□□ -2.09
LHX1P48742 MIR153-2-201ENST00000385225 87 ntBASIC1.97□□□□□ -2.09
LHX1P48742 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.97□□□□□ -2.09
LHX1P48742 AC123900.1-201ENST00000420390 96 ntBASIC1.97□□□□□ -2.09
LHX1P48742 AC004386.2-201ENST00000441858 148 ntBASIC1.97□□□□□ -2.09
LHX1P48742 SNRPEP8-201ENST00000442866 260 ntBASIC1.97□□□□□ -2.09
LHX1P48742 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC1.97□□□□□ -2.09
LHX1P48742 RPS27P21-201ENST00000486977 252 ntBASIC1.97□□□□□ -2.09
LHX1P48742 HMGN1P12-201ENST00000499125 195 ntBASIC1.97□□□□□ -2.09
LHX1P48742 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.97□□□□□ -2.09
LHX1P48742 Y_RNA.691-201ENST00000516611 103 ntBASIC1.97□□□□□ -2.09
LHX1P48742 RNA5SP54-201ENST00000516951 92 ntBASIC1.97□□□□□ -2.09
LHX1P48742 AL590705.4-201ENST00000532209 134 ntBASIC1.97□□□□□ -2.09
LHX1P48742 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.97□□□□□ -2.09
LHX1P48742 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.97□□□□□ -2.09
LHX1P48742 AC243960.4-201ENST00000600532 288 ntBASIC1.97□□□□□ -2.09
LHX1P48742 AC130454.1-201ENST00000622948 401 ntBASIC1.97□□□□□ -2.09
LHX1P48742 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
LHX1P48742 ZNF204P-201ENST00000416749 2397 ntBASIC1.96□□□□□ -2.09
LHX1P48742 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.96□□□□□ -2.09
LHX1P48742 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
LHX1P48742 RNU1-58P-201ENST00000362413 163 ntBASIC1.96□□□□□ -2.1
LHX1P48742 Y_RNA.48-201ENST00000362710 103 ntBASIC1.96□□□□□ -2.1
LHX1P48742 RNU6-595P-201ENST00000363944 107 ntBASIC1.96□□□□□ -2.1
LHX1P48742 Y_RNA.319-201ENST00000365138 92 ntBASIC1.96□□□□□ -2.1
LHX1P48742 Y_RNA.490-201ENST00000384413 102 ntBASIC1.96□□□□□ -2.1
LHX1P48742 RNA5SP465-201ENST00000391195 109 ntBASIC1.96□□□□□ -2.1
LHX1P48742 RNA5SP450-201ENST00000411206 102 ntBASIC1.96□□□□□ -2.1
LHX1P48742 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.96□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 339.7 ms