Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 RNU6-862P-201ENST00000362804 105 ntBASIC1.28□□□□□ -2.2
RFX3P48380 RNU5B-2P-201ENST00000363036 113 ntBASIC1.28□□□□□ -2.2
RFX3P48380 Y_RNA.238-201ENST00000364441 102 ntBASIC1.28□□□□□ -2.2
RFX3P48380 SNORD1A-201ENST00000364968 72 ntBASIC1.28□□□□□ -2.2
RFX3P48380 RNU6-1286P-201ENST00000383871 107 ntBASIC1.28□□□□□ -2.2
RFX3P48380 RNU6-203P-201ENST00000384038 104 ntBASIC1.28□□□□□ -2.2
RFX3P48380 SNORA29-201ENST00000384183 140 ntBASIC1.28□□□□□ -2.2
RFX3P48380 MIR514A2-201ENST00000385131 88 ntBASIC1.28□□□□□ -2.2
RFX3P48380 MIR514A3-201ENST00000385132 88 ntBASIC1.28□□□□□ -2.2
RFX3P48380 MIR548B-201ENST00000385247 97 ntBASIC1.28□□□□□ -2.2
RFX3P48380 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
RFX3P48380 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.28□□□□□ -2.2
RFX3P48380 RNU6-648P-201ENST00000410190 107 ntBASIC1.28□□□□□ -2.2
RFX3P48380 RPL30P13-201ENST00000418873 348 ntBASIC1.28□□□□□ -2.2
RFX3P48380 EBAG9P1-201ENST00000418955 543 ntBASIC1.28□□□□□ -2.2
RFX3P48380 USP9YP28-201ENST00000435142 589 ntBASIC1.28□□□□□ -2.2
RFX3P48380 JTBP1-201ENST00000441314 247 ntBASIC1.28□□□□□ -2.2
RFX3P48380 ATP5J2P3-201ENST00000451550 258 ntBASIC1.28□□□□□ -2.2
RFX3P48380 MTND3P16-201ENST00000452205 344 ntBASIC1.28□□□□□ -2.2
RFX3P48380 snoU13.30-201ENST00000458951 104 ntBASIC1.28□□□□□ -2.2
RFX3P48380 AC010531.2-201ENST00000465012 153 ntBASIC1.28□□□□□ -2.2
RFX3P48380 RPL39P5-202ENST00000512505 151 ntBASIC1.28□□□□□ -2.2
RFX3P48380 RNU6-835P-201ENST00000516974 104 ntBASIC1.28□□□□□ -2.2
RFX3P48380 RNU6-902P-201ENST00000517212 91 ntBASIC1.28□□□□□ -2.2
RFX3P48380 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.28□□□□□ -2.2
RFX3P48380 AL161670.1-201ENST00000554348 137 ntBASIC1.28□□□□□ -2.2
RFX3P48380 FGF7P1-201ENST00000582820 288 ntBASIC1.28□□□□□ -2.2
RFX3P48380 NBR2-204ENST00000587322 63 ntBASIC1.28□□□□□ -2.2
RFX3P48380 AC083806.3-201ENST00000614016 455 ntBASIC1.28□□□□□ -2.2
RFX3P48380 AL158209.2-201ENST00000619266 216 ntBASIC1.28□□□□□ -2.2
RFX3P48380 AC124864.2-201ENST00000624736 186 ntBASIC1.28□□□□□ -2.2
RFX3P48380 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
RFX3P48380 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.27□□□□□ -2.21
RFX3P48380 U8.1-201ENST00000362843 134 ntBASIC1.27□□□□□ -2.21
RFX3P48380 RNU6-1317P-201ENST00000364582 104 ntBASIC1.27□□□□□ -2.21
RFX3P48380 RNU4-20P-201ENST00000365601 151 ntBASIC1.27□□□□□ -2.21
RFX3P48380 SNORD116-1-201ENST00000384335 95 ntBASIC1.27□□□□□ -2.21
RFX3P48380 RNU6-360P-201ENST00000390944 104 ntBASIC1.27□□□□□ -2.21
RFX3P48380 MTCO3P40-201ENST00000392516 676 ntBASIC1.27□□□□□ -2.21
RFX3P48380 RNU2-66P-201ENST00000410650 161 ntBASIC1.27□□□□□ -2.21
RFX3P48380 RNA5SP494-201ENST00000410653 129 ntBASIC1.27□□□□□ -2.21
RFX3P48380 Z82205.1-201ENST00000428456 297 ntBASIC1.27□□□□□ -2.21
RFX3P48380 FTH1P12-201ENST00000432137 551 ntBASIC1.27□□□□□ -2.21
RFX3P48380 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC1.27□□□□□ -2.21
RFX3P48380 AC245517.4-201ENST00000448601 281 ntBASIC1.27□□□□□ -2.21
RFX3P48380 RNU7-95P-201ENST00000459222 64 ntBASIC1.27□□□□□ -2.21
RFX3P48380 HMGN2P9-201ENST00000476875 229 ntBASIC1.27□□□□□ -2.21
RFX3P48380 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.27□□□□□ -2.21
RFX3P48380 AC067942.3-201ENST00000512025 362 ntBASIC1.27□□□□□ -2.21
RFX3P48380 RNA5SP445-201ENST00000515889 115 ntBASIC1.27□□□□□ -2.21
RFX3P48380 RNU6-1038P-201ENST00000516516 104 ntBASIC1.27□□□□□ -2.21
RFX3P48380 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.27□□□□□ -2.21
RFX3P48380 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.27□□□□□ -2.21
RFX3P48380 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.27□□□□□ -2.21
RFX3P48380 AC069114.2-201ENST00000604699 304 ntBASIC1.27□□□□□ -2.21
RFX3P48380 AC004492.1-201ENST00000607036 742 ntBASIC1.27□□□□□ -2.21
RFX3P48380 AL121757.2-201ENST00000611223 313 ntBASIC1.27□□□□□ -2.21
RFX3P48380 Z99129.1-201ENST00000612510 255 ntBASIC1.27□□□□□ -2.21
RFX3P48380 AC005562.2-201ENST00000618264 111 ntBASIC1.27□□□□□ -2.21
RFX3P48380 AC137590.2-201ENST00000619709 240 ntBASIC1.27□□□□□ -2.21
RFX3P48380 AC068792.1-201ENST00000621354 417 ntBASIC1.27□□□□□ -2.21
RFX3P48380 MIR8063-201ENST00000621930 81 ntBASIC1.27□□□□□ -2.21
RFX3P48380 FER-210ENST00000628534 558 ntTSL 5 BASIC1.27□□□□□ -2.21
RFX3P48380 AC100821.1-201ENST00000523153 2479 ntBASIC1.27□□□□□ -2.21
RFX3P48380 AC010615.1-201ENST00000594254 1764 ntBASIC1.26□□□□□ -2.21
RFX3P48380 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
RFX3P48380 MIR26B-201ENST00000362251 77 ntBASIC1.26□□□□□ -2.21
RFX3P48380 SNORA18.2-201ENST00000383865 132 ntBASIC1.26□□□□□ -2.21
RFX3P48380 Y_RNA.409-201ENST00000383990 98 ntBASIC1.26□□□□□ -2.21
RFX3P48380 SNORD26-201ENST00000384147 75 ntBASIC1.26□□□□□ -2.21
RFX3P48380 MIR520A-201ENST00000384862 85 ntBASIC1.26□□□□□ -2.21
RFX3P48380 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.26□□□□□ -2.21
RFX3P48380 RNA5SP247-201ENST00000411181 105 ntBASIC1.26□□□□□ -2.21
RFX3P48380 SNRPEP10-201ENST00000420249 274 ntBASIC1.26□□□□□ -2.21
RFX3P48380 MTND3P9-201ENST00000429526 346 ntBASIC1.26□□□□□ -2.21
RFX3P48380 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC1.26□□□□□ -2.21
RFX3P48380 MTCO1P29-201ENST00000496868 288 ntBASIC1.26□□□□□ -2.21
RFX3P48380 AC107401.1-201ENST00000503426 685 ntBASIC1.26□□□□□ -2.21
RFX3P48380 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC1.26□□□□□ -2.21
RFX3P48380 TRMT112P2-201ENST00000512910 132 ntBASIC1.26□□□□□ -2.21
RFX3P48380 Y_RNA.693-201ENST00000516641 110 ntBASIC1.26□□□□□ -2.21
RFX3P48380 RNU6-856P-201ENST00000516959 98 ntBASIC1.26□□□□□ -2.21
RFX3P48380 AC104576.1-201ENST00000524225 88 ntBASIC1.26□□□□□ -2.21
RFX3P48380 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
RFX3P48380 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
RFX3P48380 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.26□□□□□ -2.21
RFX3P48380 MTND1P15-201ENST00000579262 949 ntBASIC1.26□□□□□ -2.21
RFX3P48380 CPDP1-201ENST00000579660 283 ntBASIC1.26□□□□□ -2.21
RFX3P48380 MIR4781-201ENST00000585250 76 ntBASIC1.26□□□□□ -2.21
RFX3P48380 AC104458.1-201ENST00000608243 463 ntBASIC1.26□□□□□ -2.21
RFX3P48380 MIR8076-201ENST00000611401 83 ntBASIC1.26□□□□□ -2.21
RFX3P48380 TCL6_2.1-201ENST00000615162 119 ntBASIC1.26□□□□□ -2.21
RFX3P48380 AL359880.1-201ENST00000621879 266 ntBASIC1.26□□□□□ -2.21
RFX3P48380 OR5AK4P-201ENST00000635912 903 ntBASIC1.26□□□□□ -2.21
RFX3P48380 ICE2P2-201ENST00000483823 2787 ntBASIC1.26□□□□□ -2.21
RFX3P48380 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
RFX3P48380 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.25□□□□□ -2.21
RFX3P48380 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.25□□□□□ -2.21
RFX3P48380 RNU6-1019P-201ENST00000364424 107 ntBASIC1.25□□□□□ -2.21
RFX3P48380 RNU6-968P-201ENST00000384076 107 ntBASIC1.25□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 126 ms