Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 RNU6-17P-201ENST00000384245 107 ntBASIC2.19□□□□□ -2.06
MSH2P43246 RNU6-18P-201ENST00000384527 107 ntBASIC2.19□□□□□ -2.06
MSH2P43246 Y_RNA.524-201ENST00000384564 100 ntBASIC2.19□□□□□ -2.06
MSH2P43246 Y_RNA.561-201ENST00000384694 100 ntBASIC2.19□□□□□ -2.06
MSH2P43246 MIR153-2-201ENST00000385225 87 ntBASIC2.19□□□□□ -2.06
MSH2P43246 MT-TD-201ENST00000387419 68 ntBASIC2.19□□□□□ -2.06
MSH2P43246 SNORA12.2-201ENST00000391040 156 ntBASIC2.19□□□□□ -2.06
MSH2P43246 SNORA48.3-201ENST00000391081 134 ntBASIC2.19□□□□□ -2.06
MSH2P43246 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC2.19□□□□□ -2.06
MSH2P43246 BX510359.4-201ENST00000423750 193 ntBASIC2.19□□□□□ -2.06
MSH2P43246 AC027124.2-201ENST00000428249 105 ntBASIC2.19□□□□□ -2.06
MSH2P43246 MTCO3P29-201ENST00000432119 779 ntBASIC2.19□□□□□ -2.06
MSH2P43246 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC2.19□□□□□ -2.06
MSH2P43246 AL021397.1-201ENST00000451806 248 ntBASIC2.19□□□□□ -2.06
MSH2P43246 AC025033.1-201ENST00000463883 194 ntBASIC2.19□□□□□ -2.06
MSH2P43246 AC097473.1-201ENST00000508142 408 ntBASIC2.19□□□□□ -2.06
MSH2P43246 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.19□□□□□ -2.06
MSH2P43246 MTND3P22-201ENST00000510932 243 ntBASIC2.19□□□□□ -2.06
MSH2P43246 AC008413.1-201ENST00000511864 177 ntBASIC2.19□□□□□ -2.06
MSH2P43246 RNU6-1098P-201ENST00000516772 96 ntBASIC2.19□□□□□ -2.06
MSH2P43246 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC2.19□□□□□ -2.06
MSH2P43246 AP005660.1-201ENST00000522972 293 ntBASIC2.19□□□□□ -2.06
MSH2P43246 DEFB131C-201ENST00000528817 165 ntBASIC2.19□□□□□ -2.06
MSH2P43246 MIR5002-201ENST00000584713 97 ntBASIC2.19□□□□□ -2.06
MSH2P43246 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.19□□□□□ -2.06
MSH2P43246 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC2.19□□□□□ -2.06
MSH2P43246 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC2.19□□□□□ -2.06
MSH2P43246 MIR6132-201ENST00000622083 109 ntBASIC2.19□□□□□ -2.06
MSH2P43246 MTND4LP32-201ENST00000636111 270 ntBASIC2.19□□□□□ -2.06
MSH2P43246 AC008555.8-201ENST00000623602 2168 ntBASIC2.19□□□□□ -2.06
MSH2P43246 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
MSH2P43246 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.19□□□□□ -2.06
MSH2P43246 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
MSH2P43246 RNU1-76P-201ENST00000362903 159 ntBASIC2.18□□□□□ -2.06
MSH2P43246 RNY1P16-201ENST00000363063 111 ntBASIC2.18□□□□□ -2.06
MSH2P43246 SNORD115-8-201ENST00000363856 82 ntBASIC2.18□□□□□ -2.06
MSH2P43246 SNORD115-38-201ENST00000365037 82 ntBASIC2.18□□□□□ -2.06
MSH2P43246 SNORA18.2-201ENST00000383865 132 ntBASIC2.18□□□□□ -2.06
MSH2P43246 SNORD116-29-201ENST00000384516 83 ntBASIC2.18□□□□□ -2.06
MSH2P43246 MIR549A-201ENST00000385268 96 ntBASIC2.18□□□□□ -2.06
MSH2P43246 MTCYBP4-201ENST00000401524 249 ntBASIC2.18□□□□□ -2.06
MSH2P43246 AL353997.1-201ENST00000432936 108 ntBASIC2.18□□□□□ -2.06
MSH2P43246 AL353689.1-201ENST00000438895 199 ntBASIC2.18□□□□□ -2.06
MSH2P43246 SNRPEP8-201ENST00000442866 260 ntBASIC2.18□□□□□ -2.06
MSH2P43246 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.18□□□□□ -2.06
MSH2P43246 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC2.18□□□□□ -2.06
MSH2P43246 Y_RNA.632-201ENST00000459189 102 ntBASIC2.18□□□□□ -2.06
MSH2P43246 RNU6-991P-201ENST00000516168 107 ntBASIC2.18□□□□□ -2.06
MSH2P43246 RNA5SP200-201ENST00000516360 103 ntBASIC2.18□□□□□ -2.06
MSH2P43246 RNA5SP281-201ENST00000516504 135 ntBASIC2.18□□□□□ -2.06
MSH2P43246 AC093027.1-201ENST00000546698 429 ntBASIC2.18□□□□□ -2.06
MSH2P43246 AC026470.2-201ENST00000561492 181 ntBASIC2.18□□□□□ -2.06
MSH2P43246 AC002984.1-201ENST00000591692 448 ntBASIC2.18□□□□□ -2.06
MSH2P43246 AC005562.2-201ENST00000618264 111 ntBASIC2.18□□□□□ -2.06
MSH2P43246 AL359851.1-201ENST00000569460 4997 ntBASIC2.18□□□□□ -2.06
MSH2P43246 BX322639.1-202ENST00000423987 2213 ntBASIC2.17□□□□□ -2.06
MSH2P43246 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.17□□□□□ -2.06
MSH2P43246 Y_RNA.319-201ENST00000365138 92 ntBASIC2.17□□□□□ -2.06
MSH2P43246 RNY4P36-201ENST00000391116 96 ntBASIC2.17□□□□□ -2.06
MSH2P43246 SNORA75.6-201ENST00000391318 127 ntBASIC2.17□□□□□ -2.06
MSH2P43246 AL357139.1-201ENST00000407792 426 ntBASIC2.17□□□□□ -2.06
MSH2P43246 Y_RNA.604-201ENST00000410574 102 ntBASIC2.17□□□□□ -2.06
MSH2P43246 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC2.17□□□□□ -2.06
MSH2P43246 RPL23AP3-201ENST00000453844 468 ntBASIC2.17□□□□□ -2.06
MSH2P43246 Y_RNA.653-201ENST00000459091 95 ntBASIC2.17□□□□□ -2.06
MSH2P43246 TOMM22P6-201ENST00000465035 409 ntBASIC2.17□□□□□ -2.06
MSH2P43246 RPS23P5-201ENST00000495419 428 ntBASIC2.17□□□□□ -2.06
MSH2P43246 AC093259.1-201ENST00000509755 300 ntBASIC2.17□□□□□ -2.06
MSH2P43246 RNU5F-4P-201ENST00000516581 114 ntBASIC2.17□□□□□ -2.06
MSH2P43246 RNU6-1198P-201ENST00000516904 67 ntBASIC2.17□□□□□ -2.06
MSH2P43246 RNA5SP364-201ENST00000516938 78 ntBASIC2.17□□□□□ -2.06
MSH2P43246 RNA5SP54-201ENST00000516951 92 ntBASIC2.17□□□□□ -2.06
MSH2P43246 RNU6-58P-201ENST00000517143 103 ntBASIC2.17□□□□□ -2.06
MSH2P43246 RAB11AP2-201ENST00000545905 639 ntBASIC2.17□□□□□ -2.06
MSH2P43246 AC027288.2-201ENST00000553028 243 ntBASIC2.17□□□□□ -2.06
MSH2P43246 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.17□□□□□ -2.06
MSH2P43246 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.17□□□□□ -2.06
MSH2P43246 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC2.17□□□□□ -2.06
MSH2P43246 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.17□□□□□ -2.06
MSH2P43246 AC009487.4-201ENST00000624969 3585 ntBASIC2.17□□□□□ -2.06
MSH2P43246 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.16□□□□□ -2.06
MSH2P43246 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.16□□□□□ -2.06
MSH2P43246 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.16□□□□□ -2.06
MSH2P43246 RNU4-73P-201ENST00000363164 141 ntBASIC2.16□□□□□ -2.06
MSH2P43246 Y_RNA.259-201ENST00000364619 101 ntBASIC2.16□□□□□ -2.06
MSH2P43246 MIR676-201ENST00000390702 67 ntBASIC2.16□□□□□ -2.06
MSH2P43246 RNU11-3P-201ENST00000391111 133 ntBASIC2.16□□□□□ -2.06
MSH2P43246 RNA5SP465-201ENST00000391195 109 ntBASIC2.16□□□□□ -2.06
MSH2P43246 MIR1283-2-201ENST00000408621 87 ntBASIC2.16□□□□□ -2.06
MSH2P43246 RNU4-53P-201ENST00000410828 140 ntBASIC2.16□□□□□ -2.06
MSH2P43246 RN7SKP284-201ENST00000411002 343 ntBASIC2.16□□□□□ -2.06
MSH2P43246 HMGN2P3-201ENST00000433603 273 ntBASIC2.16□□□□□ -2.06
MSH2P43246 RPL23AP50-201ENST00000434149 455 ntBASIC2.16□□□□□ -2.06
MSH2P43246 HMGN2P5-201ENST00000436882 273 ntBASIC2.16□□□□□ -2.06
MSH2P43246 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.16□□□□□ -2.06
MSH2P43246 HMGN2P18-201ENST00000450680 270 ntBASIC2.16□□□□□ -2.06
MSH2P43246 MTCO3P10-201ENST00000455912 772 ntBASIC2.16□□□□□ -2.06
MSH2P43246 RPL30P15-201ENST00000457129 321 ntBASIC2.16□□□□□ -2.06
MSH2P43246 ATP5EP1-201ENST00000510257 156 ntBASIC2.16□□□□□ -2.06
MSH2P43246 RNU2-44P-201ENST00000516795 194 ntBASIC2.16□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 117.1 ms