Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
HNF4AP41235 Y_RNA.5-201ENST00000362334 102 ntBASIC2.12□□□□□ -2.07
HNF4AP41235 Y_RNA.395-201ENST00000383945 109 ntBASIC2.12□□□□□ -2.07
HNF4AP41235 RNU6-1040P-201ENST00000383974 107 ntBASIC2.12□□□□□ -2.07
HNF4AP41235 AC244636.1-201ENST00000421152 228 ntBASIC2.12□□□□□ -2.07
HNF4AP41235 EIF4EP2-201ENST00000422816 654 ntBASIC2.12□□□□□ -2.07
HNF4AP41235 HMGN2P19-201ENST00000425149 265 ntBASIC2.12□□□□□ -2.07
HNF4AP41235 RPL23AP95-201ENST00000426806 265 ntBASIC2.12□□□□□ -2.07
HNF4AP41235 AC005534.2-201ENST00000431047 433 ntBASIC2.12□□□□□ -2.07
HNF4AP41235 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.12□□□□□ -2.07
HNF4AP41235 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.12□□□□□ -2.07
HNF4AP41235 AC022493.2-201ENST00000506122 481 ntBASIC2.12□□□□□ -2.07
HNF4AP41235 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC2.12□□□□□ -2.07
HNF4AP41235 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.12□□□□□ -2.07
HNF4AP41235 SNRPGP18-201ENST00000553000 214 ntBASIC2.12□□□□□ -2.07
HNF4AP41235 AC020661.2-201ENST00000560114 134 ntBASIC2.12□□□□□ -2.07
HNF4AP41235 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.12□□□□□ -2.07
HNF4AP41235 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC2.12□□□□□ -2.07
HNF4AP41235 AC009318.2-201ENST00000610917 651 ntBASIC2.12□□□□□ -2.07
HNF4AP41235 AL773524.1-201ENST00000614065 229 ntBASIC2.12□□□□□ -2.07
HNF4AP41235 uc_338.22-201ENST00000622722 187 ntBASIC2.12□□□□□ -2.07
HNF4AP41235 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.12□□□□□ -2.07
HNF4AP41235 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.11□□□□□ -2.07
HNF4AP41235 MTND5P9-201ENST00000503854 1755 ntBASIC2.11□□□□□ -2.07
HNF4AP41235 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
HNF4AP41235 Y_RNA.128-201ENST00000363391 112 ntBASIC2.11□□□□□ -2.07
HNF4AP41235 RNU6-1285P-201ENST00000363480 105 ntBASIC2.11□□□□□ -2.07
HNF4AP41235 RNU4-52P-201ENST00000384209 138 ntBASIC2.11□□□□□ -2.07
HNF4AP41235 Y_RNA.463-201ENST00000384271 102 ntBASIC2.11□□□□□ -2.07
HNF4AP41235 RNU6-308P-201ENST00000390957 107 ntBASIC2.11□□□□□ -2.07
HNF4AP41235 MIR1283-2-201ENST00000408621 87 ntBASIC2.11□□□□□ -2.07
HNF4AP41235 RNU2-40P-201ENST00000410833 196 ntBASIC2.11□□□□□ -2.07
HNF4AP41235 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC2.11□□□□□ -2.07
HNF4AP41235 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC2.11□□□□□ -2.07
HNF4AP41235 HMGN2P38-201ENST00000423806 265 ntBASIC2.11□□□□□ -2.07
HNF4AP41235 AL353997.1-201ENST00000432936 108 ntBASIC2.11□□□□□ -2.07
HNF4AP41235 RPL23AP50-201ENST00000434149 455 ntBASIC2.11□□□□□ -2.07
HNF4AP41235 AL137792.2-201ENST00000443484 235 ntBASIC2.11□□□□□ -2.07
HNF4AP41235 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
HNF4AP41235 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC2.11□□□□□ -2.07
HNF4AP41235 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC2.11□□□□□ -2.07
HNF4AP41235 RNU6-699P-201ENST00000517081 110 ntBASIC2.11□□□□□ -2.07
HNF4AP41235 HSPE1P4-201ENST00000550617 308 ntBASIC2.11□□□□□ -2.07
HNF4AP41235 AC007375.1-201ENST00000554513 578 ntBASIC2.11□□□□□ -2.07
HNF4AP41235 AC005899.2-201ENST00000584353 90 ntBASIC2.11□□□□□ -2.07
HNF4AP41235 B3GNTL1P2-201ENST00000603673 288 ntBASIC2.11□□□□□ -2.07
HNF4AP41235 CYP2C61P-201ENST00000604072 290 ntBASIC2.11□□□□□ -2.07
HNF4AP41235 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.11□□□□□ -2.07
HNF4AP41235 AC133104.2-201ENST00000615272 193 ntBASIC2.11□□□□□ -2.07
HNF4AP41235 AC134503.1-201ENST00000633048 54 ntBASIC2.11□□□□□ -2.07
HNF4AP41235 AL450472.1-202ENST00000637286 180 ntBASIC2.11□□□□□ -2.07
HNF4AP41235 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
HNF4AP41235 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC2.11□□□□□ -2.07
HNF4AP41235 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
HNF4AP41235 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
HNF4AP41235 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
HNF4AP41235 MTND4P1-201ENST00000457501 1466 ntBASIC2.1□□□□□ -2.07
HNF4AP41235 RNU6-1115P-201ENST00000362490 106 ntBASIC2.1□□□□□ -2.07
HNF4AP41235 RNU6-595P-201ENST00000363944 107 ntBASIC2.1□□□□□ -2.07
HNF4AP41235 Y_RNA.216-201ENST00000364205 93 ntBASIC2.1□□□□□ -2.07
HNF4AP41235 RNU6-1141P-201ENST00000364520 107 ntBASIC2.1□□□□□ -2.07
HNF4AP41235 Z98742.3-201ENST00000418637 326 ntBASIC2.1□□□□□ -2.07
HNF4AP41235 BX510359.4-201ENST00000423750 193 ntBASIC2.1□□□□□ -2.07
HNF4AP41235 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.1□□□□□ -2.07
HNF4AP41235 AP000889.1-201ENST00000530968 660 ntBASIC2.1□□□□□ -2.07
HNF4AP41235 AL356157.2-201ENST00000605122 111 ntBASIC2.1□□□□□ -2.07
HNF4AP41235 AC007742.2-201ENST00000618226 398 ntBASIC2.1□□□□□ -2.07
HNF4AP41235 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.1□□□□□ -2.07
HNF4AP41235 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC2.1□□□□□ -2.07
HNF4AP41235 CENPCP1-201ENST00000533085 2578 ntBASIC2.09□□□□□ -2.07
HNF4AP41235 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.09□□□□□ -2.07
HNF4AP41235 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.09□□□□□ -2.07
HNF4AP41235 RNU6-490P-201ENST00000362985 107 ntBASIC2.09□□□□□ -2.07
HNF4AP41235 RNY1P16-201ENST00000363063 111 ntBASIC2.09□□□□□ -2.07
HNF4AP41235 Y_RNA.99-201ENST00000363138 105 ntBASIC2.09□□□□□ -2.07
HNF4AP41235 RNU6-743P-201ENST00000364151 106 ntBASIC2.09□□□□□ -2.07
HNF4AP41235 RNU6-99P-201ENST00000364721 107 ntBASIC2.09□□□□□ -2.07
HNF4AP41235 SNORA36A-201ENST00000384221 132 ntBASIC2.09□□□□□ -2.07
HNF4AP41235 Y_RNA.496-201ENST00000384444 101 ntBASIC2.09□□□□□ -2.07
HNF4AP41235 Y_RNA.504-201ENST00000384481 104 ntBASIC2.09□□□□□ -2.07
HNF4AP41235 SNORA8-201ENST00000384574 139 ntBASIC2.09□□□□□ -2.07
HNF4AP41235 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
HNF4AP41235 MIR1302-11-201ENST00000408051 138 ntBASIC2.09□□□□□ -2.07
HNF4AP41235 MIR1302-9-201ENST00000408365 138 ntBASIC2.09□□□□□ -2.07
HNF4AP41235 MIR1302-10-201ENST00000408734 138 ntBASIC2.09□□□□□ -2.07
HNF4AP41235 PMCHL1-202ENST00000423102 261 ntBASIC2.09□□□□□ -2.07
HNF4AP41235 MRPS18CP6-201ENST00000423587 223 ntBASIC2.09□□□□□ -2.07
HNF4AP41235 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC2.09□□□□□ -2.07
HNF4AP41235 Z82188.1-201ENST00000436709 154 ntBASIC2.09□□□□□ -2.07
HNF4AP41235 Y_RNA.631-201ENST00000459607 101 ntBASIC2.09□□□□□ -2.07
HNF4AP41235 RPL23AP42-201ENST00000471152 471 ntBASIC2.09□□□□□ -2.07
HNF4AP41235 RPL17P19-201ENST00000489069 552 ntBASIC2.09□□□□□ -2.07
HNF4AP41235 AC104564.1-201ENST00000493028 407 ntBASIC2.09□□□□□ -2.07
HNF4AP41235 ANXA2P1-201ENST00000505539 926 ntBASIC2.09□□□□□ -2.07
HNF4AP41235 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC2.09□□□□□ -2.07
HNF4AP41235 RNU5F-2P-201ENST00000516066 82 ntBASIC2.09□□□□□ -2.07
HNF4AP41235 SCARNA16.3-201ENST00000516595 184 ntBASIC2.09□□□□□ -2.07
HNF4AP41235 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.09□□□□□ -2.07
HNF4AP41235 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.09□□□□□ -2.07
HNF4AP41235 MIR3171-201ENST00000584270 74 ntBASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 133.2 ms