Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC025033.1-201ENST00000463883 194 ntBASIC1.95□□□□□ -2.1
SOX3P41225 AC068781.1-201ENST00000488231 618 ntBASIC1.95□□□□□ -2.1
SOX3P41225 YWHAEP4-201ENST00000505390 198 ntBASIC1.95□□□□□ -2.1
SOX3P41225 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.95□□□□□ -2.1
SOX3P41225 AC034114.1-201ENST00000520293 285 ntBASIC1.95□□□□□ -2.1
SOX3P41225 NDUFA5P6-201ENST00000542110 379 ntBASIC1.95□□□□□ -2.1
SOX3P41225 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.95□□□□□ -2.1
SOX3P41225 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.95□□□□□ -2.1
SOX3P41225 RPL17P51-201ENST00000605218 238 ntBASIC1.95□□□□□ -2.1
SOX3P41225 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.95□□□□□ -2.1
SOX3P41225 MIR1248-201ENST00000629190 106 ntBASIC1.95□□□□□ -2.1
SOX3P41225 MIR219B-201ENST00000637023 88 ntBASIC1.95□□□□□ -2.1
SOX3P41225 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
SOX3P41225 RNY1P16-201ENST00000363063 111 ntBASIC1.94□□□□□ -2.1
SOX3P41225 RNU6-137P-201ENST00000363680 108 ntBASIC1.94□□□□□ -2.1
SOX3P41225 Y_RNA.394-201ENST00000383942 103 ntBASIC1.94□□□□□ -2.1
SOX3P41225 Y_RNA.405-201ENST00000383979 100 ntBASIC1.94□□□□□ -2.1
SOX3P41225 Y_RNA.451-201ENST00000384200 100 ntBASIC1.94□□□□□ -2.1
SOX3P41225 RNU4-52P-201ENST00000384209 138 ntBASIC1.94□□□□□ -2.1
SOX3P41225 Y_RNA.524-201ENST00000384564 100 ntBASIC1.94□□□□□ -2.1
SOX3P41225 Y_RNA.561-201ENST00000384694 100 ntBASIC1.94□□□□□ -2.1
SOX3P41225 MIR153-2-201ENST00000385225 87 ntBASIC1.94□□□□□ -2.1
SOX3P41225 RNY4P36-201ENST00000391116 96 ntBASIC1.94□□□□□ -2.1
SOX3P41225 SNORA75.6-201ENST00000391318 127 ntBASIC1.94□□□□□ -2.1
SOX3P41225 MTCO2P27-201ENST00000420740 428 ntBASIC1.94□□□□□ -2.1
SOX3P41225 AC010095.1-201ENST00000443543 144 ntBASIC1.94□□□□□ -2.1
SOX3P41225 AL035666.1-201ENST00000446195 348 ntBASIC1.94□□□□□ -2.1
SOX3P41225 MTCO3P10-201ENST00000455912 772 ntBASIC1.94□□□□□ -2.1
SOX3P41225 SNORD19B-201ENST00000459623 84 ntBASIC1.94□□□□□ -2.1
SOX3P41225 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.94□□□□□ -2.1
SOX3P41225 RNU6-965P-201ENST00000516721 96 ntBASIC1.94□□□□□ -2.1
SOX3P41225 RNU6-1198P-201ENST00000516904 67 ntBASIC1.94□□□□□ -2.1
SOX3P41225 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.94□□□□□ -2.1
SOX3P41225 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.94□□□□□ -2.1
SOX3P41225 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.94□□□□□ -2.1
SOX3P41225 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.93□□□□□ -2.1
SOX3P41225 BX322639.1-202ENST00000423987 2213 ntBASIC1.93□□□□□ -2.1
SOX3P41225 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.93□□□□□ -2.1
SOX3P41225 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
SOX3P41225 RNU4-79P-201ENST00000362764 141 ntBASIC1.93□□□□□ -2.1
SOX3P41225 Y_RNA.61-201ENST00000362835 102 ntBASIC1.93□□□□□ -2.1
SOX3P41225 Y_RNA.259-201ENST00000364619 101 ntBASIC1.93□□□□□ -2.1
SOX3P41225 MIR487A-201ENST00000385009 80 ntBASIC1.93□□□□□ -2.1
SOX3P41225 AL079342.1-201ENST00000401460 267 ntBASIC1.93□□□□□ -2.1
SOX3P41225 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
SOX3P41225 RPL23AP50-201ENST00000434149 455 ntBASIC1.93□□□□□ -2.1
SOX3P41225 AC236972.2-201ENST00000434979 310 ntBASIC1.93□□□□□ -2.1
SOX3P41225 RPL30P15-201ENST00000457129 321 ntBASIC1.93□□□□□ -2.1
SOX3P41225 RNU7-152P-201ENST00000458982 64 ntBASIC1.93□□□□□ -2.1
SOX3P41225 RPL17P19-201ENST00000489069 552 ntBASIC1.93□□□□□ -2.1
SOX3P41225 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.93□□□□□ -2.1
SOX3P41225 MIR449C-201ENST00000516047 92 ntBASIC1.93□□□□□ -2.1
SOX3P41225 RNU1-40P-201ENST00000516816 164 ntBASIC1.93□□□□□ -2.1
SOX3P41225 RNU1-97P-201ENST00000516872 164 ntBASIC1.93□□□□□ -2.1
SOX3P41225 RNA5SP54-201ENST00000516951 92 ntBASIC1.93□□□□□ -2.1
SOX3P41225 RNU6-667P-201ENST00000517186 102 ntBASIC1.93□□□□□ -2.1
SOX3P41225 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.93□□□□□ -2.1
SOX3P41225 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC1.93□□□□□ -2.1
SOX3P41225 AC090517.1-201ENST00000569307 266 ntBASIC1.93□□□□□ -2.1
SOX3P41225 MIR4448-201ENST00000584360 86 ntBASIC1.93□□□□□ -2.1
SOX3P41225 AC016727.2-201ENST00000603988 621 ntBASIC1.93□□□□□ -2.1
SOX3P41225 AC245884.12-201ENST00000615364 59 ntBASIC1.93□□□□□ -2.1
SOX3P41225 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.93□□□□□ -2.1
SOX3P41225 AC084781.2-201ENST00000615568 161 ntBASIC1.93□□□□□ -2.1
SOX3P41225 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.93□□□□□ -2.1
SOX3P41225 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
SOX3P41225 AC006026.1-201ENST00000444025 1803 ntBASIC1.92□□□□□ -2.1
SOX3P41225 Y_RNA.187-201ENST00000363918 113 ntBASIC1.92□□□□□ -2.1
SOX3P41225 RNU6-234P-201ENST00000365229 104 ntBASIC1.92□□□□□ -2.1
SOX3P41225 RNU6-890P-201ENST00000384121 107 ntBASIC1.92□□□□□ -2.1
SOX3P41225 AF228730.4-201ENST00000421457 183 ntBASIC1.92□□□□□ -2.1
SOX3P41225 MTCYBP10-201ENST00000424905 650 ntBASIC1.92□□□□□ -2.1
SOX3P41225 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC1.92□□□□□ -2.1
SOX3P41225 AL353997.1-201ENST00000432936 108 ntBASIC1.92□□□□□ -2.1
SOX3P41225 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.92□□□□□ -2.1
SOX3P41225 snoU13.26-201ENST00000459452 105 ntBASIC1.92□□□□□ -2.1
SOX3P41225 AC107032.1-201ENST00000485945 480 ntBASIC1.92□□□□□ -2.1
SOX3P41225 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.92□□□□□ -2.1
SOX3P41225 AC093303.1-201ENST00000514549 295 ntBASIC1.92□□□□□ -2.1
SOX3P41225 RNU6-120P-201ENST00000516077 103 ntBASIC1.92□□□□□ -2.1
SOX3P41225 Y_RNA.675-201ENST00000516389 149 ntBASIC1.92□□□□□ -2.1
SOX3P41225 RNU6-58P-201ENST00000517143 103 ntBASIC1.92□□□□□ -2.1
SOX3P41225 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.92□□□□□ -2.1
SOX3P41225 AC026470.2-201ENST00000561492 181 ntBASIC1.92□□□□□ -2.1
SOX3P41225 SUB1P3-201ENST00000564581 315 ntBASIC1.92□□□□□ -2.1
SOX3P41225 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC1.92□□□□□ -2.1
SOX3P41225 AC002984.1-201ENST00000591692 448 ntBASIC1.92□□□□□ -2.1
SOX3P41225 AC100812.1-201ENST00000607622 580 ntBASIC1.92□□□□□ -2.1
SOX3P41225 MIR6840-201ENST00000611937 71 ntBASIC1.92□□□□□ -2.1
SOX3P41225 AC133104.2-201ENST00000615272 193 ntBASIC1.92□□□□□ -2.1
SOX3P41225 AL359314.1-201ENST00000616913 261 ntBASIC1.92□□□□□ -2.1
SOX3P41225 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
SOX3P41225 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
SOX3P41225 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.91□□□□□ -2.1
SOX3P41225 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
SOX3P41225 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SOX3P41225 RNU1-76P-201ENST00000362903 159 ntBASIC1.91□□□□□ -2.1
SOX3P41225 RNU6-797P-201ENST00000363101 109 ntBASIC1.91□□□□□ -2.1
SOX3P41225 Y_RNA.419-201ENST00000384041 102 ntBASIC1.91□□□□□ -2.1
SOX3P41225 RNU6-700P-201ENST00000391043 107 ntBASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms