Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RNU6-1261P-201ENST00000517194 104 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 AC024995.1-201ENST00000523014 93 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC-0.54□□□□□ -2.5
CUX1P39880 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC-0.54□□□□□ -2.5
CUX1P39880 AC005176.2-201ENST00000596933 147 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 AL355297.3-201ENST00000604082 446 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 AC007014.2-201ENST00000615581 479 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 MIR1322-201ENST00000638013 71 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 SNORA27.3-201ENST00000364937 134 ntBASIC-0.55□□□□□ -2.5
CUX1P39880 RNU6-142P-201ENST00000384019 107 ntBASIC-0.55□□□□□ -2.5
CUX1P39880 Y_RNA.495-201ENST00000384435 112 ntBASIC-0.55□□□□□ -2.5
CUX1P39880 MIR573-201ENST00000384964 99 ntBASIC-0.55□□□□□ -2.5
CUX1P39880 MIR660-201ENST00000385235 97 ntBASIC-0.55□□□□□ -2.5
CUX1P39880 SNORA75.6-201ENST00000391318 127 ntBASIC-0.55□□□□□ -2.5
CUX1P39880 AL590632.1-201ENST00000424289 371 ntBASIC-0.55□□□□□ -2.5
CUX1P39880 RNU7-56P-201ENST00000458744 62 ntBASIC-0.55□□□□□ -2.5
CUX1P39880 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC-0.55□□□□□ -2.5
CUX1P39880 AC022447.4-201ENST00000504053 364 ntBASIC-0.55□□□□□ -2.5
CUX1P39880 AP003716.2-201ENST00000528260 108 ntBASIC-0.55□□□□□ -2.5
CUX1P39880 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC-0.55□□□□□ -2.5
CUX1P39880 AC234772.3-201ENST00000602277 528 ntBASIC-0.55□□□□□ -2.5
CUX1P39880 MTND3P19-201ENST00000603825 345 ntBASIC-0.55□□□□□ -2.5
CUX1P39880 MIR8054-201ENST00000620877 86 ntBASIC-0.55□□□□□ -2.5
CUX1P39880 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC-0.56□□□□□ -2.5
CUX1P39880 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC-0.56□□□□□ -2.5
CUX1P39880 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC-0.56□□□□□ -2.5
CUX1P39880 AC091860.1-201ENST00000505723 432 ntBASIC-0.56□□□□□ -2.5
CUX1P39880 LRRC6P1-201ENST00000532188 885 ntBASIC-0.56□□□□□ -2.5
CUX1P39880 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC-0.56□□□□□ -2.5
CUX1P39880 UBE2Q2P8-201ENST00000560644 102 ntBASIC-0.56□□□□□ -2.5
CUX1P39880 MIR3681-201ENST00000580089 72 ntBASIC-0.56□□□□□ -2.5
CUX1P39880 AL606834.3-201ENST00000602615 496 ntBASIC-0.56□□□□□ -2.5
CUX1P39880 CTHRC1P1-201ENST00000605383 469 ntBASIC-0.56□□□□□ -2.5
CUX1P39880 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC-0.56□□□□□ -2.5
CUX1P39880 SNORD65C-201ENST00000390962 71 ntBASIC-0.57□□□□□ -2.5
CUX1P39880 MIR1207-201ENST00000408249 87 ntBASIC-0.57□□□□□ -2.5
CUX1P39880 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC-0.57□□□□□ -2.5
CUX1P39880 MTCO3P43-201ENST00000440974 771 ntBASIC-0.57□□□□□ -2.5
CUX1P39880 ART2BP-201ENST00000453501 499 ntBASIC-0.57□□□□□ -2.5
CUX1P39880 SNORD126-201ENST00000459475 77 ntBASIC-0.57□□□□□ -2.5
CUX1P39880 RNU6-760P-201ENST00000516078 97 ntBASIC-0.57□□□□□ -2.5
CUX1P39880 RNU6-1146P-201ENST00000516282 102 ntBASIC-0.57□□□□□ -2.5
CUX1P39880 RNU6-917P-201ENST00000516294 104 ntBASIC-0.57□□□□□ -2.5
CUX1P39880 RNU6-1098P-201ENST00000516772 96 ntBASIC-0.57□□□□□ -2.5
CUX1P39880 RNU6-856P-201ENST00000516959 98 ntBASIC-0.57□□□□□ -2.5
CUX1P39880 AL121992.2-201ENST00000606262 256 ntBASIC-0.57□□□□□ -2.5
CUX1P39880 RNU6-94P-201ENST00000607728 107 ntBASIC-0.57□□□□□ -2.5
CUX1P39880 AL096861.1-201ENST00000610899 123 ntBASIC-0.57□□□□□ -2.5
CUX1P39880 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC-0.57□□□□□ -2.5
CUX1P39880 RNU6-1285P-201ENST00000363480 105 ntBASIC-0.58□□□□□ -2.5
CUX1P39880 SNORD115-24-201ENST00000363528 82 ntBASIC-0.58□□□□□ -2.5
CUX1P39880 RNU6-575P-201ENST00000411326 105 ntBASIC-0.58□□□□□ -2.5
CUX1P39880 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC-0.58□□□□□ -2.5
CUX1P39880 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC-0.58□□□□□ -2.5
CUX1P39880 AC115990.1-201ENST00000526957 301 ntBASIC-0.58□□□□□ -2.5
CUX1P39880 MIR3192-201ENST00000584920 77 ntBASIC-0.58□□□□□ -2.5
CUX1P39880 AC107905.1-201ENST00000616204 426 ntBASIC-0.58□□□□□ -2.5
CUX1P39880 FTX_2.1-201ENST00000618816 94 ntBASIC-0.58□□□□□ -2.5
CUX1P39880 AL445264.1-201ENST00000621719 171 ntBASIC-0.58□□□□□ -2.5
CUX1P39880 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC-0.58□□□□□ -2.5
CUX1P39880 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC-0.58□□□□□ -2.5
CUX1P39880 BX322639.1-202ENST00000423987 2213 ntBASIC-0.58□□□□□ -2.5
CUX1P39880 SNORD14C-201ENST00000365382 88 ntBASIC-0.59□□□□□ -2.5
CUX1P39880 SNORD83.1-201ENST00000411362 77 ntBASIC-0.59□□□□□ -2.5
CUX1P39880 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC-0.59□□□□□ -2.5
CUX1P39880 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC-0.59□□□□□ -2.5
CUX1P39880 AL606517.2-201ENST00000442855 241 ntBASIC-0.59□□□□□ -2.5
CUX1P39880 MIR3612-201ENST00000579753 87 ntBASIC-0.59□□□□□ -2.5
CUX1P39880 AL670379.3-201ENST00000605040 251 ntBASIC-0.59□□□□□ -2.5
CUX1P39880 SNORA25.18-201ENST00000607153 114 ntBASIC-0.59□□□□□ -2.5
CUX1P39880 AL356596.1-201ENST00000624230 379 ntBASIC-0.59□□□□□ -2.5
CUX1P39880 SNORD56.1-201ENST00000362913 68 ntBASIC-0.59□□□□□ -2.5
CUX1P39880 RNA5SP467-201ENST00000391274 118 ntBASIC-0.59□□□□□ -2.5
CUX1P39880 AL359634.1-202ENST00000404721 284 ntBASIC-0.59□□□□□ -2.5
CUX1P39880 MIR548H2-201ENST00000408874 88 ntBASIC-0.59□□□□□ -2.5
CUX1P39880 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC-0.59□□□□□ -2.5
CUX1P39880 HIGD1AP15-201ENST00000416198 280 ntBASIC-0.59□□□□□ -2.5
CUX1P39880 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC-0.59□□□□□ -2.5
CUX1P39880 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC-0.59□□□□□ -2.5
CUX1P39880 UBE2D3P3-201ENST00000426992 425 ntBASIC-0.59□□□□□ -2.5
CUX1P39880 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC-0.59□□□□□ -2.5
CUX1P39880 AL627311.1-201ENST00000431514 115 ntBASIC-0.59□□□□□ -2.5
CUX1P39880 RPS23P5-201ENST00000495419 428 ntBASIC-0.59□□□□□ -2.5
CUX1P39880 AC113347.3-201ENST00000509113 148 ntBASIC-0.59□□□□□ -2.5
CUX1P39880 RNU5F-4P-201ENST00000516581 114 ntBASIC-0.59□□□□□ -2.5
CUX1P39880 MTND1P36-201ENST00000522384 936 ntBASIC-0.59□□□□□ -2.5
CUX1P39880 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC-0.59□□□□□ -2.5
CUX1P39880 RPL17P51-201ENST00000605218 238 ntBASIC-0.59□□□□□ -2.5
CUX1P39880 AP000676.3-201ENST00000623299 569 ntBASIC-0.59□□□□□ -2.5
CUX1P39880 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC-0.6□□□□□ -2.51
CUX1P39880 MTCO2P7-201ENST00000446518 666 ntBASIC-0.6□□□□□ -2.51
CUX1P39880 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC-0.6□□□□□ -2.51
CUX1P39880 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC-0.6□□□□□ -2.51
CUX1P39880 AC010376.1-201ENST00000522101 334 ntBASIC-0.6□□□□□ -2.51
CUX1P39880 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC-0.6□□□□□ -2.51
CUX1P39880 MIR4778-201ENST00000577635 80 ntBASIC-0.6□□□□□ -2.51
CUX1P39880 AC091135.1-201ENST00000585943 307 ntBASIC-0.6□□□□□ -2.51
CUX1P39880 AC011921.3-201ENST00000605540 361 ntBASIC-0.6□□□□□ -2.51
CUX1P39880 MIR1264-201ENST00000616374 69 ntBASIC-0.6□□□□□ -2.51
CUX1P39880 AC253576.2-201ENST00000618815 580 ntBASIC-0.6□□□□□ -2.51
Retrieved 100 of 98,524 protein–RNA pairs in 123.1 ms