Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.07□□□□□ -2.24
BRCA1P38398 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
BRCA1P38398 RNU6-545P-201ENST00000362681 104 ntBASIC1.07□□□□□ -2.24
BRCA1P38398 Y_RNA.399-201ENST00000383955 105 ntBASIC1.07□□□□□ -2.24
BRCA1P38398 MIR1283-1-201ENST00000408494 87 ntBASIC1.07□□□□□ -2.24
BRCA1P38398 AL161935.2-201ENST00000414627 60 ntBASIC1.07□□□□□ -2.24
BRCA1P38398 AL590135.1-201ENST00000422215 156 ntBASIC1.07□□□□□ -2.24
BRCA1P38398 AC019205.3-201ENST00000424573 156 ntBASIC1.07□□□□□ -2.24
BRCA1P38398 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC1.07□□□□□ -2.24
BRCA1P38398 SNRPEP8-201ENST00000442866 260 ntBASIC1.07□□□□□ -2.24
BRCA1P38398 AC016700.2-201ENST00000446011 156 ntBASIC1.07□□□□□ -2.24
BRCA1P38398 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC1.07□□□□□ -2.24
BRCA1P38398 AC015911.1-201ENST00000495111 156 ntBASIC1.07□□□□□ -2.24
BRCA1P38398 RN7SKP179-201ENST00000516126 217 ntBASIC1.07□□□□□ -2.24
BRCA1P38398 RN7SKP287-201ENST00000516546 266 ntBASIC1.07□□□□□ -2.24
BRCA1P38398 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.07□□□□□ -2.24
BRCA1P38398 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
BRCA1P38398 RNU6-336P-201ENST00000364891 107 ntBASIC1.06□□□□□ -2.24
BRCA1P38398 MTCO2P11-201ENST00000431069 680 ntBASIC1.06□□□□□ -2.24
BRCA1P38398 MTND1P27-201ENST00000451117 902 ntBASIC1.06□□□□□ -2.24
BRCA1P38398 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC1.06□□□□□ -2.24
BRCA1P38398 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC1.06□□□□□ -2.24
BRCA1P38398 Y_RNA.681-201ENST00000516445 113 ntBASIC1.06□□□□□ -2.24
BRCA1P38398 RNU6-1069P-201ENST00000516612 133 ntBASIC1.06□□□□□ -2.24
BRCA1P38398 RNU6-1198P-201ENST00000516904 67 ntBASIC1.06□□□□□ -2.24
BRCA1P38398 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
BRCA1P38398 AC025449.1-201ENST00000603896 529 ntBASIC1.06□□□□□ -2.24
BRCA1P38398 AP001836.1-201ENST00000604675 523 ntBASIC1.06□□□□□ -2.24
BRCA1P38398 AL353149.1-201ENST00000610667 244 ntBASIC1.06□□□□□ -2.24
BRCA1P38398 AC009541.1-201ENST00000438279 2662 ntBASIC1.06□□□□□ -2.24
BRCA1P38398 SNORD73A-201ENST00000386062 65 ntBASIC1.05□□□□□ -2.24
BRCA1P38398 MIR300-201ENST00000401138 83 ntBASIC1.05□□□□□ -2.24
BRCA1P38398 AL606923.1-201ENST00000406616 190 ntBASIC1.05□□□□□ -2.24
BRCA1P38398 AC000111.3-201ENST00000433478 193 ntBASIC1.05□□□□□ -2.24
BRCA1P38398 AL135790.2-201ENST00000437701 267 ntBASIC1.05□□□□□ -2.24
BRCA1P38398 HSPE1P9-201ENST00000440046 311 ntBASIC1.05□□□□□ -2.24
BRCA1P38398 ZNF736P12Y-201ENST00000443152 1243 ntBASIC1.05□□□□□ -2.24
BRCA1P38398 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.05□□□□□ -2.24
BRCA1P38398 AC005908.1-201ENST00000468701 347 ntBASIC1.05□□□□□ -2.24
BRCA1P38398 AK3P2-201ENST00000507976 429 ntBASIC1.05□□□□□ -2.24
BRCA1P38398 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC1.05□□□□□ -2.24
BRCA1P38398 RNA5SP503-201ENST00000517047 117 ntBASIC1.05□□□□□ -2.24
BRCA1P38398 SNORA77B-201ENST00000578179 125 ntBASIC1.05□□□□□ -2.24
BRCA1P38398 AC092354.1-201ENST00000606057 376 ntBASIC1.05□□□□□ -2.24
BRCA1P38398 MIR3976-201ENST00000606807 139 ntBASIC1.05□□□□□ -2.24
BRCA1P38398 AL451064.1-201ENST00000607718 471 ntBASIC1.05□□□□□ -2.24
BRCA1P38398 AC087683.2-201ENST00000611384 326 ntBASIC1.05□□□□□ -2.24
BRCA1P38398 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.05□□□□□ -2.24
BRCA1P38398 RNU6-827P-201ENST00000365553 106 ntBASIC1.05□□□□□ -2.24
BRCA1P38398 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC1.05□□□□□ -2.24
BRCA1P38398 MTATP6P18-201ENST00000417994 673 ntBASIC1.05□□□□□ -2.24
BRCA1P38398 AC012306.1-201ENST00000423267 114 ntBASIC1.05□□□□□ -2.24
BRCA1P38398 AC015922.2-201ENST00000435593 184 ntBASIC1.05□□□□□ -2.24
BRCA1P38398 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.05□□□□□ -2.24
BRCA1P38398 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.05□□□□□ -2.24
BRCA1P38398 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.05□□□□□ -2.24
BRCA1P38398 RPS27AP8-201ENST00000452665 445 ntBASIC1.05□□□□□ -2.24
BRCA1P38398 RPS26P55-201ENST00000471178 356 ntBASIC1.05□□□□□ -2.24
BRCA1P38398 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC1.05□□□□□ -2.24
BRCA1P38398 AC011406.1-201ENST00000512440 370 ntBASIC1.05□□□□□ -2.24
BRCA1P38398 RNU6-948P-201ENST00000516374 107 ntBASIC1.05□□□□□ -2.24
BRCA1P38398 RNA5SP404-201ENST00000517118 132 ntBASIC1.05□□□□□ -2.24
BRCA1P38398 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.05□□□□□ -2.24
BRCA1P38398 AC110760.3-201ENST00000598794 467 ntBASIC1.05□□□□□ -2.24
BRCA1P38398 AC073648.5-201ENST00000603502 305 ntBASIC1.05□□□□□ -2.24
BRCA1P38398 AC137590.2-201ENST00000619709 240 ntBASIC1.05□□□□□ -2.24
BRCA1P38398 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.05□□□□□ -2.24
BRCA1P38398 MIR924-201ENST00000638017 53 ntBASIC1.05□□□□□ -2.24
BRCA1P38398 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC1.05□□□□□ -2.24
BRCA1P38398 RNU6-552P-201ENST00000362869 119 ntBASIC1.04□□□□□ -2.24
BRCA1P38398 RNU1-96P-201ENST00000364163 162 ntBASIC1.04□□□□□ -2.24
BRCA1P38398 RNU6-1235P-201ENST00000384559 107 ntBASIC1.04□□□□□ -2.24
BRCA1P38398 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.04□□□□□ -2.24
BRCA1P38398 RNU2-9P-201ENST00000410194 145 ntBASIC1.04□□□□□ -2.24
BRCA1P38398 COX6CP10-201ENST00000416832 224 ntBASIC1.04□□□□□ -2.24
BRCA1P38398 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC1.04□□□□□ -2.24
BRCA1P38398 AC133104.1-201ENST00000429100 218 ntBASIC1.04□□□□□ -2.24
BRCA1P38398 RNU6-498P-201ENST00000459468 107 ntBASIC1.04□□□□□ -2.24
BRCA1P38398 RNU7-94P-201ENST00000459576 63 ntBASIC1.04□□□□□ -2.24
BRCA1P38398 AC010531.2-201ENST00000465012 153 ntBASIC1.04□□□□□ -2.24
BRCA1P38398 AC114982.1-201ENST00000469402 321 ntBASIC1.04□□□□□ -2.24
BRCA1P38398 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.04□□□□□ -2.24
BRCA1P38398 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.04□□□□□ -2.24
BRCA1P38398 AC021146.2-201ENST00000504736 556 ntBASIC1.04□□□□□ -2.24
BRCA1P38398 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC1.04□□□□□ -2.24
BRCA1P38398 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC1.04□□□□□ -2.24
BRCA1P38398 AC010493.1-201ENST00000513479 292 ntBASIC1.04□□□□□ -2.24
BRCA1P38398 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC1.04□□□□□ -2.24
BRCA1P38398 AL589743.1-201ENST00000551932 2712 ntBASIC1.04□□□□□ -2.24
BRCA1P38398 AL160236.1-201ENST00000556317 195 ntBASIC1.04□□□□□ -2.24
BRCA1P38398 MIR4528-201ENST00000577763 90 ntBASIC1.04□□□□□ -2.24
BRCA1P38398 MZT1P2-201ENST00000604387 248 ntBASIC1.04□□□□□ -2.24
BRCA1P38398 AL365434.2-201ENST00000607979 234 ntBASIC1.04□□□□□ -2.24
BRCA1P38398 AL359697.1-201ENST00000624879 587 ntBASIC1.04□□□□□ -2.24
BRCA1P38398 Y_RNA.169-201ENST00000363745 96 ntBASIC1.03□□□□□ -2.24
BRCA1P38398 SNORA63D-201ENST00000364359 132 ntBASIC1.03□□□□□ -2.24
BRCA1P38398 RNU6-715P-201ENST00000365204 103 ntBASIC1.03□□□□□ -2.24
BRCA1P38398 AC090960.1-201ENST00000421072 306 ntBASIC1.03□□□□□ -2.24
BRCA1P38398 MTCO3P29-201ENST00000432119 779 ntBASIC1.03□□□□□ -2.24
BRCA1P38398 AC099677.2-201ENST00000436385 175 ntBASIC1.03□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms