Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 RNU6-438P-201ENST00000365561 103 ntBASIC1.75□□□□□ -2.13
PTPN4P29074 SNORA32.2-201ENST00000384049 122 ntBASIC1.75□□□□□ -2.13
PTPN4P29074 RNU6-933P-201ENST00000384424 107 ntBASIC1.75□□□□□ -2.13
PTPN4P29074 MIR521-1-201ENST00000384902 87 ntBASIC1.75□□□□□ -2.13
PTPN4P29074 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
PTPN4P29074 AC130509.1-201ENST00000464158 433 ntBASIC1.75□□□□□ -2.13
PTPN4P29074 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.75□□□□□ -2.13
PTPN4P29074 AC027575.1-201ENST00000481064 460 ntBASIC1.75□□□□□ -2.13
PTPN4P29074 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.75□□□□□ -2.13
PTPN4P29074 AC008834.1-201ENST00000511612 175 ntBASIC1.75□□□□□ -2.13
PTPN4P29074 AC107393.1-201ENST00000512403 346 ntBASIC1.75□□□□□ -2.13
PTPN4P29074 RNU6-358P-201ENST00000516564 75 ntBASIC1.75□□□□□ -2.13
PTPN4P29074 RNU6-1088P-201ENST00000516850 104 ntBASIC1.75□□□□□ -2.13
PTPN4P29074 AC087441.2-201ENST00000529141 262 ntBASIC1.75□□□□□ -2.13
PTPN4P29074 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.75□□□□□ -2.13
PTPN4P29074 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC1.75□□□□□ -2.13
PTPN4P29074 MIR3198-2-201ENST00000577868 80 ntBASIC1.75□□□□□ -2.13
PTPN4P29074 MIR3976-201ENST00000606807 139 ntBASIC1.75□□□□□ -2.13
PTPN4P29074 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.75□□□□□ -2.13
PTPN4P29074 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
PTPN4P29074 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
PTPN4P29074 RNU6-23P-201ENST00000363283 107 ntBASIC1.74□□□□□ -2.13
PTPN4P29074 Y_RNA.248-201ENST00000364501 109 ntBASIC1.74□□□□□ -2.13
PTPN4P29074 RNA5SP363-201ENST00000365072 115 ntBASIC1.74□□□□□ -2.13
PTPN4P29074 RNU6-378P-201ENST00000384324 107 ntBASIC1.74□□□□□ -2.13
PTPN4P29074 MIR208B-201ENST00000401172 77 ntBASIC1.74□□□□□ -2.13
PTPN4P29074 RPS20P15-201ENST00000412792 311 ntBASIC1.74□□□□□ -2.13
PTPN4P29074 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.74□□□□□ -2.13
PTPN4P29074 AC123900.1-201ENST00000420390 96 ntBASIC1.74□□□□□ -2.13
PTPN4P29074 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.74□□□□□ -2.13
PTPN4P29074 MTATP6P13-201ENST00000438531 667 ntBASIC1.74□□□□□ -2.13
PTPN4P29074 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.74□□□□□ -2.13
PTPN4P29074 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.74□□□□□ -2.13
PTPN4P29074 HMGN2P18-201ENST00000450680 270 ntBASIC1.74□□□□□ -2.13
PTPN4P29074 RNU4-49P-201ENST00000516080 140 ntBASIC1.74□□□□□ -2.13
PTPN4P29074 SNORA25.15-201ENST00000516487 89 ntBASIC1.74□□□□□ -2.13
PTPN4P29074 RNU6-273P-201ENST00000516937 96 ntBASIC1.74□□□□□ -2.13
PTPN4P29074 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
PTPN4P29074 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.74□□□□□ -2.13
PTPN4P29074 AC022254.1-201ENST00000567857 235 ntBASIC1.74□□□□□ -2.13
PTPN4P29074 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.74□□□□□ -2.13
PTPN4P29074 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.74□□□□□ -2.13
PTPN4P29074 AC093913.1-201ENST00000614178 329 ntBASIC1.74□□□□□ -2.13
PTPN4P29074 AC137590.2-201ENST00000619709 240 ntBASIC1.74□□□□□ -2.13
PTPN4P29074 AC009248.2-201ENST00000619826 254 ntBASIC1.74□□□□□ -2.13
PTPN4P29074 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
PTPN4P29074 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.73□□□□□ -2.13
PTPN4P29074 RNU5B-2P-201ENST00000363036 113 ntBASIC1.73□□□□□ -2.13
PTPN4P29074 RNU6-1286P-201ENST00000383871 107 ntBASIC1.73□□□□□ -2.13
PTPN4P29074 RNU6-1013P-201ENST00000384180 107 ntBASIC1.73□□□□□ -2.13
PTPN4P29074 SNORA29-201ENST00000384183 140 ntBASIC1.73□□□□□ -2.13
PTPN4P29074 RNU6-784P-201ENST00000384330 106 ntBASIC1.73□□□□□ -2.13
PTPN4P29074 RNU6-1026P-201ENST00000384465 108 ntBASIC1.73□□□□□ -2.13
PTPN4P29074 RNU6-790P-201ENST00000384479 105 ntBASIC1.73□□□□□ -2.13
PTPN4P29074 MIR597-201ENST00000384968 97 ntBASIC1.73□□□□□ -2.13
PTPN4P29074 RPS26P42-201ENST00000413485 326 ntBASIC1.73□□□□□ -2.13
PTPN4P29074 AC009310.1-201ENST00000414414 451 ntBASIC1.73□□□□□ -2.13
PTPN4P29074 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.73□□□□□ -2.13
PTPN4P29074 PCMTD1P1-201ENST00000455560 355 ntBASIC1.73□□□□□ -2.13
PTPN4P29074 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
PTPN4P29074 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.73□□□□□ -2.13
PTPN4P29074 RNU5F-4P-201ENST00000516581 114 ntBASIC1.73□□□□□ -2.13
PTPN4P29074 MRPS36P4-201ENST00000534436 298 ntBASIC1.73□□□□□ -2.13
PTPN4P29074 AC026470.2-201ENST00000561492 181 ntBASIC1.73□□□□□ -2.13
PTPN4P29074 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.73□□□□□ -2.13
PTPN4P29074 MIR3683-201ENST00000580847 82 ntBASIC1.73□□□□□ -2.13
PTPN4P29074 FGF7P1-201ENST00000582820 288 ntBASIC1.73□□□□□ -2.13
PTPN4P29074 AC005786.1-201ENST00000588553 154 ntBASIC1.73□□□□□ -2.13
PTPN4P29074 AC009994.1-201ENST00000606889 253 ntBASIC1.73□□□□□ -2.13
PTPN4P29074 AC084768.2-201ENST00000622736 221 ntBASIC1.73□□□□□ -2.13
PTPN4P29074 LINC02555-201ENST00000563933 1951 ntBASIC1.72□□□□□ -2.13
PTPN4P29074 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.72□□□□□ -2.13
PTPN4P29074 Y_RNA.301-201ENST00000364990 103 ntBASIC1.72□□□□□ -2.13
PTPN4P29074 RNA5SP190-201ENST00000365222 118 ntBASIC1.72□□□□□ -2.13
PTPN4P29074 Y_RNA.338-201ENST00000365320 114 ntBASIC1.72□□□□□ -2.13
PTPN4P29074 RNU6-968P-201ENST00000384076 107 ntBASIC1.72□□□□□ -2.13
PTPN4P29074 MIR517A-201ENST00000385001 87 ntBASIC1.72□□□□□ -2.13
PTPN4P29074 MIR9-3-201ENST00000385084 90 ntBASIC1.72□□□□□ -2.13
PTPN4P29074 AL356776.1-201ENST00000406574 447 ntBASIC1.72□□□□□ -2.13
PTPN4P29074 RNA5SP501-201ENST00000410990 112 ntBASIC1.72□□□□□ -2.13
PTPN4P29074 MTND4LP16-201ENST00000440828 295 ntBASIC1.72□□□□□ -2.13
PTPN4P29074 DAP3P1-201ENST00000441522 278 ntBASIC1.72□□□□□ -2.13
PTPN4P29074 snoU13.6-201ENST00000458785 104 ntBASIC1.72□□□□□ -2.13
PTPN4P29074 RNU6-329P-201ENST00000459618 107 ntBASIC1.72□□□□□ -2.13
PTPN4P29074 RPS23P5-201ENST00000495419 428 ntBASIC1.72□□□□□ -2.13
PTPN4P29074 MIR449C-201ENST00000516047 92 ntBASIC1.72□□□□□ -2.13
PTPN4P29074 RNA5SP454-201ENST00000517231 127 ntBASIC1.72□□□□□ -2.13
PTPN4P29074 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.72□□□□□ -2.13
PTPN4P29074 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.72□□□□□ -2.13
PTPN4P29074 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.72□□□□□ -2.13
PTPN4P29074 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.72□□□□□ -2.13
PTPN4P29074 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.72□□□□□ -2.13
PTPN4P29074 AC016727.1-205ENST00000605437 569 ntBASIC1.72□□□□□ -2.13
PTPN4P29074 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC1.72□□□□□ -2.13
PTPN4P29074 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.72□□□□□ -2.13
PTPN4P29074 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.71□□□□□ -2.14
PTPN4P29074 SNORD31B-201ENST00000364977 69 ntBASIC1.71□□□□□ -2.14
PTPN4P29074 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC1.71□□□□□ -2.14
PTPN4P29074 SNORA48.1-201ENST00000390879 135 ntBASIC1.71□□□□□ -2.14
PTPN4P29074 MIR934-201ENST00000401241 83 ntBASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 174 ms