Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC023632.4-201ENST00000517783 191 ntBASIC3.86□□□□□ -1.79
MSX1P28360 GNRHR2P1-201ENST00000555315 631 ntBASIC3.86□□□□□ -1.79
MSX1P28360 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.86□□□□□ -1.79
MSX1P28360 MIR4727-201ENST00000622232 55 ntBASIC3.86□□□□□ -1.79
MSX1P28360 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.86□□□□□ -1.79
MSX1P28360 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
MSX1P28360 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
MSX1P28360 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.85□□□□□ -1.79
MSX1P28360 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.85□□□□□ -1.79
MSX1P28360 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.85□□□□□ -1.79
MSX1P28360 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
MSX1P28360 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
MSX1P28360 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
MSX1P28360 RNU4-13P-201ENST00000364019 141 ntBASIC3.85□□□□□ -1.79
MSX1P28360 SNORA62.3-201ENST00000365110 153 ntBASIC3.85□□□□□ -1.79
MSX1P28360 RNU6-198P-201ENST00000384258 104 ntBASIC3.85□□□□□ -1.79
MSX1P28360 SNORA72-201ENST00000384339 132 ntBASIC3.85□□□□□ -1.79
MSX1P28360 SNORD14D-201ENST00000384390 87 ntBASIC3.85□□□□□ -1.79
MSX1P28360 MIR554-201ENST00000384874 96 ntBASIC3.85□□□□□ -1.79
MSX1P28360 MIR670-201ENST00000390142 98 ntBASIC3.85□□□□□ -1.79
MSX1P28360 SNORA26-201ENST00000391286 122 ntBASIC3.85□□□□□ -1.79
MSX1P28360 RN7SKP202-201ENST00000410439 330 ntBASIC3.85□□□□□ -1.79
MSX1P28360 RNA5SP511-201ENST00000410487 115 ntBASIC3.85□□□□□ -1.79
MSX1P28360 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC3.85□□□□□ -1.79
MSX1P28360 AC023449.1-201ENST00000454464 154 ntBASIC3.85□□□□□ -1.79
MSX1P28360 RNU6-221P-201ENST00000459541 99 ntBASIC3.85□□□□□ -1.79
MSX1P28360 AC010531.2-201ENST00000465012 153 ntBASIC3.85□□□□□ -1.79
MSX1P28360 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.85□□□□□ -1.79
MSX1P28360 RPL30P14-201ENST00000482744 348 ntBASIC3.85□□□□□ -1.79
MSX1P28360 RPL36AP48-201ENST00000485521 314 ntBASIC3.85□□□□□ -1.79
MSX1P28360 AC099522.1-202ENST00000514718 367 ntBASIC3.85□□□□□ -1.79
MSX1P28360 RNA5SP519-201ENST00000516480 119 ntBASIC3.85□□□□□ -1.79
MSX1P28360 AC027419.1-201ENST00000522976 328 ntBASIC3.85□□□□□ -1.79
MSX1P28360 MIR2681-201ENST00000581814 105 ntBASIC3.85□□□□□ -1.79
MSX1P28360 MIR4753-201ENST00000585119 83 ntBASIC3.85□□□□□ -1.79
MSX1P28360 AC110741.2-201ENST00000605278 268 ntBASIC3.85□□□□□ -1.79
MSX1P28360 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC3.85□□□□□ -1.79
MSX1P28360 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
MSX1P28360 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.84□□□□□ -1.79
MSX1P28360 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
MSX1P28360 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.84□□□□□ -1.79
MSX1P28360 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.84□□□□□ -1.79
MSX1P28360 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
MSX1P28360 MIR372-201ENST00000362225 67 ntBASIC3.84□□□□□ -1.79
MSX1P28360 RNU6-106P-201ENST00000384405 107 ntBASIC3.84□□□□□ -1.79
MSX1P28360 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
MSX1P28360 RNA5SP171-201ENST00000391071 115 ntBASIC3.84□□□□□ -1.79
MSX1P28360 AL356095.1-201ENST00000417217 199 ntBASIC3.84□□□□□ -1.79
MSX1P28360 AC010099.1-201ENST00000455434 375 ntBASIC3.84□□□□□ -1.79
MSX1P28360 RNA5SP246-201ENST00000458909 119 ntBASIC3.84□□□□□ -1.79
MSX1P28360 RNU2-58P-201ENST00000516403 183 ntBASIC3.84□□□□□ -1.79
MSX1P28360 RNU6-412P-201ENST00000516434 106 ntBASIC3.84□□□□□ -1.79
MSX1P28360 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.84□□□□□ -1.79
MSX1P28360 AC015720.1-201ENST00000565251 277 ntBASIC3.84□□□□□ -1.79
MSX1P28360 CYP4A43P-201ENST00000568156 121 ntBASIC3.84□□□□□ -1.79
MSX1P28360 MIR4286-201ENST00000580651 93 ntBASIC3.84□□□□□ -1.79
MSX1P28360 AC105245.1-201ENST00000581934 244 ntBASIC3.84□□□□□ -1.79
MSX1P28360 MIR432-201ENST00000606207 94 ntBASIC3.84□□□□□ -1.79
MSX1P28360 AL022345.2-201ENST00000606307 135 ntBASIC3.84□□□□□ -1.79
MSX1P28360 UBE3AP2-201ENST00000429033 2259 ntBASIC3.84□□□□□ -1.79
MSX1P28360 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.84□□□□□ -1.79
MSX1P28360 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
MSX1P28360 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
MSX1P28360 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.83□□□□□ -1.8
MSX1P28360 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.83□□□□□ -1.8
MSX1P28360 AC103988.1-201ENST00000566382 2177 ntBASIC3.83□□□□□ -1.8
MSX1P28360 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.83□□□□□ -1.8
MSX1P28360 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.83□□□□□ -1.8
MSX1P28360 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
MSX1P28360 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
MSX1P28360 Y_RNA.52-201ENST00000362760 96 ntBASIC3.83□□□□□ -1.8
MSX1P28360 RNA5SP283-201ENST00000365604 119 ntBASIC3.83□□□□□ -1.8
MSX1P28360 MIR181A2-201ENST00000384863 110 ntBASIC3.83□□□□□ -1.8
MSX1P28360 AL117339.2-201ENST00000430475 180 ntBASIC3.83□□□□□ -1.8
MSX1P28360 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC3.83□□□□□ -1.8
MSX1P28360 HMGN2P16-201ENST00000456802 261 ntBASIC3.83□□□□□ -1.8
MSX1P28360 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC3.83□□□□□ -1.8
MSX1P28360 RNU7-14P-201ENST00000459331 62 ntBASIC3.83□□□□□ -1.8
MSX1P28360 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.83□□□□□ -1.8
MSX1P28360 SNORA70.14-201ENST00000516205 110 ntBASIC3.83□□□□□ -1.8
MSX1P28360 SNORA18.4-201ENST00000516440 124 ntBASIC3.83□□□□□ -1.8
MSX1P28360 SNORA67.7-201ENST00000516664 135 ntBASIC3.83□□□□□ -1.8
MSX1P28360 AC018630.3-201ENST00000542637 96 ntBASIC3.83□□□□□ -1.8
MSX1P28360 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.83□□□□□ -1.8
MSX1P28360 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.83□□□□□ -1.8
MSX1P28360 RPL23AP91-201ENST00000569211 455 ntBASIC3.83□□□□□ -1.8
MSX1P28360 MIR3158-1-201ENST00000583596 81 ntBASIC3.83□□□□□ -1.8
MSX1P28360 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
MSX1P28360 MAPK10-372ENST00000641954 3413 ntBASIC3.83□□□□□ -1.8
MSX1P28360 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
MSX1P28360 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
MSX1P28360 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
MSX1P28360 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
MSX1P28360 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
MSX1P28360 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
MSX1P28360 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
MSX1P28360 RNU6-975P-201ENST00000384296 105 ntBASIC3.82□□□□□ -1.8
MSX1P28360 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
MSX1P28360 MIR891A-201ENST00000401237 79 ntBASIC3.82□□□□□ -1.8
MSX1P28360 AC008155.2-201ENST00000464337 397 ntBASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 167.5 ms