Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 Y_RNA.75-201ENST00000362927 97 ntBASIC3.86□□□□□ -1.79
LIG1P18858 Y_RNA.121-201ENST00000363309 113 ntBASIC3.86□□□□□ -1.79
LIG1P18858 SNORD56.3-201ENST00000363507 71 ntBASIC3.86□□□□□ -1.79
LIG1P18858 Y_RNA.238-201ENST00000364441 102 ntBASIC3.86□□□□□ -1.79
LIG1P18858 RNU6-1130P-201ENST00000365434 107 ntBASIC3.86□□□□□ -1.79
LIG1P18858 RNU6-805P-201ENST00000365643 106 ntBASIC3.86□□□□□ -1.79
LIG1P18858 SNORD116-18-201ENST00000383961 92 ntBASIC3.86□□□□□ -1.79
LIG1P18858 SNORA18.3-201ENST00000384122 132 ntBASIC3.86□□□□□ -1.79
LIG1P18858 MIR549A-201ENST00000385268 96 ntBASIC3.86□□□□□ -1.79
LIG1P18858 BTF3P11-201ENST00000426582 477 ntBASIC3.86□□□□□ -1.79
LIG1P18858 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.86□□□□□ -1.79
LIG1P18858 AC005840.1-201ENST00000498412 377 ntBASIC3.86□□□□□ -1.79
LIG1P18858 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.86□□□□□ -1.79
LIG1P18858 RNU1-143P-201ENST00000516296 146 ntBASIC3.86□□□□□ -1.79
LIG1P18858 SNORA31.26-201ENST00000517250 137 ntBASIC3.86□□□□□ -1.79
LIG1P18858 CARD18-203ENST00000532895 422 ntTSL 2 BASIC3.86□□□□□ -1.79
LIG1P18858 MIR3923-201ENST00000579521 83 ntBASIC3.86□□□□□ -1.79
LIG1P18858 U1.23-201ENST00000610293 146 ntBASIC3.86□□□□□ -1.79
LIG1P18858 RNU1-68P-201ENST00000615382 146 ntBASIC3.86□□□□□ -1.79
LIG1P18858 U1.39-201ENST00000621562 146 ntBASIC3.86□□□□□ -1.79
LIG1P18858 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.85□□□□□ -1.79
LIG1P18858 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.85□□□□□ -1.79
LIG1P18858 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.85□□□□□ -1.79
LIG1P18858 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.85□□□□□ -1.79
LIG1P18858 Y_RNA.343-201ENST00000365354 112 ntBASIC3.85□□□□□ -1.79
LIG1P18858 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
LIG1P18858 MIR208B-201ENST00000401172 77 ntBASIC3.85□□□□□ -1.79
LIG1P18858 RNA5SP293-201ENST00000410527 113 ntBASIC3.85□□□□□ -1.79
LIG1P18858 AC096649.2-201ENST00000416186 393 ntBASIC3.85□□□□□ -1.79
LIG1P18858 CYCSP4-201ENST00000429682 331 ntBASIC3.85□□□□□ -1.79
LIG1P18858 AL161651.1-201ENST00000440882 223 ntBASIC3.85□□□□□ -1.79
LIG1P18858 AC010099.1-201ENST00000455434 375 ntBASIC3.85□□□□□ -1.79
LIG1P18858 RAC1P5-201ENST00000512182 576 ntBASIC3.85□□□□□ -1.79
LIG1P18858 RNU5F-2P-201ENST00000516066 82 ntBASIC3.85□□□□□ -1.79
LIG1P18858 SNORA64.4-201ENST00000516632 81 ntBASIC3.85□□□□□ -1.79
LIG1P18858 RNU2-12P-201ENST00000517216 168 ntBASIC3.85□□□□□ -1.79
LIG1P18858 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC3.85□□□□□ -1.79
LIG1P18858 MIR7851-201ENST00000610611 160 ntBASIC3.85□□□□□ -1.79
LIG1P18858 AC073308.1-201ENST00000623696 305 ntBASIC3.85□□□□□ -1.79
LIG1P18858 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.85□□□□□ -1.79
LIG1P18858 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.85□□□□□ -1.79
LIG1P18858 AC004944.1-201ENST00000517807 3059 ntBASIC3.85□□□□□ -1.79
LIG1P18858 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.84□□□□□ -1.79
LIG1P18858 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.84□□□□□ -1.79
LIG1P18858 SNORA63.1-201ENST00000362493 131 ntBASIC3.84□□□□□ -1.79
LIG1P18858 RNU6-449P-201ENST00000383914 107 ntBASIC3.84□□□□□ -1.79
LIG1P18858 Y_RNA.400-201ENST00000383963 111 ntBASIC3.84□□□□□ -1.79
LIG1P18858 RNU6-959P-201ENST00000384671 107 ntBASIC3.84□□□□□ -1.79
LIG1P18858 MIR1289-1-201ENST00000408836 144 ntBASIC3.84□□□□□ -1.79
LIG1P18858 RNU2-51P-201ENST00000410708 197 ntBASIC3.84□□□□□ -1.79
LIG1P18858 Y_RNA.637-201ENST00000459424 114 ntBASIC3.84□□□□□ -1.79
LIG1P18858 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC3.84□□□□□ -1.79
LIG1P18858 U6.105-201ENST00000637379 88 ntBASIC3.84□□□□□ -1.79
LIG1P18858 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.84□□□□□ -1.79
LIG1P18858 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.84□□□□□ -1.79
LIG1P18858 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.83□□□□□ -1.8
LIG1P18858 RNU4-84P-201ENST00000364200 139 ntBASIC3.83□□□□□ -1.8
LIG1P18858 Y_RNA.497-201ENST00000384447 98 ntBASIC3.83□□□□□ -1.8
LIG1P18858 MIR183-201ENST00000384958 110 ntBASIC3.83□□□□□ -1.8
LIG1P18858 CBX3P9-201ENST00000402326 552 ntBASIC3.83□□□□□ -1.8
LIG1P18858 RPL23AP67-201ENST00000465341 474 ntBASIC3.83□□□□□ -1.8
LIG1P18858 RPS27AP9-201ENST00000477681 438 ntBASIC3.83□□□□□ -1.8
LIG1P18858 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC3.83□□□□□ -1.8
LIG1P18858 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.83□□□□□ -1.8
LIG1P18858 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
LIG1P18858 SNORD19.2-201ENST00000516978 73 ntBASIC3.83□□□□□ -1.8
LIG1P18858 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.83□□□□□ -1.8
LIG1P18858 AC105137.2-201ENST00000569073 466 ntBASIC3.83□□□□□ -1.8
LIG1P18858 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC3.83□□□□□ -1.8
LIG1P18858 AC009127.3-201ENST00000570531 403 ntBASIC3.83□□□□□ -1.8
LIG1P18858 HMGN2P15-201ENST00000585707 270 ntBASIC3.83□□□□□ -1.8
LIG1P18858 AC006380.1-201ENST00000603598 186 ntBASIC3.83□□□□□ -1.8
LIG1P18858 RNU6-91P-201ENST00000607774 107 ntBASIC3.83□□□□□ -1.8
LIG1P18858 AL078604.3-201ENST00000615580 211 ntBASIC3.83□□□□□ -1.8
LIG1P18858 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
LIG1P18858 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
LIG1P18858 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
LIG1P18858 AC017071.1-201ENST00000564407 2204 ntBASIC3.82□□□□□ -1.8
LIG1P18858 Y_RNA.329-201ENST00000365209 107 ntBASIC3.82□□□□□ -1.8
LIG1P18858 RNU4-17P-201ENST00000365598 141 ntBASIC3.82□□□□□ -1.8
LIG1P18858 RNU6-1264P-201ENST00000383891 107 ntBASIC3.82□□□□□ -1.8
LIG1P18858 Y_RNA.412-201ENST00000384001 104 ntBASIC3.82□□□□□ -1.8
LIG1P18858 RNU6-22P-201ENST00000384355 107 ntBASIC3.82□□□□□ -1.8
LIG1P18858 Y_RNA.568-201ENST00000384742 113 ntBASIC3.82□□□□□ -1.8
LIG1P18858 SNORD17-201ENST00000390930 237 ntBASIC3.82□□□□□ -1.8
LIG1P18858 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
LIG1P18858 AL357075.1-201ENST00000404107 726 ntBASIC3.82□□□□□ -1.8
LIG1P18858 RNU2-2P-201ENST00000410396 191 ntBASIC3.82□□□□□ -1.8
LIG1P18858 AC104332.2-201ENST00000429959 156 ntBASIC3.82□□□□□ -1.8
LIG1P18858 AC103975.1-201ENST00000482506 483 ntBASIC3.82□□□□□ -1.8
LIG1P18858 RNU6-436P-201ENST00000516171 114 ntBASIC3.82□□□□□ -1.8
LIG1P18858 RNU6-479P-201ENST00000516348 105 ntBASIC3.82□□□□□ -1.8
LIG1P18858 RNU6-62P-201ENST00000516526 102 ntBASIC3.82□□□□□ -1.8
LIG1P18858 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC3.82□□□□□ -1.8
LIG1P18858 MIR3944-201ENST00000581277 108 ntBASIC3.82□□□□□ -1.8
LIG1P18858 AL162713.1-201ENST00000604480 262 ntBASIC3.82□□□□□ -1.8
LIG1P18858 RNU2-4P-201ENST00000606190 192 ntBASIC3.82□□□□□ -1.8
LIG1P18858 U2.15-201ENST00000611544 191 ntBASIC3.82□□□□□ -1.8
LIG1P18858 U2.16-201ENST00000613119 191 ntBASIC3.82□□□□□ -1.8
LIG1P18858 U2.12-201ENST00000613778 191 ntBASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms