Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 MIR6755-201ENST00000619993 66 ntBASIC-0.59□□□□□ -2.5
APOBP04114 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC-0.59□□□□□ -2.5
APOBP04114 SNORA13-201ENST00000458790 133 ntBASIC-0.59□□□□□ -2.5
APOBP04114 AL391840.1-201ENST00000571144 367 ntBASIC-0.59□□□□□ -2.5
APOBP04114 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC-0.59□□□□□ -2.5
APOBP04114 RNU6-655P-201ENST00000362858 107 ntBASIC-0.59□□□□□ -2.5
APOBP04114 RNU6-811P-201ENST00000384069 107 ntBASIC-0.59□□□□□ -2.5
APOBP04114 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC-0.59□□□□□ -2.5
APOBP04114 Y_RNA.648-201ENST00000459455 110 ntBASIC-0.59□□□□□ -2.5
APOBP04114 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC-0.59□□□□□ -2.5
APOBP04114 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC-0.59□□□□□ -2.5
APOBP04114 RNU6-965P-201ENST00000516721 96 ntBASIC-0.59□□□□□ -2.5
APOBP04114 SNRPGP1-201ENST00000553864 222 ntBASIC-0.59□□□□□ -2.5
APOBP04114 MTND4P33-201ENST00000556706 766 ntBASIC-0.59□□□□□ -2.5
APOBP04114 Y_RNA.78-201ENST00000362970 110 ntBASIC-0.59□□□□□ -2.5
APOBP04114 RNU6-778P-201ENST00000363269 103 ntBASIC-0.59□□□□□ -2.5
APOBP04114 RNU6-444P-201ENST00000383988 108 ntBASIC-0.59□□□□□ -2.5
APOBP04114 RNU6-98P-201ENST00000384173 107 ntBASIC-0.59□□□□□ -2.5
APOBP04114 MTND1P30-201ENST00000441241 901 ntBASIC-0.59□□□□□ -2.5
APOBP04114 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC-0.59□□□□□ -2.5
APOBP04114 AC063943.3-201ENST00000615562 356 ntBASIC-0.59□□□□□ -2.5
APOBP04114 Y_RNA.121-201ENST00000363309 113 ntBASIC-0.6□□□□□ -2.5
APOBP04114 HLA-S-202ENST00000425174 53 ntBASIC-0.6□□□□□ -2.5
APOBP04114 AL662814.1-201ENST00000617364 121 ntBASIC-0.6□□□□□ -2.5
APOBP04114 RNU4-46P-201ENST00000410818 138 ntBASIC-0.6□□□□□ -2.51
APOBP04114 AC008267.5-201ENST00000424928 265 ntBASIC-0.6□□□□□ -2.51
APOBP04114 DEFB130D-201ENST00000426866 237 ntBASIC-0.6□□□□□ -2.51
APOBP04114 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC-0.6□□□□□ -2.51
APOBP04114 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC-0.6□□□□□ -2.51
APOBP04114 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC-0.6□□□□□ -2.51
APOBP04114 UBE2Q2P8-201ENST00000560644 102 ntBASIC-0.6□□□□□ -2.51
APOBP04114 AC023824.3-201ENST00000569003 562 ntBASIC-0.6□□□□□ -2.51
APOBP04114 HMGB1P51-201ENST00000605166 638 ntBASIC-0.6□□□□□ -2.51
APOBP04114 MTATP6P27-201ENST00000416987 621 ntBASIC-0.6□□□□□ -2.51
APOBP04114 AL365184.2-201ENST00000431139 435 ntBASIC-0.6□□□□□ -2.51
APOBP04114 AC013828.1-201ENST00000481845 158 ntBASIC-0.6□□□□□ -2.51
APOBP04114 RNU6-1210P-201ENST00000363775 107 ntBASIC-0.6□□□□□ -2.51
APOBP04114 Y_RNA.480-201ENST00000384364 102 ntBASIC-0.6□□□□□ -2.51
APOBP04114 MIR496-201ENST00000385226 102 ntBASIC-0.6□□□□□ -2.51
APOBP04114 MIR1185-1-201ENST00000408598 86 ntBASIC-0.6□□□□□ -2.51
APOBP04114 BTF3P15-201ENST00000455606 336 ntBASIC-0.6□□□□□ -2.51
APOBP04114 AC008628.1-201ENST00000508663 265 ntBASIC-0.6□□□□□ -2.51
APOBP04114 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC-0.6□□□□□ -2.51
APOBP04114 AC120349.3-201ENST00000624377 529 ntBASIC-0.6□□□□□ -2.51
APOBP04114 MIR1248-201ENST00000629190 106 ntBASIC-0.6□□□□□ -2.51
APOBP04114 RNU6-1216P-201ENST00000362590 107 ntBASIC-0.61□□□□□ -2.51
APOBP04114 RNU6-505P-201ENST00000384427 107 ntBASIC-0.61□□□□□ -2.51
APOBP04114 TPMTP2-201ENST00000414372 726 ntBASIC-0.61□□□□□ -2.51
APOBP04114 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC-0.61□□□□□ -2.51
APOBP04114 RNU7-94P-201ENST00000459576 63 ntBASIC-0.61□□□□□ -2.51
APOBP04114 RNU7-129P-201ENST00000516128 62 ntBASIC-0.61□□□□□ -2.51
APOBP04114 AC023158.1-201ENST00000561632 1025 ntBASIC-0.61□□□□□ -2.51
APOBP04114 AL162424.1-201ENST00000602325 221 ntBASIC-0.61□□□□□ -2.51
APOBP04114 MTND3P19-201ENST00000603825 345 ntBASIC-0.61□□□□□ -2.51
APOBP04114 AC009269.6-201ENST00000621778 588 ntBASIC-0.61□□□□□ -2.51
APOBP04114 AP003400.6-201ENST00000624698 740 ntBASIC-0.61□□□□□ -2.51
APOBP04114 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC-0.61□□□□□ -2.51
APOBP04114 AC068135.1-201ENST00000446164 246 ntBASIC-0.61□□□□□ -2.51
APOBP04114 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC-0.61□□□□□ -2.51
APOBP04114 AP002001.1-203ENST00000534002 267 ntBASIC-0.61□□□□□ -2.51
APOBP04114 AF038458.1-201ENST00000588406 262 ntBASIC-0.61□□□□□ -2.51
APOBP04114 AP000942.4-201ENST00000604811 241 ntBASIC-0.61□□□□□ -2.51
APOBP04114 AL158211.4-201ENST00000606988 584 ntBASIC-0.61□□□□□ -2.51
APOBP04114 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC-0.61□□□□□ -2.51
APOBP04114 MIR6828-201ENST00000636181 60 ntBASIC-0.61□□□□□ -2.51
APOBP04114 Y_RNA.562-201ENST00000384695 113 ntBASIC-0.61□□□□□ -2.51
APOBP04114 MIR563-201ENST00000385080 79 ntBASIC-0.61□□□□□ -2.51
APOBP04114 RPS20P2-201ENST00000402520 389 ntBASIC-0.61□□□□□ -2.51
APOBP04114 RNU2-23P-201ENST00000410545 195 ntBASIC-0.61□□□□□ -2.51
APOBP04114 SKA2P1-201ENST00000425592 390 ntBASIC-0.61□□□□□ -2.51
APOBP04114 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC-0.61□□□□□ -2.51
APOBP04114 RNU6-897P-201ENST00000517135 105 ntBASIC-0.61□□□□□ -2.51
APOBP04114 HIGD1AP6-201ENST00000521833 279 ntBASIC-0.61□□□□□ -2.51
APOBP04114 NEAT1_2.1-201ENST00000620525 105 ntBASIC-0.61□□□□□ -2.51
APOBP04114 U8.5-201ENST00000364528 136 ntBASIC-0.62□□□□□ -2.51
APOBP04114 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC-0.62□□□□□ -2.51
APOBP04114 SNRPEP8-201ENST00000442866 260 ntBASIC-0.62□□□□□ -2.51
APOBP04114 RPL17P19-201ENST00000489069 552 ntBASIC-0.62□□□□□ -2.51
APOBP04114 AC112204.3-201ENST00000623822 332 ntBASIC-0.62□□□□□ -2.51
APOBP04114 MTND1P37-201ENST00000636562 264 ntBASIC-0.62□□□□□ -2.51
APOBP04114 RNU6-161P-201ENST00000363051 106 ntBASIC-0.62□□□□□ -2.51
APOBP04114 SNORD114-25-201ENST00000363742 72 ntBASIC-0.62□□□□□ -2.51
APOBP04114 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.62□□□□□ -2.51
APOBP04114 CECR9-201ENST00000453421 199 ntBASIC-0.62□□□□□ -2.51
APOBP04114 AC021146.6-201ENST00000514659 117 ntBASIC-0.62□□□□□ -2.51
APOBP04114 RN7SKP164-201ENST00000516138 266 ntBASIC-0.62□□□□□ -2.51
APOBP04114 AC093012.1-202ENST00000549403 582 ntBASIC-0.62□□□□□ -2.51
APOBP04114 RNU6-534P-201ENST00000364877 106 ntBASIC-0.62□□□□□ -2.51
APOBP04114 MRPS10P2-201ENST00000431226 381 ntBASIC-0.62□□□□□ -2.51
APOBP04114 RNU7-34P-201ENST00000459394 64 ntBASIC-0.62□□□□□ -2.51
APOBP04114 RNU6-581P-201ENST00000516214 105 ntBASIC-0.62□□□□□ -2.51
APOBP04114 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC-0.62□□□□□ -2.51
APOBP04114 AC022022.2-201ENST00000602989 360 ntBASIC-0.62□□□□□ -2.51
APOBP04114 RNU6-212P-201ENST00000362642 104 ntBASIC-0.62□□□□□ -2.51
APOBP04114 RNU6-1082P-201ENST00000364574 107 ntBASIC-0.62□□□□□ -2.51
APOBP04114 RNU6-921P-201ENST00000384361 107 ntBASIC-0.62□□□□□ -2.51
APOBP04114 SNORA75.1-201ENST00000391130 148 ntBASIC-0.62□□□□□ -2.51
APOBP04114 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC-0.62□□□□□ -2.51
APOBP04114 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC-0.62□□□□□ -2.51
APOBP04114 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC-0.62□□□□□ -2.51
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms