Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC0.86□□□□□ -2.27
SHOX2O60902 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC0.86□□□□□ -2.27
SHOX2O60902 PRPS1P1-201ENST00000445305 876 ntBASIC0.86□□□□□ -2.27
SHOX2O60902 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC0.86□□□□□ -2.27
SHOX2O60902 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC0.86□□□□□ -2.27
SHOX2O60902 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC0.86□□□□□ -2.27
SHOX2O60902 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.86□□□□□ -2.27
SHOX2O60902 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC0.86□□□□□ -2.27
SHOX2O60902 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC0.86□□□□□ -2.27
SHOX2O60902 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC0.86□□□□□ -2.27
SHOX2O60902 RNU2-46P-201ENST00000517038 113 ntBASIC0.86□□□□□ -2.27
SHOX2O60902 AC136932.1-201ENST00000574771 208 ntBASIC0.86□□□□□ -2.27
SHOX2O60902 MIR3664-201ENST00000579074 99 ntBASIC0.86□□□□□ -2.27
SHOX2O60902 AC013244.2-201ENST00000603396 103 ntBASIC0.86□□□□□ -2.27
SHOX2O60902 BX284668.6-201ENST00000606899 438 ntBASIC0.86□□□□□ -2.27
SHOX2O60902 SEPT14P19-203ENST00000633205 211 ntBASIC0.86□□□□□ -2.27
SHOX2O60902 AL450472.1-202ENST00000637286 180 ntBASIC0.86□□□□□ -2.27
SHOX2O60902 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.85□□□□□ -2.27
SHOX2O60902 MIR373-201ENST00000362273 69 ntBASIC0.85□□□□□ -2.27
SHOX2O60902 RNU6-562P-201ENST00000362731 107 ntBASIC0.85□□□□□ -2.27
SHOX2O60902 Y_RNA.142-201ENST00000363491 102 ntBASIC0.85□□□□□ -2.27
SHOX2O60902 RNU6-393P-201ENST00000384475 107 ntBASIC0.85□□□□□ -2.27
SHOX2O60902 RNU6-925P-201ENST00000384629 104 ntBASIC0.85□□□□□ -2.27
SHOX2O60902 AC060773.1-201ENST00000421698 310 ntBASIC0.85□□□□□ -2.27
SHOX2O60902 AC012306.1-201ENST00000423267 114 ntBASIC0.85□□□□□ -2.27
SHOX2O60902 UBE2D3P4-201ENST00000441973 436 ntBASIC0.85□□□□□ -2.27
SHOX2O60902 AL031274.1-201ENST00000450334 232 ntBASIC0.85□□□□□ -2.27
SHOX2O60902 MTCO2P6-201ENST00000463134 685 ntBASIC0.85□□□□□ -2.27
SHOX2O60902 ARL2BPP4-201ENST00000506854 471 ntBASIC0.85□□□□□ -2.27
SHOX2O60902 RNA5SP384-201ENST00000516615 116 ntBASIC0.85□□□□□ -2.27
SHOX2O60902 MIR4775-201ENST00000581168 75 ntBASIC0.85□□□□□ -2.27
SHOX2O60902 FAM71BP1-201ENST00000604431 523 ntBASIC0.85□□□□□ -2.27
SHOX2O60902 AP001836.1-201ENST00000604675 523 ntBASIC0.85□□□□□ -2.27
SHOX2O60902 AC064872.1-201ENST00000604823 1072 ntBASIC0.85□□□□□ -2.27
SHOX2O60902 AL022345.2-201ENST00000606307 135 ntBASIC0.85□□□□□ -2.27
SHOX2O60902 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC0.85□□□□□ -2.27
SHOX2O60902 AC022306.3-201ENST00000619930 550 ntBASIC0.85□□□□□ -2.27
SHOX2O60902 BX322639.1-202ENST00000423987 2213 ntBASIC0.85□□□□□ -2.27
SHOX2O60902 RNU6-1097P-201ENST00000363586 107 ntBASIC0.84□□□□□ -2.27
SHOX2O60902 RNA5SP259-201ENST00000365541 109 ntBASIC0.84□□□□□ -2.27
SHOX2O60902 RNU6-108P-201ENST00000365558 107 ntBASIC0.84□□□□□ -2.27
SHOX2O60902 Y_RNA.412-201ENST00000384001 104 ntBASIC0.84□□□□□ -2.27
SHOX2O60902 RNU6-950P-201ENST00000384651 107 ntBASIC0.84□□□□□ -2.27
SHOX2O60902 MIR1283-1-201ENST00000408494 87 ntBASIC0.84□□□□□ -2.27
SHOX2O60902 MIR1197-201ENST00000408818 88 ntBASIC0.84□□□□□ -2.27
SHOX2O60902 USP9YP14-201ENST00000430663 563 ntBASIC0.84□□□□□ -2.27
SHOX2O60902 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC0.84□□□□□ -2.27
SHOX2O60902 AL162395.1-201ENST00000457882 422 ntBASIC0.84□□□□□ -2.27
SHOX2O60902 RNU7-34P-201ENST00000459394 64 ntBASIC0.84□□□□□ -2.27
SHOX2O60902 RNU6-1146P-201ENST00000516282 102 ntBASIC0.84□□□□□ -2.27
SHOX2O60902 SNORD27.1-201ENST00000516319 72 ntBASIC0.84□□□□□ -2.27
SHOX2O60902 AC069113.1-201ENST00000517763 267 ntBASIC0.84□□□□□ -2.27
SHOX2O60902 CYCSP23-201ENST00000519781 313 ntBASIC0.84□□□□□ -2.27
SHOX2O60902 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.84□□□□□ -2.27
SHOX2O60902 AL442163.3-201ENST00000554110 156 ntBASIC0.84□□□□□ -2.27
SHOX2O60902 SNORA59B-202ENST00000578183 701 ntBASIC0.84□□□□□ -2.27
SHOX2O60902 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC0.84□□□□□ -2.27
SHOX2O60902 MIR4753-201ENST00000585119 83 ntBASIC0.84□□□□□ -2.27
SHOX2O60902 RSL24D1P11-201ENST00000591045 491 ntBASIC0.84□□□□□ -2.27
SHOX2O60902 MIR6857-201ENST00000613267 93 ntBASIC0.84□□□□□ -2.27
SHOX2O60902 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.83□□□□□ -2.28
SHOX2O60902 RNU6-827P-201ENST00000365553 106 ntBASIC0.83□□□□□ -2.28
SHOX2O60902 MIR936-201ENST00000401264 98 ntBASIC0.83□□□□□ -2.28
SHOX2O60902 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC0.83□□□□□ -2.28
SHOX2O60902 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC0.83□□□□□ -2.28
SHOX2O60902 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC0.83□□□□□ -2.28
SHOX2O60902 ZNF114P1-201ENST00000453500 292 ntBASIC0.83□□□□□ -2.28
SHOX2O60902 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC0.83□□□□□ -2.28
SHOX2O60902 GMFBP1-201ENST00000467831 427 ntBASIC0.83□□□□□ -2.28
SHOX2O60902 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC0.83□□□□□ -2.28
SHOX2O60902 AC016256.1-201ENST00000547971 354 ntBASIC0.83□□□□□ -2.28
SHOX2O60902 AC103996.1-201ENST00000555468 102 ntBASIC0.83□□□□□ -2.28
SHOX2O60902 MIR4698-201ENST00000577795 80 ntBASIC0.83□□□□□ -2.28
SHOX2O60902 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
SHOX2O60902 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC0.82□□□□□ -2.28
SHOX2O60902 RNU6-1235P-201ENST00000384559 107 ntBASIC0.82□□□□□ -2.28
SHOX2O60902 AC090960.1-201ENST00000421072 306 ntBASIC0.82□□□□□ -2.28
SHOX2O60902 RNU6-498P-201ENST00000459468 107 ntBASIC0.82□□□□□ -2.28
SHOX2O60902 SNORD11.1-201ENST00000459482 85 ntBASIC0.82□□□□□ -2.28
SHOX2O60902 RNU2-69P-201ENST00000516061 100 ntBASIC0.82□□□□□ -2.28
SHOX2O60902 SNORA25.17-201ENST00000517184 124 ntBASIC0.82□□□□□ -2.28
SHOX2O60902 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC0.82□□□□□ -2.28
SHOX2O60902 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC0.82□□□□□ -2.28
SHOX2O60902 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC0.82□□□□□ -2.28
SHOX2O60902 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.82□□□□□ -2.28
SHOX2O60902 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC0.82□□□□□ -2.28
SHOX2O60902 MIR4661-201ENST00000582720 75 ntBASIC0.82□□□□□ -2.28
SHOX2O60902 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC0.82□□□□□ -2.28
SHOX2O60902 RNU6-545P-201ENST00000362681 104 ntBASIC0.81□□□□□ -2.28
SHOX2O60902 snoU2-30.2-201ENST00000362805 70 ntBASIC0.81□□□□□ -2.28
SHOX2O60902 SNORA4.2-201ENST00000365313 147 ntBASIC0.81□□□□□ -2.28
SHOX2O60902 RNU6-418P-201ENST00000384035 107 ntBASIC0.81□□□□□ -2.28
SHOX2O60902 RNU6-1029P-201ENST00000384109 107 ntBASIC0.81□□□□□ -2.28
SHOX2O60902 RNU6-74P-201ENST00000384235 107 ntBASIC0.81□□□□□ -2.28
SHOX2O60902 RPS3AP3-201ENST00000411933 242 ntBASIC0.81□□□□□ -2.28
SHOX2O60902 AC013410.2-201ENST00000422627 201 ntBASIC0.81□□□□□ -2.28
SHOX2O60902 HSFY7P-201ENST00000432672 318 ntBASIC0.81□□□□□ -2.28
SHOX2O60902 HSFY8P-201ENST00000437934 318 ntBASIC0.81□□□□□ -2.28
SHOX2O60902 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC0.81□□□□□ -2.28
SHOX2O60902 RPS27P1-201ENST00000450552 247 ntBASIC0.81□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 114.2 ms