Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 HMGN2P34-201ENST00000437647 269 ntBASIC0.92□□□□□ -2.26
RHBDD3Q9Y3P4 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC0.92□□□□□ -2.26
RHBDD3Q9Y3P4 OFD1P4Y-201ENST00000455273 1179 ntBASIC0.92□□□□□ -2.26
RHBDD3Q9Y3P4 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC0.92□□□□□ -2.26
RHBDD3Q9Y3P4 RNU6-1129P-201ENST00000515964 104 ntBASIC0.92□□□□□ -2.26
RHBDD3Q9Y3P4 AL137161.1-201ENST00000532231 390 ntBASIC0.92□□□□□ -2.26
RHBDD3Q9Y3P4 AC103810.9-201ENST00000606688 112 ntBASIC0.92□□□□□ -2.26
RHBDD3Q9Y3P4 AC009509.4-201ENST00000619202 509 ntBASIC0.92□□□□□ -2.26
RHBDD3Q9Y3P4 RNU6-195P-201ENST00000411352 109 ntBASIC0.91□□□□□ -2.26
RHBDD3Q9Y3P4 AC013410.2-201ENST00000422627 201 ntBASIC0.91□□□□□ -2.26
RHBDD3Q9Y3P4 AC133104.1-201ENST00000429100 218 ntBASIC0.91□□□□□ -2.26
RHBDD3Q9Y3P4 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC0.91□□□□□ -2.26
RHBDD3Q9Y3P4 NFU1P2-201ENST00000448700 469 ntBASIC0.91□□□□□ -2.26
RHBDD3Q9Y3P4 SNRPFP3-201ENST00000457792 225 ntBASIC0.91□□□□□ -2.26
RHBDD3Q9Y3P4 DEFB131C-201ENST00000528817 165 ntBASIC0.91□□□□□ -2.26
RHBDD3Q9Y3P4 AP002963.1-201ENST00000530590 184 ntBASIC0.91□□□□□ -2.26
RHBDD3Q9Y3P4 MIR4295-201ENST00000585286 85 ntBASIC0.91□□□□□ -2.26
RHBDD3Q9Y3P4 RNU6-85P-201ENST00000605989 107 ntBASIC0.91□□□□□ -2.26
RHBDD3Q9Y3P4 SNORD114-21-201ENST00000606412 72 ntBASIC0.91□□□□□ -2.26
RHBDD3Q9Y3P4 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.91□□□□□ -2.26
RHBDD3Q9Y3P4 RNU6-227P-201ENST00000362865 103 ntBASIC0.9□□□□□ -2.27
RHBDD3Q9Y3P4 RNU6-1187P-201ENST00000364771 110 ntBASIC0.9□□□□□ -2.27
RHBDD3Q9Y3P4 RNU6-456P-201ENST00000384493 107 ntBASIC0.9□□□□□ -2.27
RHBDD3Q9Y3P4 MIR19B1-201ENST00000384829 87 ntBASIC0.9□□□□□ -2.27
RHBDD3Q9Y3P4 MIR222-201ENST00000384992 110 ntBASIC0.9□□□□□ -2.27
RHBDD3Q9Y3P4 MIR1253-201ENST00000408273 105 ntBASIC0.9□□□□□ -2.27
RHBDD3Q9Y3P4 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC0.9□□□□□ -2.27
RHBDD3Q9Y3P4 PIGFP2-201ENST00000421400 651 ntBASIC0.9□□□□□ -2.27
RHBDD3Q9Y3P4 AC011233.1-201ENST00000422812 283 ntBASIC0.9□□□□□ -2.27
RHBDD3Q9Y3P4 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC0.9□□□□□ -2.27
RHBDD3Q9Y3P4 AC009237.7-201ENST00000447357 229 ntBASIC0.9□□□□□ -2.27
RHBDD3Q9Y3P4 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.9□□□□□ -2.27
RHBDD3Q9Y3P4 RNU6-1037P-201ENST00000459571 107 ntBASIC0.9□□□□□ -2.27
RHBDD3Q9Y3P4 SNORD42A-201ENST00000459584 64 ntBASIC0.9□□□□□ -2.27
RHBDD3Q9Y3P4 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.9□□□□□ -2.27
RHBDD3Q9Y3P4 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.9□□□□□ -2.27
RHBDD3Q9Y3P4 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.9□□□□□ -2.27
RHBDD3Q9Y3P4 SNORA70.22-201ENST00000517160 124 ntBASIC0.9□□□□□ -2.27
RHBDD3Q9Y3P4 MIR4742-201ENST00000581069 85 ntBASIC0.9□□□□□ -2.27
RHBDD3Q9Y3P4 MIR5006-201ENST00000583027 110 ntBASIC0.9□□□□□ -2.27
RHBDD3Q9Y3P4 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC0.9□□□□□ -2.27
RHBDD3Q9Y3P4 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC0.9□□□□□ -2.27
RHBDD3Q9Y3P4 AL021879.1-201ENST00000611756 288 ntBASIC0.9□□□□□ -2.27
RHBDD3Q9Y3P4 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.9□□□□□ -2.27
RHBDD3Q9Y3P4 MTND4P5-201ENST00000435821 1374 ntBASIC0.89□□□□□ -2.27
RHBDD3Q9Y3P4 Y_RNA.327-201ENST00000365201 102 ntBASIC0.89□□□□□ -2.27
RHBDD3Q9Y3P4 MIR586-201ENST00000385035 97 ntBASIC0.89□□□□□ -2.27
RHBDD3Q9Y3P4 RNA5SP323-201ENST00000391094 133 ntBASIC0.89□□□□□ -2.27
RHBDD3Q9Y3P4 SNRPEP10-201ENST00000420249 274 ntBASIC0.89□□□□□ -2.27
RHBDD3Q9Y3P4 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC0.89□□□□□ -2.27
RHBDD3Q9Y3P4 Z82205.1-201ENST00000428456 297 ntBASIC0.89□□□□□ -2.27
RHBDD3Q9Y3P4 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC0.89□□□□□ -2.27
RHBDD3Q9Y3P4 AC004386.2-201ENST00000441858 148 ntBASIC0.89□□□□□ -2.27
RHBDD3Q9Y3P4 HSPE1P13-201ENST00000451143 297 ntBASIC0.89□□□□□ -2.27
RHBDD3Q9Y3P4 RNU7-138P-201ENST00000459479 64 ntBASIC0.89□□□□□ -2.27
RHBDD3Q9Y3P4 AC087343.1-201ENST00000477341 475 ntBASIC0.89□□□□□ -2.27
RHBDD3Q9Y3P4 AL163540.1-201ENST00000485382 386 ntBASIC0.89□□□□□ -2.27
RHBDD3Q9Y3P4 AC010493.1-201ENST00000513479 292 ntBASIC0.89□□□□□ -2.27
RHBDD3Q9Y3P4 SNORA31.4-201ENST00000516049 129 ntBASIC0.89□□□□□ -2.27
RHBDD3Q9Y3P4 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC0.89□□□□□ -2.27
RHBDD3Q9Y3P4 BNIP3P39-201ENST00000601077 554 ntBASIC0.89□□□□□ -2.27
RHBDD3Q9Y3P4 AC068790.2-201ENST00000602601 557 ntBASIC0.89□□□□□ -2.27
RHBDD3Q9Y3P4 snoU13.31-201ENST00000607291 104 ntBASIC0.89□□□□□ -2.27
RHBDD3Q9Y3P4 AC079248.2-201ENST00000623779 326 ntBASIC0.89□□□□□ -2.27
RHBDD3Q9Y3P4 TTK-211ENST00000627129 240 ntTSL 5 BASIC0.89□□□□□ -2.27
RHBDD3Q9Y3P4 AC068647.2-201ENST00000637380 353 ntBASIC0.89□□□□□ -2.27
RHBDD3Q9Y3P4 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC0.88□□□□□ -2.27
RHBDD3Q9Y3P4 RNU1-36P-201ENST00000365130 165 ntBASIC0.88□□□□□ -2.27
RHBDD3Q9Y3P4 RNU6-53P-201ENST00000365367 106 ntBASIC0.88□□□□□ -2.27
RHBDD3Q9Y3P4 Y_RNA.560-201ENST00000384689 102 ntBASIC0.88□□□□□ -2.27
RHBDD3Q9Y3P4 SNORD12-201ENST00000391002 90 ntBASIC0.88□□□□□ -2.27
RHBDD3Q9Y3P4 RPL21P1-201ENST00000399532 476 ntBASIC0.88□□□□□ -2.27
RHBDD3Q9Y3P4 MIR320B2-201ENST00000408479 138 ntBASIC0.88□□□□□ -2.27
RHBDD3Q9Y3P4 RN7SKP200-201ENST00000410564 320 ntBASIC0.88□□□□□ -2.27
RHBDD3Q9Y3P4 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC0.88□□□□□ -2.27
RHBDD3Q9Y3P4 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC0.88□□□□□ -2.27
RHBDD3Q9Y3P4 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC0.88□□□□□ -2.27
RHBDD3Q9Y3P4 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC0.88□□□□□ -2.27
RHBDD3Q9Y3P4 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC0.88□□□□□ -2.27
RHBDD3Q9Y3P4 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC0.88□□□□□ -2.27
RHBDD3Q9Y3P4 AL356010.1-201ENST00000456364 102 ntBASIC0.88□□□□□ -2.27
RHBDD3Q9Y3P4 SRRM1P2-201ENST00000464531 1192 ntBASIC0.88□□□□□ -2.27
RHBDD3Q9Y3P4 RPL39P28-201ENST00000465655 155 ntBASIC0.88□□□□□ -2.27
RHBDD3Q9Y3P4 RNU6-237P-201ENST00000515985 71 ntBASIC0.88□□□□□ -2.27
RHBDD3Q9Y3P4 RNU6-612P-201ENST00000516909 102 ntBASIC0.88□□□□□ -2.27
RHBDD3Q9Y3P4 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC0.88□□□□□ -2.27
RHBDD3Q9Y3P4 SNRPGP20-201ENST00000604477 205 ntBASIC0.88□□□□□ -2.27
RHBDD3Q9Y3P4 AC021506.2-201ENST00000612354 169 ntBASIC0.88□□□□□ -2.27
RHBDD3Q9Y3P4 AC091895.1-201ENST00000624494 256 ntBASIC0.88□□□□□ -2.27
RHBDD3Q9Y3P4 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
RHBDD3Q9Y3P4 ANKRD20A17P-201ENST00000511745 1330 ntBASIC0.88□□□□□ -2.27
RHBDD3Q9Y3P4 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.87□□□□□ -2.27
RHBDD3Q9Y3P4 RNU6-1031P-201ENST00000384773 107 ntBASIC0.87□□□□□ -2.27
RHBDD3Q9Y3P4 Y_RNA.595-201ENST00000410403 105 ntBASIC0.87□□□□□ -2.27
RHBDD3Q9Y3P4 AC008134.1-201ENST00000420943 193 ntBASIC0.87□□□□□ -2.27
RHBDD3Q9Y3P4 RAB28P5-201ENST00000427490 651 ntBASIC0.87□□□□□ -2.27
RHBDD3Q9Y3P4 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC0.87□□□□□ -2.27
RHBDD3Q9Y3P4 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC0.87□□□□□ -2.27
RHBDD3Q9Y3P4 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC0.87□□□□□ -2.27
RHBDD3Q9Y3P4 SNORA18.6-201ENST00000516792 115 ntBASIC0.87□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 165.8 ms