Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
LIMD1Q9UGP4 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC4.34□□□□□ -1.71
LIMD1Q9UGP4 SNORD14D-201ENST00000384390 87 ntBASIC4.34□□□□□ -1.71
LIMD1Q9UGP4 RPL23AP46-201ENST00000438548 490 ntBASIC4.34□□□□□ -1.71
LIMD1Q9UGP4 AL357134.1-201ENST00000445848 426 ntBASIC4.34□□□□□ -1.71
LIMD1Q9UGP4 AC023449.1-201ENST00000454464 154 ntBASIC4.34□□□□□ -1.71
LIMD1Q9UGP4 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.34□□□□□ -1.71
LIMD1Q9UGP4 RNU6-1299P-201ENST00000516316 100 ntBASIC4.34□□□□□ -1.71
LIMD1Q9UGP4 IGLV3-26-201ENST00000520756 302 ntBASIC4.34□□□□□ -1.71
LIMD1Q9UGP4 CYCSP26-201ENST00000534107 320 ntBASIC4.34□□□□□ -1.71
LIMD1Q9UGP4 AL031274.2-201ENST00000599419 203 ntBASIC4.34□□□□□ -1.71
LIMD1Q9UGP4 AC007179.3-201ENST00000604976 235 ntBASIC4.34□□□□□ -1.71
LIMD1Q9UGP4 AL021707.8-201ENST00000609428 183 ntBASIC4.34□□□□□ -1.71
LIMD1Q9UGP4 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
LIMD1Q9UGP4 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
LIMD1Q9UGP4 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.33□□□□□ -1.72
LIMD1Q9UGP4 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC4.33□□□□□ -1.72
LIMD1Q9UGP4 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC4.33□□□□□ -1.72
LIMD1Q9UGP4 RNU6-1082P-201ENST00000364574 107 ntBASIC4.33□□□□□ -1.72
LIMD1Q9UGP4 RNU6-1235P-201ENST00000384559 107 ntBASIC4.33□□□□□ -1.72
LIMD1Q9UGP4 MIR483-201ENST00000385070 76 ntBASIC4.33□□□□□ -1.72
LIMD1Q9UGP4 SNORA11.2-201ENST00000408318 127 ntBASIC4.33□□□□□ -1.72
LIMD1Q9UGP4 RNA5SP246-201ENST00000458909 119 ntBASIC4.33□□□□□ -1.72
LIMD1Q9UGP4 RNU6-498P-201ENST00000459468 107 ntBASIC4.33□□□□□ -1.72
LIMD1Q9UGP4 RPS29P19-201ENST00000479709 171 ntBASIC4.33□□□□□ -1.72
LIMD1Q9UGP4 RNU2-34P-201ENST00000516534 121 ntBASIC4.33□□□□□ -1.72
LIMD1Q9UGP4 Y_RNA.692-201ENST00000516627 105 ntBASIC4.33□□□□□ -1.72
LIMD1Q9UGP4 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
LIMD1Q9UGP4 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.33□□□□□ -1.72
LIMD1Q9UGP4 AC019176.2-201ENST00000611579 315 ntBASIC4.33□□□□□ -1.72
LIMD1Q9UGP4 AC012314.7-201ENST00000619693 93 ntBASIC4.33□□□□□ -1.72
LIMD1Q9UGP4 MIR7154-201ENST00000620673 73 ntBASIC4.33□□□□□ -1.72
LIMD1Q9UGP4 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
LIMD1Q9UGP4 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
LIMD1Q9UGP4 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
LIMD1Q9UGP4 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.32□□□□□ -1.72
LIMD1Q9UGP4 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
LIMD1Q9UGP4 RNA5SP151-201ENST00000365632 117 ntBASIC4.32□□□□□ -1.72
LIMD1Q9UGP4 SNORA9-201ENST00000384215 133 ntBASIC4.32□□□□□ -1.72
LIMD1Q9UGP4 RNU6-1144P-201ENST00000384247 104 ntBASIC4.32□□□□□ -1.72
LIMD1Q9UGP4 SNORA72-201ENST00000384339 132 ntBASIC4.32□□□□□ -1.72
LIMD1Q9UGP4 RN7SKP167-201ENST00000411047 285 ntBASIC4.32□□□□□ -1.72
LIMD1Q9UGP4 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC4.32□□□□□ -1.72
LIMD1Q9UGP4 TRBV25OR9-2-201ENST00000438417 374 ntBASIC4.32□□□□□ -1.72
LIMD1Q9UGP4 RNU7-107P-201ENST00000459121 61 ntBASIC4.32□□□□□ -1.72
LIMD1Q9UGP4 AC010531.2-201ENST00000465012 153 ntBASIC4.32□□□□□ -1.72
LIMD1Q9UGP4 SNRPGP3-201ENST00000469405 227 ntBASIC4.32□□□□□ -1.72
LIMD1Q9UGP4 PDCD5P2-201ENST00000507570 312 ntBASIC4.32□□□□□ -1.72
LIMD1Q9UGP4 MIR449C-201ENST00000516047 92 ntBASIC4.32□□□□□ -1.72
LIMD1Q9UGP4 AC107934.2-201ENST00000518653 310 ntBASIC4.32□□□□□ -1.72
LIMD1Q9UGP4 AC018630.3-201ENST00000542637 96 ntBASIC4.32□□□□□ -1.72
LIMD1Q9UGP4 AL138721.1-201ENST00000616756 179 ntBASIC4.32□□□□□ -1.72
LIMD1Q9UGP4 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
LIMD1Q9UGP4 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.32□□□□□ -1.72
LIMD1Q9UGP4 AL353746.1-201ENST00000566293 6881 ntBASIC4.32□□□□□ -1.72
LIMD1Q9UGP4 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.32□□□□□ -1.72
LIMD1Q9UGP4 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC4.32□□□□□ -1.72
LIMD1Q9UGP4 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.32□□□□□ -1.72
LIMD1Q9UGP4 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.31□□□□□ -1.72
LIMD1Q9UGP4 AL049781.1-201ENST00000623195 3585 ntBASIC4.31□□□□□ -1.72
LIMD1Q9UGP4 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
LIMD1Q9UGP4 RNA5SP22-201ENST00000365393 109 ntBASIC4.31□□□□□ -1.72
LIMD1Q9UGP4 RNU1-44P-201ENST00000384453 163 ntBASIC4.31□□□□□ -1.72
LIMD1Q9UGP4 MIR181A2-201ENST00000384863 110 ntBASIC4.31□□□□□ -1.72
LIMD1Q9UGP4 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC4.31□□□□□ -1.72
LIMD1Q9UGP4 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC4.31□□□□□ -1.72
LIMD1Q9UGP4 PPBPP1-201ENST00000510807 373 ntBASIC4.31□□□□□ -1.72
LIMD1Q9UGP4 RNA5SP153-201ENST00000516498 76 ntBASIC4.31□□□□□ -1.72
LIMD1Q9UGP4 RNU6-126P-201ENST00000516685 103 ntBASIC4.31□□□□□ -1.72
LIMD1Q9UGP4 AC007546.2-201ENST00000623996 360 ntBASIC4.31□□□□□ -1.72
LIMD1Q9UGP4 U6.95-201ENST00000636931 70 ntBASIC4.31□□□□□ -1.72
LIMD1Q9UGP4 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
LIMD1Q9UGP4 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.31□□□□□ -1.72
LIMD1Q9UGP4 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
LIMD1Q9UGP4 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
LIMD1Q9UGP4 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
LIMD1Q9UGP4 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
LIMD1Q9UGP4 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC4.31□□□□□ -1.72
LIMD1Q9UGP4 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.3□□□□□ -1.72
LIMD1Q9UGP4 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
LIMD1Q9UGP4 Y_RNA.120-201ENST00000363304 110 ntBASIC4.3□□□□□ -1.72
LIMD1Q9UGP4 AC016925.1-201ENST00000458303 298 ntBASIC4.3□□□□□ -1.72
LIMD1Q9UGP4 AC025647.1-201ENST00000517879 253 ntBASIC4.3□□□□□ -1.72
LIMD1Q9UGP4 AC023043.3-201ENST00000593113 385 ntBASIC4.3□□□□□ -1.72
LIMD1Q9UGP4 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
LIMD1Q9UGP4 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
LIMD1Q9UGP4 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.3□□□□□ -1.72
LIMD1Q9UGP4 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
LIMD1Q9UGP4 AC027290.2-201ENST00000623210 18662 ntBASIC4.3□□□□□ -1.72
LIMD1Q9UGP4 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.29□□□□□ -1.72
LIMD1Q9UGP4 RNU6-438P-201ENST00000365561 103 ntBASIC4.29□□□□□ -1.72
LIMD1Q9UGP4 RNU6-484P-201ENST00000384016 107 ntBASIC4.29□□□□□ -1.72
LIMD1Q9UGP4 RNU6-1274P-201ENST00000384557 107 ntBASIC4.29□□□□□ -1.72
LIMD1Q9UGP4 MIR30B-201ENST00000384850 88 ntBASIC4.29□□□□□ -1.72
LIMD1Q9UGP4 SNORA26-201ENST00000391286 122 ntBASIC4.29□□□□□ -1.72
LIMD1Q9UGP4 AC008155.2-201ENST00000464337 397 ntBASIC4.29□□□□□ -1.72
LIMD1Q9UGP4 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.29□□□□□ -1.72
LIMD1Q9UGP4 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.29□□□□□ -1.72
LIMD1Q9UGP4 RNU6-586P-201ENST00000517265 104 ntBASIC4.29□□□□□ -1.72
LIMD1Q9UGP4 AC006064.5-201ENST00000541782 248 ntBASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 118 ms