Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.82□□□□□ -1.96
VSX1Q9NZR4 BMS1P22-201ENST00000414726 313 ntBASIC2.82□□□□□ -1.96
VSX1Q9NZR4 AC009414.1-201ENST00000427200 443 ntBASIC2.82□□□□□ -1.96
VSX1Q9NZR4 AL445305.1-201ENST00000432577 575 ntBASIC2.82□□□□□ -1.96
VSX1Q9NZR4 Z98949.2-201ENST00000440996 144 ntBASIC2.82□□□□□ -1.96
VSX1Q9NZR4 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.82□□□□□ -1.96
VSX1Q9NZR4 RPS29P12-201ENST00000460178 152 ntBASIC2.82□□□□□ -1.96
VSX1Q9NZR4 RPL21P10-201ENST00000463521 490 ntBASIC2.82□□□□□ -1.96
VSX1Q9NZR4 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.82□□□□□ -1.96
VSX1Q9NZR4 RN7SL499P-201ENST00000481141 276 ntBASIC2.82□□□□□ -1.96
VSX1Q9NZR4 AC145146.1-201ENST00000496370 254 ntBASIC2.82□□□□□ -1.96
VSX1Q9NZR4 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC2.82□□□□□ -1.96
VSX1Q9NZR4 Y_RNA.700-201ENST00000516806 100 ntBASIC2.82□□□□□ -1.96
VSX1Q9NZR4 AC018448.1-201ENST00000552843 316 ntBASIC2.82□□□□□ -1.96
VSX1Q9NZR4 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2.82□□□□□ -1.96
VSX1Q9NZR4 U6.105-201ENST00000637379 88 ntBASIC2.82□□□□□ -1.96
VSX1Q9NZR4 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
VSX1Q9NZR4 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
VSX1Q9NZR4 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.82□□□□□ -1.96
VSX1Q9NZR4 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
VSX1Q9NZR4 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.81□□□□□ -1.96
VSX1Q9NZR4 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
VSX1Q9NZR4 SNORA46-201ENST00000384762 135 ntBASIC2.81□□□□□ -1.96
VSX1Q9NZR4 MIR215-201ENST00000384858 110 ntBASIC2.81□□□□□ -1.96
VSX1Q9NZR4 MIR487A-201ENST00000385009 80 ntBASIC2.81□□□□□ -1.96
VSX1Q9NZR4 Y_RNA.602-201ENST00000410535 92 ntBASIC2.81□□□□□ -1.96
VSX1Q9NZR4 ARL5AP4-201ENST00000430731 512 ntBASIC2.81□□□□□ -1.96
VSX1Q9NZR4 Z98742.2-201ENST00000431564 187 ntBASIC2.81□□□□□ -1.96
VSX1Q9NZR4 Z96811.1-201ENST00000445880 108 ntBASIC2.81□□□□□ -1.96
VSX1Q9NZR4 CYCSP35-201ENST00000451978 304 ntBASIC2.81□□□□□ -1.96
VSX1Q9NZR4 RPL31P41-201ENST00000477967 372 ntBASIC2.81□□□□□ -1.96
VSX1Q9NZR4 AC103975.1-201ENST00000482506 483 ntBASIC2.81□□□□□ -1.96
VSX1Q9NZR4 SERF1AP1-201ENST00000514575 187 ntBASIC2.81□□□□□ -1.96
VSX1Q9NZR4 RNU7-110P-201ENST00000516891 62 ntBASIC2.81□□□□□ -1.96
VSX1Q9NZR4 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.81□□□□□ -1.96
VSX1Q9NZR4 DEFB108E-201ENST00000524692 240 ntBASIC2.81□□□□□ -1.96
VSX1Q9NZR4 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.81□□□□□ -1.96
VSX1Q9NZR4 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
VSX1Q9NZR4 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
VSX1Q9NZR4 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.81□□□□□ -1.96
VSX1Q9NZR4 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC2.81□□□□□ -1.96
VSX1Q9NZR4 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
VSX1Q9NZR4 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
VSX1Q9NZR4 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.8□□□□□ -1.96
VSX1Q9NZR4 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
VSX1Q9NZR4 SNORD56.5-201ENST00000364281 72 ntBASIC2.8□□□□□ -1.96
VSX1Q9NZR4 SNORA72.2-201ENST00000365028 127 ntBASIC2.8□□□□□ -1.96
VSX1Q9NZR4 Y_RNA.541-201ENST00000384640 113 ntBASIC2.8□□□□□ -1.96
VSX1Q9NZR4 RPL21P3-201ENST00000395517 478 ntBASIC2.8□□□□□ -1.96
VSX1Q9NZR4 YME1L1P1-201ENST00000429435 297 ntBASIC2.8□□□□□ -1.96
VSX1Q9NZR4 MTCO1P5-201ENST00000433573 344 ntBASIC2.8□□□□□ -1.96
VSX1Q9NZR4 IFNA11P-201ENST00000446352 526 ntBASIC2.8□□□□□ -1.96
VSX1Q9NZR4 AC009237.7-201ENST00000447357 229 ntBASIC2.8□□□□□ -1.96
VSX1Q9NZR4 NDUFB4P10-201ENST00000452541 359 ntBASIC2.8□□□□□ -1.96
VSX1Q9NZR4 RNU6-625P-201ENST00000459412 107 ntBASIC2.8□□□□□ -1.96
VSX1Q9NZR4 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.8□□□□□ -1.96
VSX1Q9NZR4 RPL7P49-201ENST00000471402 708 ntBASIC2.8□□□□□ -1.96
VSX1Q9NZR4 RAC1P5-201ENST00000512182 576 ntBASIC2.8□□□□□ -1.96
VSX1Q9NZR4 RNU2-31P-201ENST00000516954 155 ntBASIC2.8□□□□□ -1.96
VSX1Q9NZR4 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.8□□□□□ -1.96
VSX1Q9NZR4 SNORD11B-201ENST00000607707 90 ntBASIC2.8□□□□□ -1.96
VSX1Q9NZR4 ANKRD30BP1-201ENST00000451052 2186 ntBASIC2.8□□□□□ -1.96
VSX1Q9NZR4 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.8□□□□□ -1.96
VSX1Q9NZR4 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
VSX1Q9NZR4 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
VSX1Q9NZR4 RNU1-109P-201ENST00000383960 147 ntBASIC2.79□□□□□ -1.96
VSX1Q9NZR4 Y_RNA.569-201ENST00000384749 103 ntBASIC2.79□□□□□ -1.96
VSX1Q9NZR4 MIR449B-201ENST00000384995 97 ntBASIC2.79□□□□□ -1.96
VSX1Q9NZR4 SNORA46.1-201ENST00000391069 153 ntBASIC2.79□□□□□ -1.96
VSX1Q9NZR4 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.79□□□□□ -1.96
VSX1Q9NZR4 U6atac.2-201ENST00000408644 118 ntBASIC2.79□□□□□ -1.96
VSX1Q9NZR4 RN7SKP220-201ENST00000410611 288 ntBASIC2.79□□□□□ -1.96
VSX1Q9NZR4 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.79□□□□□ -1.96
VSX1Q9NZR4 UBBP3-201ENST00000445497 241 ntBASIC2.79□□□□□ -1.96
VSX1Q9NZR4 UQCRHP3-201ENST00000451503 251 ntBASIC2.79□□□□□ -1.96
VSX1Q9NZR4 AC005042.3-201ENST00000453230 174 ntBASIC2.79□□□□□ -1.96
VSX1Q9NZR4 HSPE1P25-201ENST00000455484 251 ntBASIC2.79□□□□□ -1.96
VSX1Q9NZR4 AC091179.3-201ENST00000474761 144 ntBASIC2.79□□□□□ -1.96
VSX1Q9NZR4 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC2.79□□□□□ -1.96
VSX1Q9NZR4 RNU4-71P-201ENST00000516258 113 ntBASIC2.79□□□□□ -1.96
VSX1Q9NZR4 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC2.79□□□□□ -1.96
VSX1Q9NZR4 AC011471.1-201ENST00000585766 187 ntBASIC2.79□□□□□ -1.96
VSX1Q9NZR4 RPL30P11-203ENST00000598995 310 ntBASIC2.79□□□□□ -1.96
VSX1Q9NZR4 MZT1P2-201ENST00000604387 248 ntBASIC2.79□□□□□ -1.96
VSX1Q9NZR4 AC022441.3-201ENST00000605737 136 ntBASIC2.79□□□□□ -1.96
VSX1Q9NZR4 AL442067.1-201ENST00000613261 223 ntBASIC2.79□□□□□ -1.96
VSX1Q9NZR4 AL590240.4-201ENST00000616908 390 ntBASIC2.79□□□□□ -1.96
VSX1Q9NZR4 AC018692.3-201ENST00000623929 123 ntBASIC2.79□□□□□ -1.96
VSX1Q9NZR4 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC2.79□□□□□ -1.96
VSX1Q9NZR4 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
VSX1Q9NZR4 Y_RNA.60-201ENST00000362831 98 ntBASIC2.78□□□□□ -1.96
VSX1Q9NZR4 RNU6-961P-201ENST00000363893 105 ntBASIC2.78□□□□□ -1.96
VSX1Q9NZR4 RNY1-201ENST00000364228 113 ntBASIC2.78□□□□□ -1.96
VSX1Q9NZR4 RNU6-1175P-201ENST00000365200 107 ntBASIC2.78□□□□□ -1.96
VSX1Q9NZR4 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
VSX1Q9NZR4 RNU6-1264P-201ENST00000383891 107 ntBASIC2.78□□□□□ -1.96
VSX1Q9NZR4 AL357075.1-201ENST00000404107 726 ntBASIC2.78□□□□□ -1.96
VSX1Q9NZR4 RNU2-20P-201ENST00000410425 191 ntBASIC2.78□□□□□ -1.96
VSX1Q9NZR4 RNA5SP475-201ENST00000410568 110 ntBASIC2.78□□□□□ -1.96
VSX1Q9NZR4 AC009310.1-201ENST00000414414 451 ntBASIC2.78□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 123.7 ms